SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10133  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005642
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
Location
Bomo_Chr17(-):2921771-2976029      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.509
 

Sequence

CDS
ATGAAATATGAAATCAGGATCTACATCAAATCTAAAGCTGCAGTGAAAGAAGTGTTTTGGTCAGACTTCACATATACCATGGTATATACACTTAGCGAGAGACCTAGAAGACCACCAGACACCGCAGTTGGAGCCTTTGATCAATCTTTATATCAAACAAATAGAATGATATACATTTATTGGAAACAACTTGAAGAATATGAAGAGGCAGGTACAAATTTCACTTACAAAGTTGTAGTTCATCATAAAAGCAATTATGAAACTTTGACAGCTGACAACAACAAAAGTTTGAGTTTTGTGGTCTTGGAAAAAGCACCATTTGATGCAATGGATGTCTACATTTGGTCTAGAAATGATAATGGATCTTCCATTAACAGCAGCCATCTGTACATTCCACCCAAAGAAGATACTGAAGCATTAAAAGTTTCTTCATTTACCAAACTAGCTTATGAAAATGGTGCATATAAATTGTCCTGGGTTGGTATAGAACATATTGACAATTATACACTTTTCTGGTGTCAACATAATAGTACAAAAATTTGTGCAGGCCGAATGAACTTCATTGTTTTAAGTGCCAATAAAACAATGCAAGTCATAGAACTACCTAGAGAAAACAGGTATCAGTTTGCCATATCGGCTAATAATGGGACGAAAACTAGTGGCATGGTATGGGCTATCTGTGATATATCTAAAGATGCAATTCCAATGTATGGTTTTCCGGTCAAAATGGACCATGGTATTCCAGGGAAAACTTTTGTAAAGATTAAATGGGCAATGACTTGTACACTTCAAGAAGGAATCATTACAGGATATTTGATCGCATATTGTCCTGCTCTAGATACCACTAATGTTTGTGCAACAAAAAATAAAACTAACTTATACATATCTAATCCTAAGCAAATGGAGATCAACATTACAAATCTTGAACCATACACTACATATATATTTACACTGGCATTGAACACCACTTATGGATTTAAAACAGTAGAAAATGCTTTCACGAGTATGACTACAACTGAAGATACTCCAACTAGTCCAGTTAATATTAATATAACCGATGTGCTTAGTGATTCATTGACGATTTCATGGGACCCACCTATTCATAAAAACGGAGTTATTGGAAAATATGTCATAAATAACTATGGTCAAGAAGTTTATGTAGAAAAAGTTTCAGATAAAGATGAAGATTCAAAAAGAAGGCATATTCGTTTGACTGGCTTACAGGGGTTTACTAATTATTCATTGAGTGTACAAGCATGTAGTACAGCTATAAGCAGTTGTTCGGTTTTGAATCCACATGATGCCCTTTTTGTCAGGACGAGAATAGGTCCTCCTAGTGGAGTTGCCGGACAAACTTACCAAGTTAGAGCTGTTAATTTTGATGAAGATCCTTACCACGGTGCTTTAACTGACAATAAGGATGTATACCTACATAATGCTAACTATAAAGGTATACTAGAATATCCTGGAGAATGGAGTGAGCCAAGTTTTGTAAATTGTACAAGCAAAGAACATGTGACACTAACTCTTATTTTAATGGGAATATTTATGATAATTGGTATTATGTATGGTTTTATTAAATGTTACAAGAAATACCGAAAAATGGAAGATATTAAACCAGTTTTACCAAGTGGACTAGGAGTCCCCGAAAAGGATATTTCGAAATATGCTATTGGTGGTTGGAATCCTACAAACAAGGATGAGAAACCATCTTCAGACGAAATGTTGCTATTACCAAATAGTAGAACCACTGTATCTTCAGAATTGAAACAGAAAGAAAACAATAACAGTGCTTCTAGTGATCACACTGATAGTACAGCTTTATCAGATACATCACATGGGCCTGTAGAAAGACAAATCTCCTCATCTGATGATGGATCTAATTCATCACTACATCTTGAAGTAGAACCTACGAGAACAGCTGACAGTAACATCGATGGCGAATCATGCAATTCCGAAACTGAAACATCACAAATACCGTCACCATTCTTTAATGATAATACTTTCAAGAAAAATCCATGTGGCTATGTGCAACAATCTGTAGTGAGTCCTAATACAGGATATGTTCAAAGTGTTCAAGCAGGCGTTACAAACCCACCACAACCCTCATCACTCAGTGCCAGCTCTAGTTATGTAATGGCAGCTCTGTCTCCACCTATATTTACGACACGTGTTGCTCAACCTTGCGTAACGAGTTCACAATCAGCAGGAGGCTATGTGCACCCTGAAGGTGCTCAAACTATATCAGCAATGAATTTCCCGAAATTGGGGCAGACAACGAACAAACTGTTTGGTCCTGAAAGCTTGCCAACAATGCAAACCTTGCCACCAGCGAAACACACTGCAGACAGCAGCTACATTCAACTGCAATCTCTAGATTCCTTGCCCAGACACAAACATCCTGCCCGAAGTACAGTGCCATTAAAGACGCCAGCGTCTACCGGCTACGTCCGCCAAGGTATTTACAAAATTAATCTTGTGCCAAGCGACTTGAGCACTGAAGAAGCCATCCTTCAGATTGCTGACACTATTGATAATCTCAATGGGATAGTGGAAGACGTGTTCTCTCGCTTAACGCGGCGAATCAAGCAGAATGTAGATAAAACCGCAAAATTGAATGAACGCATCGAAAACTCTAGGCTTAAAGTTGAAAAACTGACTGGAATGCAGAGAGCCATCAAAGTGTTCTCGAGTGCAAAGTACCCGTCGTCAATAACGCACGAGCATTATCGATCCGTCTTTGATTTGGAAGGCTATCAACATGTGCCTAAAAATGTTAAACTGAGTGCTAAAACTCGGGGGCCATCTGATGATAAAAGAATACAGGAGAAGCTACACTTCTATCATGTTAAAGTTGCGGAACCTAATTCACTCAAGCCCGATGAAGATTTTAGTTTGAACGCTGTTATTGATAACCTGGAAACCATCGGTGAACTTTTAGTATTTAACACCGATGAAAGCCCTTACTTCGGTGTTACCTCTAAAACACCAACCTACAAACCGGTCATCAAGAAATCGAATATTGAAAATAAGAGTCTAATAGAAGCGGCACCTTCGTCTATAATGAAGAAAGACGTCTTGAAGCGCGAAGTAGACGAATACATGTACGCACCTGGGATGGGAATGGTACCCGAAATGGAGATGCCGTTGGATTTACCGCATCTTCCAGGAATCGCTGAGGACATACAATATACTATCGCGACTGAAGGGTCTATAGCCCCGTCTGTCGTGACGTCACCGGTCACGCCGATCATCGCCATTCCTGAGGTGGAATTACCAGAGTTGCCCGATCTAAAGGAACTACCTGACGTGAAACCAGAGCCCGTGGCTATACCAGATATACCGGACGCTCCTCCGTCACCGGTTCCTGTTAGTGTGCAAGCGTTGCCACCACCGCCGCCCCCGCCACCGCCTCCGCCCCCGCCGCCGCCTATGAAGGAAGTAGAGCTCACACCATCAAAACGTGAAGAGAAAGTTTCGCCGCTATCTCCTCCCGGCACTGGTGATGCTCACGCGGACCTCATGGCTGCGATCAGGAGCGCGGGCGGTGCTGGGAGAGCGAAGTTACGGCACGCGGTCGATTCTGAAGCACCCGAGTCCACCAAACCCGCGTCCACCGGTGACCTGATGGCTGACCTCCACGCGAAACTGTCGATGCGTCGTCGCGGCATCTCTGGCGCTGAACGCGCAGGCGGCTCCGTACTCCACACCCTCGCCAGTATAATACCGGAGCCCGGAGACCAGTCGTCACCGCAACATTCCTCCGGCGACGAAGACTGGGATTAA
Protein
MKYEIRIYIKSKAAVKEVFWSDFTYTMVYTLSERPRRPPDTAVGAFDQSLYQTNRMIYIYWKQLEEYEEAGTNFTYKVVVHHKSNYETLTADNNKSLSFVVLEKAPFDAMDVYIWSRNDNGSSINSSHLYIPPKEDTEALKVSSFTKLAYENGAYKLSWVGIEHIDNYTLFWCQHNSTKICAGRMNFIVLSANKTMQVIELPRENRYQFAISANNGTKTSGMVWAICDISKDAIPMYGFPVKMDHGIPGKTFVKIKWAMTCTLQEGIITGYLIAYCPALDTTNVCATKNKTNLYISNPKQMEINITNLEPYTTYIFTLALNTTYGFKTVENAFTSMTTTEDTPTSPVNINITDVLSDSLTISWDPPIHKNGVIGKYVINNYGQEVYVEKVSDKDEDSKRRHIRLTGLQGFTNYSLSVQACSTAISSCSVLNPHDALFVRTRIGPPSGVAGQTYQVRAVNFDEDPYHGALTDNKDVYLHNANYKGILEYPGEWSEPSFVNCTSKEHVTLTLILMGIFMIIGIMYGFIKCYKKYRKMEDIKPVLPSGLGVPEKDISKYAIGGWNPTNKDEKPSSDEMLLLPNSRTTVSSELKQKENNNSASSDHTDSTALSDTSHGPVERQISSSDDGSNSSLHLEVEPTRTADSNIDGESCNSETETSQIPSPFFNDNTFKKNPCGYVQQSVVSPNTGYVQSVQAGVTNPPQPSSLSASSSYVMAALSPPIFTTRVAQPCVTSSQSAGGYVHPEGAQTISAMNFPKLGQTTNKLFGPESLPTMQTLPPAKHTADSSYIQLQSLDSLPRHKHPARSTVPLKTPASTGYVRQGIYKINLVPSDLSTEEAILQIADTIDNLNGIVEDVFSRLTRRIKQNVDKTAKLNERIENSRLKVEKLTGMQRAIKVFSSAKYPSSITHEHYRSVFDLEGYQHVPKNVKLSAKTRGPSDDKRIQEKLHFYHVKVAEPNSLKPDEDFSLNAVIDNLETIGELLVFNTDESPYFGVTSKTPTYKPVIKKSNIENKSLIEAAPSSIMKKDVLKREVDEYMYAPGMGMVPEMEMPLDLPHLPGIAEDIQYTIATEGSIAPSVVTSPVTPIIAIPEVELPELPDLKELPDVKPEPVAIPDIPDAPPSPVPVSVQALPPPPPPPPPPPPPPPMKEVELTPSKREEKVSPLSPPGTGDAHADLMAAIRSAGGAGRAKLRHAVDSEAPESTKPASTGDLMADLHAKLSMRRRGISGAERAGGSVLHTLASIIPEPGDQSSPQHSSGDEDWD

Summary

Uniprot
A0A2A4JEY4   A0A2H1W425   A0A194QS06   D0AB85   A0A194QCC0   A0A212EP81   + More
A0A1E1WQB5  
Pubmed
26354079    22118469   
EMBL
NWSH01001832    PCG69962.1    ODYU01006205    SOQ47849.1    KQ461155    KPJ08303.1    + More
FP102340    CBH09280.1    KQ459232    KPJ02630.1    AGBW02013517    OWR43293.1    GDQN01001839    JAT89215.1   
Proteomes
UP000218220    UP000053240    UP000053268    UP000007151   
Pfam
PF00041   fn3
Interpro
IPR003961   FN3_dom        + More
IPR036116   FN3_sf       
IPR013783   Ig-like_fold       
SUPFAM
SSF49265   SSF49265       
Gene 3D
2.60.40.10    
CDD
cd00063  FN3
ProteinModelPortal
A0A2A4JEY4   A0A2H1W425   A0A194QS06   D0AB85   A0A194QCC0   A0A212EP81   + More
A0A1E1WQB5  
PDB
6IAA     E-value=0.00850508,     Score=97

Ontologies

KEGG
101742044    K19599 cytokine receptor domeless | (RefSeq) cytokine receptor
GO
GO:0016021   GO:0005515   GO:0003779   GO:0006468   GO:0004535   GO:0003723   GO:0005634   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

Topology

Length:
1261
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.7372899999999
Exp number, first 60 AAs:
0.01526
Total prob of N-in:
0.73613
inside
1  -  505
TMhelix
506  -  525
outside
526  -  1261
 
 

Population Genetic Test Statistics

Pi
196.426405
Theta
16.281278
Tajima's D
-0.896915
CLR
113.123051
CSRT
0.155392230388481
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 APAPVYTFSDDEEETKR 100.00 0.002
26280517 YVGCADGGEAIPATER 100.00 0.006
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