Gene

KWMTBOMO10132

Pre Gene Modal

BGIBMGA005645

Annotation

PREDICTED:_WD_repeat-containing_protein_13-like_[Papilio_machaon]

Location

Bomo_Chr17(-):2899720-2909309      View in EpiBrowser

Full name

WD repeat-containing protein 13      

Location in the cell

PlasmaMembrane   Reliability : 1.27

CDS

ATGGCGGCTGCATTTCAGCAGCAGATCTTCGCTTTAGATGCCCGATTTAATGCTTACAGAGCACCAAACAATCCTAACTTTAAAATCCTGTACATACGCAGACGAAGTCAACTTCTTAGAGAAAATGCCAAGTTTAAGGATATTGACACAATTAAGAAATACTTGAATGTGCGGAGTCAGTTACTGCAGCGTCGTTACGGAGTCCAAGACAACATCTCAATCAGTTCTTCATCTTCTAGACAAAGATCCAGCAGTAAAGTCAACATATCTGTTGAAGAGTCTCCTACAAAAAGGAAGAATGACATGACAATATCAGAGAACTATGCCTTTACAGGAGTACATCACATATTTGACCAGCACACAGAACAAGTGAGTGTCGTGAAGTTCGCGAACAACGACCGCTCGAAGCTGTGTTGCGCTTCAGACGATGGGACCGTGTCCATATGTGACGTCACAGCGACGCCGCCGCGCGTCAGCGTCATTCTCGATGGACACACCAAAGCCGTCACTGGGTGCGACTGGTCGGCGTCTAACGAGCTGCTGGTGACGTGCGGGCTGGACGGCGCGCTGTGTCTGTGGGACGCGGGGCGGCGCCGCAAGCTGCGCGAGGTGCTCGACCAGCTGGCCGCGCCTCTGCTCTGCTGCGTCTTCCAGCCCGCCAACAACAACATGGTCATTGCGGGCAACGCTAAGGGCATGGTCGAAGTATTGAACATTTCTACTGGAATATATCCGAGGGGTGGAAGTAGTATCGTAGGGGGTAGAGTGACCGCCATAGCTTGTGAATCCAGTGGCAGGATGTTCTGGGCGGCGAATGATAAGGGCGTGATCGTGAGCTACCGGCTGGAGGGCGCGGGCGGGTCCGTGAGCAAGTTGCGTCGCTGCAGCGTGGGGGCCGCCGTGTCGTGTCTCAGCTGGAGCCCCTGGCTCGCGCGCCACCCCGCGCTGCTCGTCAGTGCGGCCGACGACTCTCTCTGCTTGTTCAGAATCGCGGACCGCGAGGGCGCGCTGGTGCTGAAGAAACGCTTCGAGGTGCCTCACCGCGGGCGCGGCGTGCGCTCCACGTTCTGCCCCATCATGTCGTTCCGGCGCGGCGTGTGCGTGGTCTCCGGCAGCGAGGACTGCTGCGTCTACTTCCTCGACATCGAGGGACGCTCCGAGCAGCCGGTCGTCAATAAGCTCCAAGGACACGCGGCCCCCGTGCTCGGGGTCAGCTTCAGCTACGACGAAAGCCTCCTGGCGACCAGTGACGTCACAGGCCTCGTCATTATCTGGCGACGGGGCACCGTGTGA

Protein

MAAAFQQQIFALDARFNAYRAPNNPNFKILYIRRRSQLLRENAKFKDIDTIKKYLNVRSQLLQRRYGVQDNISISSSSSRQRSSSKVNISVEESPTKRKNDMTISENYAFTGVHHIFDQHTEQVSVVKFANNDRSKLCCASDDGTVSICDVTATPPRVSVILDGHTKAVTGCDWSASNELLVTCGLDGALCLWDAGRRRKLREVLDQLAAPLLCCVFQPANNNMVIAGNAKGMVEVLNISTGIYPRGGSSIVGGRVTAIACESSGRMFWAANDKGVIVSYRLEGAGGSVSKLRRCSVGAAVSCLSWSPWLARHPALLVSAADDSLCLFRIADREGALVLKKRFEVPHRGRGVRSTFCPIMSFRRGVCVVSGSEDCCVYFLDIEGRSEQPVVNKLQGHAAPVLGVSFSYDESLLATSDVTGLVIIWRRGTV

Keywords

Complete proteome   Direct protein sequencing   Methylation   Nucleus   Phosphoprotein   Reference proteome   Repeat   WD repeat  

Feature

chain  WD repeat-containing protein 13

Uniprot

A0A2H1W735   A0A194QS42   A0A212EP95   A0A194QGQ3   A0A1B6KAF4   A0A067RJ69   + More
A0A1B6CKI7   A0A2J7PK27   E0VC89   A0A2J7PK31   A0A2J7PK25   A0A1B6IR49   A0A0A9ZH87   A0A1Y1LYP2   X1WRP6   A0A2H8TR67   A0A2S2R1K1   D0AB80   A0A139WKH0   A0A0T6B6Z1   A0A1W4WPA3   W4YK53   U4UB83   N6U0L1   A0A026WWY1   A0A3L8DA12   A0A0C9R409   A0A131XSU7   A0A195CD76   A0A232F015   E2APD4   C3Y8Z9   A0A0B7A8T4   A0A195EHI8   K7IMZ2   V5I0Q5   F4WYC3   A0A158NSY8   A0A1A6HTU5   A0A195FFV1   A0A151I4D3   A0A151X6S5   E2BKB4   A0A0L7QNS8   A0A210QGD9   W5PRL7   A0A3L7H1Z9   A0A154PJY7   A0A0M9A781   A0A087ZZJ5   Q6GNN2   A0A3B3SG86   A0A2A3EIJ5   X1WUQ8   S4RE16   Q32P16   Q91V09   A0A091CXS1   A0A1L8F5I5   L8YB58   A0A340WTN0   A0A2K5DP62   Q8K412   G3HND8   G1KFB4   C0SKH8   A0A2D4G7B2   A0A2D0QXM0   A0A250YJ26   A0A2U3Y490   F6Y611   G3QSU9   A0A2R9AGJ9   K7DQ47   Q6DKP5   H0XEV3   A0A2K6C7S6   G1R8M8   L8J0A7   A0A2K5ZH71   A0A096MSK4   A0A2Y9JSA5   A0A2U3VP00   A0A2K5K2S7   A0A2K6EP25   A0A2J8R8N5   G7Q2N0   A0A2K6R4W2   A0A3Q7N2X6   Q08D81   G7NR72   Q5RF24   A0A2D0QYA9   G1M1U8   A0A3Q0DMY4   A0A2Y9DMG8   A0A3Q7W7S4  

Pubmed

26354079    22118469    24845553    20566863    25401762    28004739    + More
18362917    19820115    23537049    24508170    30249741    28648823    20798317    18563158    20075255    25765539    21719571    21347285    28812685    20809919    29704459    29240929    12040188    15489334    21183079    24129315    27762356    23385571    10349636    11042159    11076861    11217851    12466851    16141073    21804562    23929341    28087693    25243066    22398555    22722832    22751099    22002653    25362486    19393038    25319552    20010809   

EMBL

ODYU01006631    SOQ48642.1    KQ461155    KPJ08307.1    AGBW02013517    OWR43296.1    + More
KQ459232    KPJ02626.1    GEBQ01031549    JAT08428.1    KK852652    KDR19392.1    GEDC01023352    JAS13946.1    NEVH01024942    PNF16687.1    DS235051    EEB11011.1    PNF16688.1    PNF16686.1    GECU01018339    GECU01006365    JAS89367.1    JAT01342.1    GBHO01000526    GBHO01000525    JAG43078.1    JAG43079.1    GEZM01046121    JAV77500.1    ABLF02029849    GFXV01004882    MBW16687.1    GGMS01014704    MBY83907.1    FP102339    FP102340    CBH09275.1    KQ971327    KYB28404.1    LJIG01009455    KRT83045.1    AAGJ04052410    AAGJ04052411    AAGJ04052412    AAGJ04052413    AAGJ04052414    KB632003    ERL87836.1    APGK01044211    KB741021    ENN75060.1    KK107078    EZA60231.1    QOIP01000011    RLU17151.1    GBYB01007540    GBYB01007542    GBYB01007543    GBYB01007544    JAG77307.1    JAG77309.1    JAG77310.1    JAG77311.1    GEFM01006511    JAP69285.1    KQ978023    KYM98033.1    NNAY01001454    OXU23919.1    GL441512    EFN64708.1    GG666492    EEN63055.1    HACG01029525    CEK76390.1    KQ978957    KYN27337.1    GANP01001801    JAB82667.1    GL888439    EGI60807.1    ADTU01025455    LZPO01017290    OBS81152.1    KQ981636    KYN38899.1    KQ976472    KYM84002.1    KQ982476    KYQ56034.1    GL448773    EFN83867.1    KQ414855    KOC60141.1    NEDP02003771    OWF47816.1    AMGL01115537    RAZU01000328    RLQ59948.1    KQ434924    KZC11608.1    KQ435732    KOX77353.1    BC073472    AAH73472.1    KZ288230    PBC31605.1    ABLF02018091    BC108332    BC120553    BC125287    CH466638    AAI08333.1    AAI20554.1    EDL33949.1    AF353243    AF353244    KN123977    KFO22670.1    CM004480    OCT66834.1    KB364590    ELV12324.1    AF513713    AK017549    AAM90957.1    BAB30800.2    JH000543    KE685981    EGW06110.1    ERE63736.1    EF447031    ABR24503.1    IACJ01101539    LAA55256.1    GFFW01001244    JAV43544.1    GAMT01006057    GAMS01010687    GAMR01008696    GAMQ01005427    GAMP01007885    JAB05804.1    JAB12449.1    JAB25236.1    JAB36424.1    JAB44870.1    CABD030124401    AJFE02020881    GABC01004254    GABD01004156    GABE01006223    GABE01006222    NBAG03000630    JAA07084.1    JAA28944.1    JAA38517.1    PNI12844.1    PNI12845.1    AY685217    AY685209    AY685210    AY685211    AY685212    AY685213    AY685214    AY685215    AY685216    AY888002    AAQR03154345    AAQR03154346    ADFV01097778    ADFV01097779    JH880360    ELR62305.1    AHZZ02037079    NDHI03003731    PNJ04878.1    PNJ04879.1    AQIA01084491    CM001296    EHH60859.1    BC123894    AAI23895.1    JU320608    JU471191    CM001273    AFE64364.1    AFH27995.1    EHH30699.1    CR857337    ACTA01018159   

Proteomes

UP000053240    UP000007151    UP000053268    UP000027135    UP000235965    UP000009046    + More
UP000007819    UP000007266    UP000192223    UP000007110    UP000030742    UP000019118    UP000053097    UP000279307    UP000078542    UP000215335    UP000000311    UP000001554    UP000078492    UP000002358    UP000007755    UP000005205    UP000092124    UP000078541    UP000078540    UP000075809    UP000008237    UP000053825    UP000242188    UP000002356    UP000273346    UP000076502    UP000053105    UP000005203    UP000261540    UP000242457    UP000245300    UP000000589    UP000028990    UP000186698    UP000011518    UP000265300    UP000233020    UP000001075    UP000030759    UP000001646    UP000221080    UP000245341    UP000008225    UP000001519    UP000240080    UP000002277    UP000005225    UP000233120    UP000001073    UP000233140    UP000028761    UP000248482    UP000245340    UP000233080    UP000233160    UP000009130    UP000233100    UP000233200    UP000286641    UP000009136    UP000001595    UP000008912    UP000189704    UP000248480    UP000286642   

PRIDE

Q91V09    Q8K412    G3HND8    Q5RF24   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2H1W735   A0A194QS42   A0A212EP95   A0A194QGQ3   A0A1B6KAF4   A0A067RJ69   + More
A0A1B6CKI7   A0A2J7PK27   E0VC89   A0A2J7PK31   A0A2J7PK25   A0A1B6IR49   A0A0A9ZH87   A0A1Y1LYP2   X1WRP6   A0A2H8TR67   A0A2S2R1K1   D0AB80   A0A139WKH0   A0A0T6B6Z1   A0A1W4WPA3   W4YK53   U4UB83   N6U0L1   A0A026WWY1   A0A3L8DA12   A0A0C9R409   A0A131XSU7   A0A195CD76   A0A232F015   E2APD4   C3Y8Z9   A0A0B7A8T4   A0A195EHI8   K7IMZ2   V5I0Q5   F4WYC3   A0A158NSY8   A0A1A6HTU5   A0A195FFV1   A0A151I4D3   A0A151X6S5   E2BKB4   A0A0L7QNS8   A0A210QGD9   W5PRL7   A0A3L7H1Z9   A0A154PJY7   A0A0M9A781   A0A087ZZJ5   Q6GNN2   A0A3B3SG86   A0A2A3EIJ5   X1WUQ8   S4RE16   Q32P16   Q91V09   A0A091CXS1   A0A1L8F5I5   L8YB58   A0A340WTN0   A0A2K5DP62   Q8K412   G3HND8   G1KFB4   C0SKH8   A0A2D4G7B2   A0A2D0QXM0   A0A250YJ26   A0A2U3Y490   F6Y611   G3QSU9   A0A2R9AGJ9   K7DQ47   Q6DKP5   H0XEV3   A0A2K6C7S6   G1R8M8   L8J0A7   A0A2K5ZH71   A0A096MSK4   A0A2Y9JSA5   A0A2U3VP00   A0A2K5K2S7   A0A2K6EP25   A0A2J8R8N5   G7Q2N0   A0A2K6R4W2   A0A3Q7N2X6   Q08D81   G7NR72   Q5RF24   A0A2D0QYA9   G1M1U8   A0A3Q0DMY4   A0A2Y9DMG8   A0A3Q7W7S4  

PDB

3EMH     E-value=4.18344e-10,     Score=155

KEGG

101744345    no KO assigned | (RefSeq) WD repeat-containing protein 13-like

GO

GO:0005886   GO:1904691   GO:0005654   GO:0005815   GO:1990841   GO:0005634   GO:0005515   GO:0004672   GO:0006468   GO:0004535   GO:0003723   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

Subcellular location

Nucleus  

Length:

430

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02289

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00508

outside

1  -  430

 

 

Pi

31.641499

Theta

191.361881

Tajima's D

-1.720629

CLR

220.118396

CSRT

0.0377981100944953

Interpretation

Possibly Positive selection