SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10129  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005560
Annotation
proteasome_26S_non-ATPase_subunit_4_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.259
 

Sequence

CDS
ATGGTCTTAGAAAGTACTATGATCTGTGTGGACAATAGTGACTACATGAGAAATGGAGATTTCTTGCCGACACGACTGCAAGCTCAGCAGGATGCTGTTAATTTGGTATGTCATTCCAAAACACGATCCAATCCTGAGAATAATGTCGGATTATTAACTCTTGCAAACGTCGAAGTATTAGCCACACTTACTAGCGACGTAGGACGTATCATGTCCAAGCTCCATCGCGTCCAGCCAAACGGTGACATCAATCTATTGACCGGAATCCGCATTGCACATTTAGCTTTAAAACACCGTCAGGGAAAGAATCACAAGATGCGCATAGTAGTTTTTGTCGGTTCCCCTGTCAACACTGACGAAAAGGAACTCGTAAAACTAGCTAAAAGGCTAAAGAAGGAGAAAGTCAACTGTGATGTTGTTTCGTTTGGAGAGGATTCAGAAAACAACCCCCTTTTGACTACCTTTGTCAACACACTAAATGGGAAAGACACATCGACTGGGGGAAGTCACCTTGTGTCTGTGCCAGCTGGAGGCTGTGTTGTGCTTTCTGAGGCTTTGATAACAAGTCCTCTGATAGGTGGTGATGGAGCAGGCCCTTCTGGCTCTGGTTTGTCTCCTTTCGAATTTGGAGTAGATCCCAATGTAGACCCAGAGCTCGCATTAGCTCTACGTGTGTCGATGGAAGAACAAAGGCAACGTCAAGAAGAAGAGTCTCGTCGTCAACAGACCACAACTGAAGGCGAAACTGGCACTGCCACTGAAGGATCAGATACAGCAGTAGAGAGAGCCATTGCTATGTCTCTCGGTCGTGATGCAATGGAACTCTCTGAAGAGGAGCAGATTGCGCTTGCAATGCAAATGAGCATGCAACAAGAAGCACCCCAGGCTGAAGAGAGCATGGATGTTTCTGAAGAATATGCAGAAGTTATGAATGATCCAGCATTTTTACAGAGTGTGCTTGAGAACCTTCCCGGAGTAGACCCACAGAGTGAAGCCATCAGAAATGCTATGTCAACAATCAAGAAGGATAAGGATGAGAAGGATGAGAAAGACAAAGACGGAAAAGGATCCACATCTAAAGAGAATTAG
Protein
MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSPLIGGDGAGPSGSGLSPFEFGVDPNVDPELALALRVSMEEQRQRQEEESRRQQTTTEGETGTATEGSDTAVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRNAMSTIKKDKDEKDEKDKDGKGSTSKEN

Summary

EMBL
BABH01020216    DQ311300    ABD36244.1    FP102339    CBH09271.1    KC469893    + More
AGC92710.1    AGBW02008005    OWR54313.1    NWSH01001365    PCG71529.1    ODYU01013053    SOQ59709.1    GAIX01005931    JAA86629.1    KQ461155    KPJ08311.1    KQ459232    KPJ02622.1    HM449899    ADO33034.1    JTDY01000993    KOB75174.1    GQ986847    GQ986849    GQ986850    GQ986851    GQ986852    GQ986853    GQ986854    GQ986855    GQ986857    GQ986859    GQ986860    GQ986861    GQ986862    GQ986863    GQ986864    GQ986865    GQ986866    ADI80996.1    GQ986867    GQ986868    GQ986869    GQ986870    GQ986871    GQ986872    GQ986873    GQ986874    GQ986875    GQ986876    GQ986877    GQ986878    GQ986879    GQ986880    GQ986881    GQ986882    GQ986883    GQ986884    GQ986885    GQ986886    ADI81016.1    GQ986827    GQ986839    GQ986840    GQ986843    GQ986845    ADI80976.1    GQ986856    GQ986858    ADI81005.1    GQ986846    ADI80995.1    GQ986828    GQ986829    GQ986830    GQ986831    GQ986832    GQ986833    GQ986834    GQ986835    GQ986836    GQ986837    GQ986838    GQ986841    GQ986842    GQ986844    ADI80977.1    GQ986848    ADI80997.1    JN898017    AET96670.1    JN897616    AET96269.1    JN898035    AET96688.1    JN898012    AET96665.1    JN898064    AET96717.1    JN898019    AET96672.1    JN898010    JN898039    JN898040    JN898041    AET96693.1    JN898002    JN898003    JN898005    AET96656.1    JN897600    AET96253.1    JN897577    AET96230.1    JN897603    AET96256.1    JN897571    AET96224.1    JN897594    JN897595    JN897596    JN897597    AET96250.1    JN897582    JN897583    JN897585    AET96238.1    JN897569    JN897573    JN897574    JN897575    AET96222.1    JN897576    JN897578    JN897579    JN897580    AET96231.1    JN897586    JN897588    AET96239.1    JN897553    JN897554    JN897567    JN897568    AET96207.1    JN897552    JN897555    JN897556    JN897557    JN897558    JN897559    JN897560    JN897562    JN897563    JN897564    JN897581    JN897611    JN897612    JN897613    JN897614    AET96212.1    JN897589    JN897590    JN897591    JN897592    JN897593    AET96245.1    JN897606    JN897607    JN897610    AET96259.1    JN897545    JN897615    JN897617    JN897618    AET96271.1    JN897542    JN897544    AET96197.1    JN897599    JN897601    JN897602    AET96254.1    JN897605    JN897608    JN897609    AET96258.1    JN897548    JN897549    JN897550    JN897551    AET96202.1    JN897604    AET96257.1    JN898022    AET96675.1    JN898015    AET96668.1    JN898038    AET96691.1    JN898020    AET96673.1    JN898009    JN898014    AET96667.1    JN898023    AET96676.1    JN898008    AET96661.1    JN898030    JN898032    JN898033    JN898034    AET96685.1    JN898016    JN898018    AET96669.1    JN898045    JN898046    JN898047    JN898048    AET96698.1    JN898043    JN898044    JN898050    JN898051    JN898052    JN898053    JN898054    AET96707.1    JN898055    JN898056    JN898057    JN898058    JN898059    AET96711.1    JN898025    JN898026    JN898027    JN898028    JN898029    AET96681.1    JN898011    JN898013    JN898060    JN898061    JN898062    JN898063    AET96716.1    JN898006    JN898007    AET96659.1    JN897541    AET96194.1    JN897547    AET96200.1    JN898037    AET96690.1    JN898021    AET96674.1    JN898049    AET96702.1    JN897598    AET96251.1    JN898024    AET96677.1    JN897546    AET96199.1    JN897565    AET96218.1    JN897584    AET96237.1    JN897561    AET96214.1    JN898031    AET96684.1    JN897587    AET96240.1    JN897570    AET96223.1    JN897566    AET96219.1    JN898042    AET96695.1    JN898036    AET96689.1    JN897572    AET96225.1    JN898004    AET96657.1    AK417638    BAN20853.1    GDKW01000104    JAI56491.1    GECL01003165    JAP02959.1    GAHY01000504    JAA77006.1    GFTR01005673    JAW10753.1    GEDC01021813    JAS15485.1    KE164279    EPQ16653.1    AAPE02030108    AKHW03006582    KYO19679.1    KB031037    ELK06049.1    GAAZ01001934    JAA96009.1   
Pfam
PF13519   VWA_2        + More
PF02809   UIM
Interpro
IPR002035   VWF_A        + More
IPR036465   vWFA_dom_sf       
IPR003903   UIM_dom       
SUPFAM
SSF53300   SSF53300       
Gene 3D
PDB
6EPF     E-value=3.41207e-97,     Score=906

Ontologies

Topology

Length:
362
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05998
Exp number, first 60 AAs:
0.0268
Total prob of N-in:
0.01166
outside
1  -  362
 
 

Population Genetic Test Statistics

Pi
234.048557
Theta
220.914202
Tajima's D
0.25992
CLR
0.410686
CSRT
0.440077996100195
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 NGDFLPTR 100.00 0.002
28556443 NGDFLPTR 100.00 0.003
28556443 IVVFVGSPVNTDEK 100.00 0.003
26280517 IVTQIGDSIAAR 100.00 0.011
25044914 IVVEEYDTGEPDEVINPK 100.00 0.011
28467696 IVTYPDVPHHVVR 100.00 0.011
28556443 LQAQQDAVNLVCHSK 100.00 0.011
28556443 ITTLWTNFAK 100.00 0.011
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