Silkworm Genome Informatics Database

Gene

KWMTBOMO10122

Pre Gene Modal

BGIBMGA005651

Annotation

poly(A)-specific_ribonuclease_[Bombyx_mori]

Location

Bomo_Chr17(-):2740589-2743939 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.165

CDS

ATGTATGTATGTGTAATTGAGAAGACACCTGTGAGGACTTCAGCTCTACAGATTAACGCGACTGCTACTACGCCGGTTAATAAAGTTATTATACCGGAGAAGGTGCCCCGGGACCTATCCAACAGCGTGTCTCCTATAACTCCGCCGAGGAAGAGAACGTTTTCGACGTCTTCCGGAGGATTCGAGGTAAATGAATTAGAATCGCCAACGAAGAAACTTAAAGACGCCAGCGAAACGAAGAAGAGAATCGATGAGAAGATTATAGACAGGTTCGATAGTGAAGCCAAGCCAGCCTGCGTGACTGTGTTCAAAGATGACGATTGCTGGGATTGA

Protein

MYVCVIEKTPVRTSALQINATATTPVNKVIIPEKVPRDLSNSVSPITPPRKRTFSTSSGGFEVNELESPTKKLKDASETKKRIDEKIIDRFDSEAKPACVTVFKDDDCWD

Uniprot

B9X256 H9J809 A0A1E1W0S1 A0A1E1WVA1 A0A173FD15 A0A194QAX4 + More
A0A142LSZ1 A0A2A4JHI6

Pubmed

19121390 27251284 26354079 23674305

EMBL

AB485782 BAH23570.1 BABH01020230 BABH01020231 GDQN01010491 JAT80563.1 + More
GDQN01000160 JAT90894.1 KT182637 ANG83463.1 KQ459232 KPJ02617.1 KC469893 AMS36865.1 NWSH01001365 PCG71535.1

Proteomes

UP000005204 UP000053268 UP000218220

PRIDE

B9X256 H9J809

Pfam

PF04857 CAF1 + More
PF08675 RNA_bind

Interpro

IPR036867   R3H_dom_sf        + More
IPR036397   RNaseH_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR014789   PolyA-riboNase_RNA_binding
IPR012337   RNaseH-like_sf
IPR035979   RBD_domain_sf
IPR006941   RNase_CAF1

SUPFAM

SSF54928   SSF54928        + More
SSF53098   SSF53098
SSF82708   SSF82708

Gene 3D

3.30.1370.50 3.30.420.10 3.30.70.330

ProteinModelPortal

B9X256 H9J809 A0A1E1W0S1 A0A1E1WVA1 A0A173FD15 A0A194QAX4 + More
A0A142LSZ1 A0A2A4JHI6

KEGG

100301509 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4] | (RefSeq) Parn; poly(A)-specific ribonuclease

GO

GO:0003723 GO:0004535 GO:0005737 GO:0006402 GO:0005634 GO:0046872

Length:

110

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00214

Exp number, first 60 AAs:

0.00214

Total prob of N-in:

0.31418

outside

1 - 110

Pi

196.040989

Theta

153.631836

Tajima's D

0.793272

CLR

0.179162

CSRT

0.597370131493425

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics