SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10119
Pre Gene Modal
BGIBMGA005652
Annotation
hypothetical_protein_KGM_00350_[Danaus_plexippus]
Full name
Protein cortex      
Location in the cell
PlasmaMembrane   Reliability : 2.466
 

Sequence

CDS
ATGCAAAACATATCTTGCTTGACTTCCTCAGTTCCAGAGCTTTTGGACTGGAGCAGTGATAACATTCTGGTGGCAGCTCTGGGCAGGAACTACCATAAATGGAGCTGGCGCACTCAAAGCCTTACCAACCAGGGTTTTACGCAATATGAAATACAATGCTGCAAGTTTGATCCTAGAGGAGAACTCTTACTGCTTGGCACTGACAACCAGATAACGGAGATTCACAACAACGCGATGAGCAAGTGGGTGGCTGAATGTTCCTGTTTGTGTAACAGATTTGTAGCCATCTGCAGCATCACTGCCGTCGATTGGAGCCCTACAGGAAACTCTTTTATAACGGGATGTTCTCGTGGAGTGCTGGTGTCATACACTCGCACTGGAGACATGCTGGGGTGGCGACGTGTGGGCGAGACGATGCTGGCGGTGCGCGTATCTCCGGACGCACGGTATGTGGCGGCCGCGGCCGTCAACGGAACCACCGTACTCGTCATGACCTGGCCGCTACTCCACTTGTACTCTAGTTTGGGCTCTAACTGGACTGTTAAGGCTTTGAGCTGGCACCCATGGCGCTCCGCCTTGCTGGGTGTGGGCGCAGTGACGTCACGGATGAACGCGCACGTCGCGGTGTGGGACGCGCCCACCTCCCGGGTCACGGACACCACAATCCGCCACAGCCGCCATAGTCTGGACGCTATGCTCTTCAGCCATAAGACCGGAGAGCTGGTCATCAGCTTGTGGAACCCGGAACGAGCCGTTTCATCGCCGAAGACTTGTTCACAATTGGTAGTGATGAGTGGACCAGATAAAGTGGTCGATCAATGGGGCGAAGAACGCTCGGGACTGGACCGGATCAGGACTATGGTTTTCAGTCCCGATGGAACTAAGCTTGCGACAGCAACAGCAGACGAAGACCTCATCATCTGGAACTTTCTCCCGGAAGACTCCAAGAGGAAGAAGTGGAAATGCGACAGATTCTGGGCGCTTCCGCTGTACCTGGACGAAACGACTTACGGCCTCTCAATGCGTTAG
Protein
MQNISCLTSSVPELLDWSSDNILVAALGRNYHKWSWRTQSLTNQGFTQYEIQCCKFDPRGELLLLGTDNQITEIHNNAMSKWVAECSCLCNRFVAICSITAVDWSPTGNSFITGCSRGVLVSYTRTGDMLGWRRVGETMLAVRVSPDARYVAAAAVNGTTVLVMTWPLLHLYSSLGSNWTVKALSWHPWRSALLGVGAVTSRMNAHVAVWDAPTSRVTDTTIRHSRHSLDAMLFSHKTGELVISLWNPERAVSSPKTCSQLVVMSGPDKVVDQWGEERSGLDRIRTMVFSPDGTKLATATADEDLIIWNFLPEDSKRKKWKCDRFWALPLYLDETTYGLSMR

Summary

Description
Controls wing pigmentation patterning by regulating scale cell development, thereby playing a key role in mimicry and crypsis (PubMed:27251285). Probably acts as an activator of the anaphase promoting complex/cyclosome (APC/C) that promotes the ubiquitin ligase activity and substrate specificity of the APC/C (By similarity).
Controls wing pigmentation patterning, possibly by regulating scale cell development (PubMed:27251284). Probably acts as an activator of the anaphase promoting complex/cyclosome (APC/C) that promotes the ubiquitin ligase activity and substrate specificity of the APC/C (By similarity).
Female meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C) (PubMed:17251266, PubMed:18020708). Required for the completion of meiosis in oocytes (PubMed:11252055, PubMed:10683177, PubMed:10924478, PubMed:17251266, PubMed:18020708). Activates the ubiquitin ligase activity and substrate specificity of APC/C and triggers the sequential degradation of mitotic cyclins in meiosis (PubMed:17251266, PubMed:18020708). Promotes the ubiquitination and degradation of CycA early in meiosis I and the degradation of CycB and CycB3 after egg activation (PubMed:18020708). Promotes degradation of mtrm at the oocyte-to-embryo transition (PubMed:24019759).
Subunit
Interacts with anaphase promoting complex/cyclosome (APC/C) subunits Cdc16 and Cdc27 (PubMed:18020708). Interacts with mtrm (PubMed:24019759).
Similarity
Belongs to the WD repeat CORT family.
Keywords
Cytoplasm   Repeat   WD repeat   Alternative splicing   Complete proteome   Developmental protein   Differentiation   Meiosis   Oogenesis   Reference proteome   Ubl conjugation  
Feature
chain  Protein cortex
splice variant  In isoform B4.
EMBL
AGBW02014684    OWR41180.1    KC469893    AGC92688.2    NWSH01002612    PCG67851.1    + More
CU463862    CBH09266.1    RSAL01000108    RVE47260.1    ODYU01002201    SOQ39387.1    FP236845    CBH09306.1    KT235895    KT235896    KT235897    KT235898    KT235899    KT235900    KT235901    KT235902    KT235903    KT235904    KT235905    KT235906    KT182637    ANG83461.1    KQ461155    KPJ08316.1    ANG83460.1    GAIX01003513    JAA89047.1    KQ459232    KPJ02616.1    KK852878    KDR14508.1    NEVH01002684    PNF41761.1    GEDC01019219    JAS18079.1    CH940649    EDW64629.2    GAMC01000040    JAC06516.1    CH933807    KRG03284.1    EDW12551.2    GEBQ01001407    JAT38570.1    GEDC01003534    JAS33764.1    GAKP01007873    JAC51079.1    GBXI01008923    JAD05369.1    CH379062    KRT04999.1    EAL32847.2    CH479184    EDW37328.1    JRES01001184    KNC24701.1    GDHF01018522    JAI33792.1    GECU01014770    JAS92936.1    GDHF01015689    JAI36625.1    GDHF01001135    JAI51179.1    CH954177    KQS70632.1    EDV59112.1    AAZX01000605    AAZX01018649    DS235169    EEB12803.1    OUUW01000006    SPP81536.1    MF432985    ATL75336.1    CH916372    EDV98901.1    GBYB01006993    JAG76760.1    GBYB01007005    JAG76772.1    CM000157    KRJ97455.1    EDW87856.2    KQ971324    EFA01168.2    GFTR01006847    JAW09579.1    CH480818    EDW51890.1    AE014134    AGB92680.1    AY033478    AY051966    CM000361    CM002910    EDX03995.1    KMY88575.1    NNAY01003513    OXU19297.1    CH963913    EDW77421.1    GBYB01002428    JAG72195.1    DS232868    EDS26217.1    CP001945    ADM11412.1    GL832956    EGD76237.1    AJWK01032468    AZIM01000193    ETE72658.1    GFDL01015809    JAV19236.1    ADMH02000329    ETN66934.1    AJVK01017759    KE162280    EPQ07678.1    DS232195    EDS37150.1    KB106370    ELK31141.1    AAMC01002118    HAEH01022295    SBS13723.1    KZ288419    PBC26009.1    ADMH02001847    ETN60906.1    HAEF01018863    SBR60022.1    BC042288    CM004473    AAH42288.1    OCT82635.1    BC061363    CR760268    AAH61363.1    CAJ83291.1    MWRG01002831    PRD32199.1    AKHW03000704    KYO44594.1    KB533688    EMP34162.1    MRZV01000808    PIK44016.1    JH431790    CP003607    AFY83701.1    JH816764    EKC38794.1   
Pfam
PF00400   WD40        + More
PF12894   ANAPC4_WD40
Interpro
IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR001680   WD40_repeat       
IPR033010   Cdc20/Fizzy       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR024977   Apc4_WD40_dom       
IPR020472   G-protein_beta_WD-40_rep       
IPR027417   P-loop_NTPase       
SUPFAM
SSF50978   SSF50978        + More
SSF52540   SSF52540       
Gene 3D
PDB
6F0X     E-value=1.22751e-10,     Score=159

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
342
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.59169
Exp number, first 60 AAs:
0.00114
Total prob of N-in:
0.14467
outside
1  -  342
 
 

Population Genetic Test Statistics

Pi
193.829021
Theta
171.845889
Tajima's D
0.254543
CLR
0.12611
CSRT
0.44212789360532
Interpretation
Uncertain
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