Silkworm Genome Informatics Database

Gene

KWMTBOMO10116

Pre Gene Modal

BGIBMGA005655

Annotation

PREDICTED:_leucine-rich_repeat_protein_soc-2_homolog_[Amyelois_transitella]

Location

Bomo_Chr17(-):2412628-2414484 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.208

CDS

ATGCTTCCGAACTGTACAAAATTGGGCAGCCTTGAATTATTAGATTTGTATGACAATGATATTTATGAGGTACCTGAAGAAATTGAGAACATAGAGAAATTGGATTTGGCACAAAATTATTTTGATGAACCAACTGATGAAATTTATCTCTCCAAAAGGAATAAGTTAAGACTAAATTTGGTGCGAGTTGACGGAAGAAAAGAAGAAATCACAATTTCTGAAAGTGAAAGTTCTTCATTAAGTGATGCAGAAGAGGACTCGTATCCAATCGATAATTTGGATGAAGATGCTGTAAAACAAAACGAACCACCGAGCTCACCAGAAGACTGGGATTCAGATGAGTACTGGATACCAAAGTTCTATAAGTTATCAACTCCCTCAACATCACAATGGCTCTGTTTCATAAAGCAAAAAATGGAAGAAGGAAACTTTTGCCCAATAGATATGCATGTTACATCAGTGATTGACAAGATTAATGAGGAACGCATGTTAAGCCCGAAAGAGGACCATGAATCGGAGGGACAGTTTGATGACTATTCTGATGACAATAGCTGA

Protein

MLPNCTKLGSLELLDLYDNDIYEVPEEIENIEKLDLAQNYFDEPTDEIYLSKRNKLRLNLVRVDGRKEEITISESESSSLSDAEEDSYPIDNLDEDAVKQNEPPSSPEDWDSDEYWIPKFYKLSTPSTSQWLCFIKQKMEEGNFCPIDMHVTSVIDKINEERMLSPKEDHESEGQFDDYSDDNS

Uniprot

H9J813 A0A2A4IT54 A0A3S2PC76 A0A194QGN9 A0A2W1BXV3 A0A173FDC5 + More
A0A2H1VHS1 C9S273 L7X1F5 E9MYJ7 E9MYJ6 A0A0L7L2P8 S4PAQ8

Pubmed

19121390 26354079 28756777 27251284 23674305 21114846 + More
26227816 23622113

EMBL

BABH01020258 NWSH01007700 PCG62849.1 RSAL01000108 RVE47255.1 KQ459232 + More
KPJ02611.1 KZ149952 PZC76593.1 KT182637 ANG83455.1 ODYU01002629 SOQ40385.1 CU367882 CU463862 CBH09261.1 CBH09265.1 KC469893 AGC92686.1 HQ328813 ADT64091.1 HQ328812 ADT64090.1 JTDY01003352 KOB69685.1 GAIX01008600 JAA83960.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000037510

PRIDE

H9J813

Pfam

PF13855   LRR_8        + More
PF00560   LRR_1
PF12799   LRR_4

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp
IPR025875   Leu-rich_rpt_4

Gene 3D

3.80.10.10

ProteinModelPortal

H9J813 A0A2A4IT54 A0A3S2PC76 A0A194QGN9 A0A2W1BXV3 A0A173FDC5 + More
A0A2H1VHS1 C9S273 L7X1F5 E9MYJ7 E9MYJ6 A0A0L7L2P8 S4PAQ8

KEGG

101745457 no KO assigned | (RefSeq) leucine-rich repeat protein soc-2 homolog

GO

Length:

184

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05537

outside

1 - 184

Pi

163.161094

Theta

179.894112

Tajima's D

-0.520822

CLR

40.462039

CSRT

0.235388230588471

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics