SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10095
Pre Gene Modal
BGIBMGA005548
Annotation
PREDICTED:_uncharacterized_protein_LOC101743204_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.747
 

Sequence

CDS
ATGGCGAATCTCCTAGCGAGAGCCCCTCAGGCGCACATGGCGTCTGATCGTGGAGTGACGTGGCACACACCGACGCCACCACCACACCTGTACCATGTGCCGGCGCCTTCGCCCCCTGATCCGCTACAGGCCATGAAGAATGCGGGCAGCAACTCTGTATTCCGACACACAGCTACCCCTCCGGAGATGTTCAGACACACACCAACCCCACCAGATAAACATCTCATTAGACATACTCCTTCTCCGGGCGACGTGAAGACGGGAGTCGCCTTACCTCCAGTAGAATTGTACTCGCACCTGGGTCCAGCTAGAGATAAGGTAGTCCGGGCAGAAGATTTACTGGCATACGCCCGTGTGGGCGTGGACCTGTCCGTGGCGGGCGCGCGGGCCAACGGCGGCGGCGCGCTGTCCGTGCGGGACGCGCCCACCATCAACAGCCTGGTGGGGCGCGGCGCCGCCCGCCCGCCGCACGCGCGCGTCGACGCGCTGCTCGAGCGCCTCGCGCCCGCCTCCCCGCACTCCGTCATCGTGCACTCCAGGGTCGCGCCCACGCCCTCGCCGCCCTCCTCCGACGAGAGCATTCCCCATGGACCATGCGGTATAAAACACAGAGAGAACCGAAGTCCCTCCGTAGACCCAGAGGTTCCAAGCGATCCGCGAGAGCAGGACTATCGACCATCCGAACAGCCCGTTTCTGTATGGAGTCAAATGGAAGTAGCTGGTATTTGGGAGCCCCGGCCCAGAGATTCGTGCGGTGCTCCACCTGGCTCCAAAAGAAAACGGAAACCGGAACGCACGATCCGCGTCCCGGTGGTTCCCCCTCCTCCTGCGCCCCCTGCGCCTGCTGAGCCCCCTCGTGCCGCGCCGCCCCTACAGAACGGCGACGTGGAGCGCGCCCACGACGTGGCGCCCGACAAACCCCCCTCCCCGCCACCCCCCGACCCACATGCGAGAAGAAAAACGCGCTCAGGATCCGCAGAGACGATCGACGACATAGCGGCAATGATCGCGAGTACGGATCGAACGGCAGAGCCAGAGCCTGAGCCGCCGGCGCCCCCCGAGCCGGAGCCAGTCGTCACTGTCGACAAACTCGAGAGCATCCTCGCGAGTCCTGAACCAGATAAGCCCTGCGAGCTGGAACCTGAACCTGAGCCGGAGCCTGCCCCCTGTGTCCCGGCCGCCCCTCGCCGCCGTAGCCTACGCACCTCTAACCCTGACGCCCCTAACGTGCCCGTTGAGTCACCCTCCGAGGCCAAGCCTGCCGAGCCCGACGCCACGGAGGCCCGCAGCGCCGAGCCCACCGCCTCCACGTACGTCGATGTAGAAAATCAACTCGAAAAAATGTTCGCCGGACTAGATGGGAACAAATCTGATCCCGACTCGACGCGACCCGCTGAGCCTAATCAAGACATCCCTGCGACGCCCGCTGTTGCCAAAAAACGACGCAAGTCTGCGCCTGCGCGGGGGGAGCGGCGGGCGGCCGCGCGGAGCGACGAGGGGTGCCGGCGGAAGGGGCCGCGGAAGAAAAGCGAATCGAGTCGTGCACGGAAAAGCAAAGACATCACCGTCAGGGACGCGTATGACTCCGGCAGCAACGCCAGCTCAAGTCGATCCAGAGGGCCCTACATTCAGGTGAGCCATGTGTACCCCGTCTATATTATATTTTTATATCAGAATAACGATAAGAAGTAA
Protein
MANLLARAPQAHMASDRGVTWHTPTPPPHLYHVPAPSPPDPLQAMKNAGSNSVFRHTATPPEMFRHTPTPPDKHLIRHTPSPGDVKTGVALPPVELYSHLGPARDKVVRAEDLLAYARVGVDLSVAGARANGGGALSVRDAPTINSLVGRGAARPPHARVDALLERLAPASPHSVIVHSRVAPTPSPPSSDESIPHGPCGIKHRENRSPSVDPEVPSDPREQDYRPSEQPVSVWSQMEVAGIWEPRPRDSCGAPPGSKRKRKPERTIRVPVVPPPPAPPAPAEPPRAAPPLQNGDVERAHDVAPDKPPSPPPPDPHARRKTRSGSAETIDDIAAMIASTDRTAEPEPEPPAPPEPEPVVTVDKLESILASPEPDKPCELEPEPEPEPAPCVPAAPRRRSLRTSNPDAPNVPVESPSEAKPAEPDATEARSAEPTASTYVDVENQLEKMFAGLDGNKSDPDSTRPAEPNQDIPATPAVAKKRRKSAPARGERRAAARSDEGCRRKGPRKKSESSRARKSKDITVRDAYDSGSNASSSRSRGPYIQVSHVYPVYIIFLYQNNDKK

Summary

Interpro
IPR034732   EPHD        + More
IPR013083   Znf_RING/FYVE/PHD       
Gene 3D

Ontologies

Topology

Length:
563
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.44185
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00107
outside
1  -  563
 
 

Population Genetic Test Statistics

Pi
152.503894
Theta
146.109979
Tajima's D
0.035494
CLR
114.190678
CSRT
0.380130993450327
Interpretation
Possibly Positive selection
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