Silkworm Genome Informatics Database

Gene

KWMTBOMO10087

Pre Gene Modal

BGIBMGA005669

Annotation

PREDICTED:_forkhead_box_protein_J1-B-like_[Amyelois_transitella]

Location

Bomo_Chr17(-):2114355-2117743 View in EpiBrowser

Transcription factor

Fork_head

Location in the cell

Nuclear Reliability : 4.703

CDS

ATGCATATTACTTCAGGGTTGTCTCCGGTATCCGGCGAAATGCTGGACACGGCTACCATACATTTTTATGGAGATTCAAGTGAACAATATGGGGAGGCTTACTTCGCCGTGGACCATACAGTGCCTGAATCATCGCACACGGTTGAAATAGAATATGTTTACGAGCAACCAGAGAGCTATACAATCAACCGAGACGACGCCAACAAACAGACGCCGACAAATAAACCGAAACATGCCCAGGAAGGTGTTCCCAAAAAAAGTCTCAAGAAAATGAAGCCCGAGAAAGTTATAGATGACGAACAGGATTTAACTAACCTGACCTGGCTCCAGAACATAACAAACATAATGGCGGTCCCGCAGTTTCCTATATCGCCGATGTCCCCGACTCCGCCACTGAAGTCGCAGAACACGAGACTGCAAAAGTTCAATCAGACTATAGCTAAATGCCAGAACGATTTTATGGAGAACAAAGAAGAATACCAAAGGAACAGCGACAAGAAACCACCATATTCCTACAGCACCCTCATCTGCATGGCGATGAGATATAACAACGACAAAATGACGTTGTCCGCGATATATTCTTGGATCAGGGAGAACTTCAAGTACTACAGGAACGCGGATCCCACATGGCAGAATTCAATAAGACACAATCTGTCCTTGAACAAAGTTTTCGTCAAAGTGGCCCGTTCGAAACACGAACCAGGGAAAGGTGGCTTCTGGAAACTCGACTTGGCTCACTTAGAGGGCAGCAAGCGCATTTCCAACCGAGCTCACAAGAAGAAAACCAAATCTAGTCCGGATACAAGAGCTGATAACACGAGTGAAGAAGGAAAGGCAGTCGAAAGAATCCTTCAGGATTCTATAACTAATGAAATGTATGAACCGATAACATTGAATTTACCGGACTACAATTTACAAAGCATCGAATCTCTTGATAACATCCAATTATCTAATAATATAGGGGCTAACGTTATTGTGGAGCCGGCTATTCCGCCGCCATTGTTACCTGAAGACGATTTAACTAATCTCTTACTTAATCCGACAGAATGGGATGATTTGCAACTTGACATGTTGGATAATTATTTGGATTTCAGTTTTAAGTAA

Protein

MHITSGLSPVSGEMLDTATIHFYGDSSEQYGEAYFAVDHTVPESSHTVEIEYVYEQPESYTINRDDANKQTPTNKPKHAQEGVPKKSLKKMKPEKVIDDEQDLTNLTWLQNITNIMAVPQFPISPMSPTPPLKSQNTRLQKFNQTIAKCQNDFMENKEEYQRNSDKKPPYSYSTLICMAMRYNNDKMTLSAIYSWIRENFKYYRNADPTWQNSIRHNLSLNKVFVKVARSKHEPGKGGFWKLDLAHLEGSKRISNRAHKKKTKSSPDTRADNTSEEGKAVERILQDSITNEMYEPITLNLPDYNLQSIESLDNIQLSNNIGANVIVEPAIPPPLLPEDDLTNLLLNPTEWDDLQLDMLDNYLDFSFK

Uniprot

H9J827 A0A2A4JMN2 A0A2H1VCM1 A0A3S2NAL6 A0A194QTL7 A0A0L7L396 + More
A0A194QAM9 L7X1L3 A0A212FIA7

Pubmed

19121390 26354079 26227816 23674305 22118469

EMBL

BABH01020294 NWSH01000985 PCG73241.1 ODYU01001641 SOQ38152.1 RSAL01000145 + More
RVE45934.1 KQ461155 KPJ08345.1 JTDY01003288 KOB69796.1 KQ459232 KPJ02588.1 KC469893 AGC92663.1 AGBW02008409 OWR53466.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053240 UP000037510 UP000053268 + More
UP000007151

PRIDE

H9J827

Pfam

PF00250 Forkhead

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf
IPR018122   TF_fork_head_CS_1
IPR001766   Fork_head_dom
IPR030456   TF_fork_head_CS_2

SUPFAM

SSF46785 SSF46785

Gene 3D

1.10.10.10

CDD

cd00059 FH

ProteinModelPortal

H9J827 A0A2A4JMN2 A0A2H1VCM1 A0A3S2NAL6 A0A194QTL7 A0A0L7L396 + More
A0A194QAM9 L7X1L3 A0A212FIA7

PDB

2C6Y E-value=8.82765e-23, Score=264

KEGG

101743617 K09402 forkhead box protein J1 | (RefSeq) forkhead box protein J1-A-like

GO

GO:0043565 GO:0005634 GO:0003700 GO:0003677 GO:0006355 GO:0046835 GO:0005737 GO:0008152 GO:0016301 GO:0016773 GO:0016155 GO:0003824

Subcellular location

Nucleus

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000970000000000001

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.00355

outside

1 - 367

Pi

181.738668

Theta

167.248277

Tajima's D

-0.536276

CLR

5.68704

CSRT

0.228838558072096

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics