SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10074  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005672
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_rho_GDP-dissociation_inhibitor_1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.706
 

Sequence

CDS
ATGTCTGGAGAACCTGAAGTAGCCCATACACCCGAAGAGGATACAGAGGAAGAAGAAATCAAATCCTCATATAAGCCACCTCCAGAGAAGACCATAGAGGAGATCCTTGCTGCTGACCAAGAGGATGAATCCCTTCGGAAGTACAAGGAAGCACTGCTTGGACAAGCCCAAGCAGGTGCTGTCATTGTTGAACCGGATGATCCTCGCAAAGTGATAGTGAAGAAGCTAGCATTGTGTGTGGTTGGGCGCGATGATGTCGAGCTGGATCTCACTGGGGACTTGACCGACCTCAAAAAGCAGGTATTCGTGATAAAGGAGGGTGTACAATACCGAATAAGGATCGATTTTATCGTTCAACGCGAGATCGTGCACGGTCTGAAGTACGTGCAGAAGACCTACAGACTGGGCGTTCCAGTTGACAAGATGACTCATATGGTCGGCTCCTATCCCCCCAAAACTGAGATTCAGTCTTACACGACGCCCCCCGAGGATGCGCCGTCCGGGATGATGGCGCGAGGGTCGTACAGCGTCAACAGCCTCTTCACCGACGACGACAAGAACGTTCACCTCCAGTGGGAGTGGAGCTTCGAAATCAAGAAGGACTGGAAAGACTAA
Protein
MSGEPEVAHTPEEDTEEEEIKSSYKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRDDVELDLTGDLTDLKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDWKD

Summary

EMBL
KQ461155    KPJ08350.1    KQ459232    KPJ02581.1    NWSH01001918    PCG69684.1    + More
GDQN01010280    JAT80774.1    AGBW02008481    OWR53254.1    GAIX01004044    JAA88516.1    HQ851394    AEV89772.1    KK107161    EZA56570.1    NNAY01000754    OXU26661.1    LBMM01001424    KMQ96348.1    KK854004    PTY09033.1    JRES01000502    KNC30588.1    AK417236    BAN20451.1    GBGD01002943    JAC85946.1    GL888120    EGI66983.1    GECL01002630    JAP03494.1    QOIP01000003    RLU24795.1    AAZX01001560    AAZX01001590    KQ435916    KOX68811.1    NEVH01003493    PNF40750.1    KQ976719    KYM76744.1    KQ981276    KYN43503.1    KQ977329    KYN03574.1    GDAI01000715    JAI16888.1    EF638998    ABR27883.1    GL451091    EFN80048.1    GBHO01041918    GBHO01041917    GBHO01041916    GBHO01041915    GBRD01007960    GDHC01010307    JAG01686.1    JAG01687.1    JAG01688.1    JAG01689.1    JAG57861.1    JAQ08322.1    KQ434869    KZC09364.1    GALX01004085    JAB64381.1    GEDC01006734    JAS30564.1    KZ288353    PBC27334.1    KQ971363    EFA09021.1    KA645054    AFP59683.1    ABLF02037163    AK340319    BAH70949.1    ADTU01024934    ADTU01024935    GFDF01006702    JAV07382.1    GFDG01000789    JAV18010.1    GFDF01006376    JAV07708.1    JXUM01121147    GAPW01004550    KQ566467    JAC09048.1    KXJ70113.1    JR045985    AEY60105.1    CH963847    EDW73333.1    CP012525    ALC44646.1    GECZ01019807    GECZ01014300    GECZ01002453    JAS49962.1    JAS55469.1    JAS67316.1    DQ440449    CH477957    ABF18482.1    EAT34801.1    CH940647    EDW70819.1    GECU01016969    JAS90737.1    CH933809    EDW19207.1    GAMC01012135    JAB94420.1    AAAB01008986    EAA00172.2    APCN01003270    GBXI01014490    JAC99801.1    GAKP01019026    GAKP01019020    JAC39932.1    GDHF01031081    GDHF01028010    GDHF01014736    GDHF01003239    JAI21233.1    JAI24304.1    JAI37578.1    JAI49075.1    GFDL01012222    JAV22823.1    DS231941    EDS28106.1    GGFK01006727    MBW40048.1    GGFM01002702    MBW23453.1    ADMH02000039    ETN68023.1    KRF97748.1    GAMD01002383    JAA99207.1    GL438128    EFN69531.1    CH916366    EDV97788.1    AXCN02001682    DS235755    EEB16415.1    KRF85134.1    KRG06548.1    ATLV01027094    KE525423    KFB53891.1    KQ980211    KYN17205.1    APGK01022086    BT127583    KB740398    KB632255    AEE62545.1    ENN80738.1    ERL90636.1    KQ414642    KOC66732.1    KQ983089    KYQ47575.1    GFDL01012167    JAV22878.1    GANO01002656    JAB57215.1    CM000159    EDW95255.1    CH379069    EAL29748.1    GEZM01054662    GEZM01054661    JAV73499.1    CM000363    CM002912    EDX11148.1    KMZ00646.1    CH902618    EDV41076.1    KPU78913.1    CH480844    EDW49850.1    AE014296    AY061221    AAF49090.1    AAL28769.1    AGB94773.1    OUUW01000002    SPP77272.1   
Pfam
PF02115   Rho_GDI
Interpro
IPR000406   Rho_GDI        + More
IPR024792   RhoGDI_dom_sf       
IPR014756   Ig_E-set       
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
SUPFAM
SSF81296   SSF81296        + More
SSF48371   SSF48371       
Gene 3D
PDB
1FST     E-value=1.01755e-46,     Score=467

Ontologies

Topology

Length:
204
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04975
outside
1  -  204
 
 

Population Genetic Test Statistics

Pi
198.882434
Theta
17.063285
Tajima's D
0.542853
CLR
0.584559
CSRT
0.545472726363682
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 IGVPVDK 100.00 6e-08
26280517 TEIINANNMSIFENFAPPQK 100.00 6e-08
25044914 TEIIFTVR 100.00 6e-08
28467696 TEIQPPKPNSQCPR 100.00 6e-08
28556443 EALLGQAQAGAVIVEPDDPRK 100.00 6e-08
28556443 LVLSDGVVYAHR 100.00 6e-08
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