Silkworm Genome Informatics Database

Gene

KWMTBOMO10053

Pre Gene Modal

BGIBMGA005682

Annotation

PREDICTED:_transmembrane_channel-like_protein_3_[Papilio_xuthus]

Location

Bomo_Chr17(-):1138124-1144970 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.161

CDS

ATGGACGATGAAATAGAAGTGGACCCGAGGCCTTTAAGCTCACGCCGAAGCTTTACGCTGAGAAACTCTGCAGCAAGACAGGTCGCCGTCAACTTTATGCCATCAAGACAAATTCCTTACAACACATTGAGACTACGTCGAAACAATACCGAAAATAATGCATTGCTGACTGATGTTGCTGAGGCAGCAGATGAAGCTGACAATGCTGATGTGCAAGCCAATATTATCGTTCGTGAGATGGAACAGCACCACCAGCTCATGGAGGACACCCCTGATGCTGAGGAGCTGAGAAGAGAGGCTCTTCGTGAGCTCCCACAAGGTTTGACCATGAAGAGGAATGTCCGAGCGAAATTATCTGCCTCAGTTAGCTTGAGGTCGAAAAGGAAACCAATTTCACTGTGGAAAAGGTTCAAATACAGAATGAGCTTTGGATGGAAACGGACAAAAGACCGCATGCGTGATCTCGTATTTTCGATTGAACTCTGGTACGAAGCCATTCGAAATATTGAGGGCCACTTCGGATCGGCTGTCGGGTCATACTTCTACCTAGTTCGCTGGCTGTTTACTATGAACTTGCTGCTATCTGGAATGGTGATACTGTTCGTGGTGGTGCCGCAGGTCCTGCATGATAAGCCCGACAAGACTGTAAACTTCGGATTCTGGGATTTCATTAGTGGGCAGGGTTGGTTAGAAGACTCGTTGTTGTTCTACGCGCACTACCACGACGGCGCGGTGGTCACGGCCGGACTCTCATACTACATGCCGTTCGCGTATTTCTTCACTATGGTCTGTCTGTATCTGACATGTTTTGCTGTTCTGTGTTACAGAACTGCATATTCCTACCGACGTAACTTCATCGAGACCGGAGGCGGAGTGACTTTGATTTTCGCCAACAAAGTTTTTTGCGGCTGGGACTTTGGTATAGTCTCCCATAAAGCCGCCGAATTTACCTCCACAAGCATCTATAACGAATTTAAGGAACTCCTCAGCGAACAGAACAGGAACAAAGTGTCGATGCCGGTCTGCGTGAGGATATGCCAGTACATGACCAACATAGTGGCCACCGGGCTGGTGCTCGCGCTAGTGGTGGCCGTGAACTGGGGGCTGTGGCACATGCTGGAGGCGGAGACGGCGTGGGCGGGGTGGGAGCTGGCGGTGTCGGCGCTGCTGACGCTCGTCGTCACCCTGTGCCCACTCGTCTTCTACGGAGTTGTCAAGTCAGTTTATCATATTGGTATTTGA

Protein

MDDEIEVDPRPLSSRRSFTLRNSAARQVAVNFMPSRQIPYNTLRLRRNNTENNALLTDVAEAADEADNADVQANIIVREMEQHHQLMEDTPDAEELRREALRELPQGLTMKRNVRAKLSASVSLRSKRKPISLWKRFKYRMSFGWKRTKDRMRDLVFSIELWYEAIRNIEGHFGSAVGSYFYLVRWLFTMNLLLSGMVILFVVVPQVLHDKPDKTVNFGFWDFISGQGWLEDSLLFYAHYHDGAVVTAGLSYYMPFAYFFTMVCLYLTCFAVLCYRTAYSYRRNFIETGGGVTLIFANKVFCGWDFGIVSHKAAEFTSTSIYNEFKELLSEQNRNKVSMPVCVRICQYMTNIVATGLVLALVVAVNWGLWHMLEAETAWAGWELAVSALLTLVVTLCPLVFYGVVKSVYHIGI

Uniprot

H9J840 A0A2A4K8Z1 A0A194QAR7 A0A3S2NV53 A0A0N1IPT7 A0A212EYF6 + More
A0A1W4WJ38 A0A1W4WJ20 A0A1B6E9M1 A0A1B6IT46 A0A1B6DMG2 A0A1B6LIN3 A0A232F3N7 K7IYE9 A0A1B0D1E3 E0VN37 W8BII4 V4A250

Pubmed

19121390 26354079 22118469 28648823 20075255 20566863 + More
24495485 23254933

EMBL

BABH01020391 NWSH01000033 PCG80466.1 KQ459232 KPJ02562.1 RSAL01000062 + More
RVE49557.1 KQ460044 KPJ18331.1 AGBW02011526 OWR46526.1 GEDC01002713 JAS34585.1 GECU01017610 JAS90096.1 GEDC01010450 JAS26848.1 GEBQ01016523 JAT23454.1 NNAY01001116 OXU25088.1 AJVK01010220 AJVK01010221 DS235332 EEB14803.1 GAMC01008018 JAB98537.1 KB202619 ESO89005.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000283053 UP000053240 UP000007151 + More
UP000192223 UP000215335 UP000002358 UP000092462 UP000009046 UP000030746

PRIDE

H9J840

Pfam

PF07810 TMC

Interpro

IPR038900 TMC + More
IPR012496 TMC_dom

ProteinModelPortal

H9J840 A0A2A4K8Z1 A0A194QAR7 A0A3S2NV53 A0A0N1IPT7 A0A212EYF6 + More
A0A1W4WJ38 A0A1W4WJ20 A0A1B6E9M1 A0A1B6IT46 A0A1B6DMG2 A0A1B6LIN3 A0A232F3N7 K7IYE9 A0A1B0D1E3 E0VN37 W8BII4 V4A250

KEGG

101744920 K21988 transmembrane channel-like protein | (RefSeq) transmembrane channel-like protein 3

GO

GO:0005887 GO:0016021

PANTHER

PTHR23302

Length:

413

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

91.22735

Exp number, first 60 AAs:

0.0024

Total prob of N-in:

0.93514

inside

1 - 181

TMhelix

182 - 204

outside

205 - 251

TMhelix

252 - 274

inside

275 - 350

TMhelix

351 - 373

outside

374 - 382

TMhelix

383 - 405

inside

406 - 413

Pi

203.043151

Theta

180.008456

Tajima's D

0.464388

CLR

0.036962

CSRT

0.507874606269687

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics