Gene

KWMTBOMO10051

Pre Gene Modal

BGIBMGA005683

Annotation

Transmembrane_channel-like_protein_5_[Papilio_machaon]

Location

Bomo_Chr17(-):1125102-1131940      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.921

CDS

ATGAAGTTGTTTCGAGGTATTGTCTGTCTACGGGCTGATGATGTTGTAATCCATAGATTGGAGTACTACACGCGTCGTACGGCGGTCTACGTGACGCTGGCCAGGACTTGGCTGTTGGACATGGGCGCGCTGATGCTTCTGCTGGTGTACTGGTCCCGGTCGAACACTGACTGCTGGGAGACGCGTTTCGGTCAGGAAGCGTACAGGCTGGTCCTGCTGGACGCCGTGGTCTCGCTGCTGGTGTTGCCAGCCATTGAGTTTATTAGAGCTTTGATATATAAGTTAAACCCGGACTCGTCGGCGCCGGAGTTCAACATAGCGTATAACTCGCTCACGTTGATTTACAACCAGGGGGTGCTCTGGTTCGGTCTGCTGTTCTCGCCCCTGCTCGTGGTGGCAGTCACCATCAAGTTCTTTATCTTGTTCTACGTGAAGAGAGAATGCGCTCTGAGGGCATGCCAGCCGGCTAGAAAGGTGTGGCGCGCGGCGCAGACGCAGACGGTGCTGTACGTGCTGGTCACGCTCTCGCTCTTCGCCACGCTGTTCGGGCTCGGCTCGCTCTTCTTCAGGAGTTCATCGAAGGTCTGCGGCCCGTTCCGTGGCTACGAGACGGTGTACAGCGTGCTCAGCGAAGGAGCCCTGAGGCTGTCGGAGCACCCCGCCGCCGCCACCATACTCGCCTTCTTCGGCAGGCCCGGACCTCTGGCCTTCATACTGCTTTTTCTCTGCGTGTCGGTGTACTACATGCGGGCGCGCGCCCTCGCGCACTCCTCCATGGTGGTCATATTGCGTCACATGCTAGTACTGCAGGCGAAGGACAAGGACTTCCTGCTCAACGCCATCGCTAAAGTCTCCAACGGGGAGTGGTCGTACAGCCCGAAGGCGGCCGAGGGTCCGGACAGCCACACGTGGAAGTACATTAGGGACGTCAGGAAGCCATCGAACTCTGGCTTCCATTTTGACGCATCGAGGCTCAGTCATTCGTTCGGGGACCGACCTCGGTCGCGCGTCAAGGAATACCGGCCTTATTCGCATTTGACCGAGAGGTCGAAATCGAATGACGGCGACACCGACAGCTCGTTTAGCTGGCAAGGCTCTAGCAGTCGTCTGGCACAAACCGAAGACGACAAGCGGTGGCCTTAG

Protein

MKLFRGIVCLRADDVVIHRLEYYTRRTAVYVTLARTWLLDMGALMLLLVYWSRSNTDCWETRFGQEAYRLVLLDAVVSLLVLPAIEFIRALIYKLNPDSSAPEFNIAYNSLTLIYNQGVLWFGLLFSPLLVVAVTIKFFILFYVKRECALRACQPARKVWRAAQTQTVLYVLVTLSLFATLFGLGSLFFRSSSKVCGPFRGYETVYSVLSEGALRLSEHPAAATILAFFGRPGPLAFILLFLCVSVYYMRARALAHSSMVVILRHMLVLQAKDKDFLLNAIAKVSNGEWSYSPKAAEGPDSHTWKYIRDVRKPSNSGFHFDASRLSHSFGDRPRSRVKEYRPYSHLTERSKSNDGDTDSSFSWQGSSSRLAQTEDDKRWP

Uniprot

A0A2A4K8Z1   A0A2H1VSY0   A0A3S2NV53   A0A0N1IPT7   A0A194QAR7   A0A2J7QE88   + More
A0A067RJ61   A0A1S4FMK8   Q16VL2   V5GL48   A0A023EUS1   A0A182H2F3   A0A1Q3FCV5   B0X6W4   A0A1B6C112   A0A1B6DMG2   A0A1Y1K0S4   A0A1W4WJ38   A0A1W4WJ20   A0A1B6GBE1   A0A1J1I8S3   A0A0K8VHL7   A0A336LSF5   A0A0C9RPE8   U4TWT5   N6TQJ7   A0A0K8VN84   A0A0A1X885   A0A034VS87   A0A0C9R2I4   A0A139WEB7   E2AP44   E2BAB1   A0A232F3N7   W8BII4   K7IYE9   A0A2M3ZLV2   A0A1L8DDF2   A0A2M3ZLS5   A0A2M4A3F4   A0A1L8DDI1   A0A1L8DEZ3   A0A1L8DF41   A0A026VT44   A0A182J950   W5JPD2   A0A195DN52   A0A1E1XQS6   A0A182SE38   A0A1E1X6D3   F4W4F6   A0A151WYX9   A0A195BHD7   A0A182K6H9   A0A131XN56   A0A182N108   A0A182RV51   A0A182W4Q7   A0A158P373   A0A210QNW6   A0A195F0E0   A0A182QU36   A0A131YW06   A0A084VAB2   A0A224Z8K8   A0A195CD28   A0A182Y7H2   A0A182MS89   A0A182XLP5   V4A250   A0A182VLE1   A0A182IA56   A0A182TSQ3   A0A2R5LEM3   Q7Z014   A0A182PQ61   F7ITZ5   A0A1S4G9C4   A0A0P4W0Z3   A0A0P4W4G5   A0A0P4VVR6   A0A2C9M3S8   A0A293M4R7   A0A293LIL5  

Pubmed

26354079    24845553    17510324    24945155    26483478    28004739    + More
23537049    25830018    25348373    18362917    19820115    20798317    28648823    24495485    20075255    24508170    30249741    20920257    23761445    29209593    28503490    21719571    28049606    21347285    28812685    26830274    24438588    28797301    25244985    23254933    12812529    12364791    15562597   

EMBL

NWSH01000033    PCG80466.1    ODYU01004264    SOQ43951.1    RSAL01000062    RVE49557.1    + More
KQ460044    KPJ18331.1    KQ459232    KPJ02562.1    NEVH01015318    PNF26902.1    KK852652    KDR19382.1    CH477589    EAT38584.1    GALX01003647    JAB64819.1    GAPW01000418    JAC13180.1    JXUM01024284    KQ560685    KXJ81282.1    GFDL01009631    JAV25414.1    DS232427    EDS41635.1    GEDC01030339    JAS06959.1    GEDC01010450    JAS26848.1    GEZM01098847    JAV53720.1    GECZ01010018    JAS59751.1    CVRI01000044    CRK96627.1    GDHF01013961    JAI38353.1    UFQT01000140    SSX20755.1    GBYB01010305    JAG80072.1    KB631579    ERL84433.1    APGK01058707    KB741291    ENN70561.1    GDHF01011973    JAI40341.1    GBXI01006995    JAD07297.1    GAKP01013633    JAC45319.1    GBYB01010304    JAG80071.1    KQ971357    KYB26181.1    GL441452    EFN64780.1    GL446696    EFN87366.1    NNAY01001116    OXU25088.1    GAMC01008018    JAB98537.1    GGFM01008734    MBW29485.1    GFDF01009585    JAV04499.1    GGFM01008735    MBW29486.1    GGFK01002023    MBW35344.1    GFDF01009586    JAV04498.1    GFDF01009129    JAV04955.1    GFDF01009130    JAV04954.1    KK108051    QOIP01000001    EZA46953.1    RLU26903.1    AXCP01007156    ADMH02000938    ETN64624.1    KQ980713    KYN14256.1    GFAA01002133    JAU01302.1    GFAC01004577    JAT94611.1    GL887532    EGI70851.1    KQ982649    KYQ53102.1    KQ976467    KYM84184.1    GEFH01001031    JAP67550.1    ADTU01007769    NEDP02002607    OWF50434.1    KQ981905    KYN33584.1    AXCN02001393    GEDV01005857    JAP82700.1    ATLV01003054    KE524109    KFB34906.1    GFPF01012775    MAA23921.1    KQ977935    KYM98707.1    AXCM01005583    KB202619    ESO89005.1    APCN01001124    GGLE01003845    MBY07971.1    AY263176    AAP78791.1    AAAB01008846    EAA06337.4    GDRN01092930    GDRN01092929    JAI60005.1    GDRN01092925    JAI60007.1    GDRN01092927    JAI60006.1    GFWV01010309    MAA35038.1    GFWV01002969    MAA27699.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000235965    UP000027135    + More
UP000008820    UP000069940    UP000249989    UP000002320    UP000192223    UP000183832    UP000030742    UP000019118    UP000007266    UP000000311    UP000008237    UP000215335    UP000002358    UP000053097    UP000279307    UP000075880    UP000000673    UP000078492    UP000075901    UP000007755    UP000075809    UP000078540    UP000075881    UP000075884    UP000075900    UP000075920    UP000005205    UP000242188    UP000078541    UP000075886    UP000030765    UP000078542    UP000076408    UP000075883    UP000076407    UP000030746    UP000075903    UP000075840    UP000075902    UP000075885    UP000007062    UP000076420   

Pfam

PF07810   TMC

Interpro

IPR012496   TMC_dom        + More
IPR038900   TMC       

ProteinModelPortal

A0A2A4K8Z1   A0A2H1VSY0   A0A3S2NV53   A0A0N1IPT7   A0A194QAR7   A0A2J7QE88   + More
A0A067RJ61   A0A1S4FMK8   Q16VL2   V5GL48   A0A023EUS1   A0A182H2F3   A0A1Q3FCV5   B0X6W4   A0A1B6C112   A0A1B6DMG2   A0A1Y1K0S4   A0A1W4WJ38   A0A1W4WJ20   A0A1B6GBE1   A0A1J1I8S3   A0A0K8VHL7   A0A336LSF5   A0A0C9RPE8   U4TWT5   N6TQJ7   A0A0K8VN84   A0A0A1X885   A0A034VS87   A0A0C9R2I4   A0A139WEB7   E2AP44   E2BAB1   A0A232F3N7   W8BII4   K7IYE9   A0A2M3ZLV2   A0A1L8DDF2   A0A2M3ZLS5   A0A2M4A3F4   A0A1L8DDI1   A0A1L8DEZ3   A0A1L8DF41   A0A026VT44   A0A182J950   W5JPD2   A0A195DN52   A0A1E1XQS6   A0A182SE38   A0A1E1X6D3   F4W4F6   A0A151WYX9   A0A195BHD7   A0A182K6H9   A0A131XN56   A0A182N108   A0A182RV51   A0A182W4Q7   A0A158P373   A0A210QNW6   A0A195F0E0   A0A182QU36   A0A131YW06   A0A084VAB2   A0A224Z8K8   A0A195CD28   A0A182Y7H2   A0A182MS89   A0A182XLP5   V4A250   A0A182VLE1   A0A182IA56   A0A182TSQ3   A0A2R5LEM3   Q7Z014   A0A182PQ61   F7ITZ5   A0A1S4G9C4   A0A0P4W0Z3   A0A0P4W4G5   A0A0P4VVR6   A0A2C9M3S8   A0A293M4R7   A0A293LIL5  

KEGG

101744920    K21988 transmembrane channel-like protein | (RefSeq) transmembrane channel-like protein 3

GO

GO:0005887   GO:0016021   GO:0005216   GO:0008381   GO:0005622   GO:0005840   GO:0006412   GO:0043547   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR23302  

Length:

380

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

113.06998

Exp number, first 60 AAs:

21.7716

Total prob of N-in:

0.03672

POSSIBLE N-term signal

sequence

outside

1  -  27

TMhelix

28  -  50

inside

51  -  69

TMhelix

70  -  92

outside

93  -  118

TMhelix

119  -  141

inside

142  -  166

TMhelix

167  -  189

outside

190  -  226

TMhelix

227  -  249

inside

250  -  380

 

 

Pi

203.437217

Theta

179.070566

Tajima's D

-1.851523

CLR

318.959474

CSRT

0.0243987800609969

Interpretation

Possibly Positive selection