Gene

KWMTBOMO10049  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005684

Annotation

60S_ribosomal_protein_L38_[Bombyx_mori]

Location

Bomo_Chr17(-):1108628-1111280      View in EpiBrowser

Full name

60S ribosomal protein L38      

Location in the cell

Cytoplasmic   Reliability : 1.093 Mitochondrial   Reliability : 1.674 Nuclear   Reliability : 1.29

CDS

ATGCCGCGTGAAATCAAAGATATCAAAGACTTTTTAATTAAGGCGAGGAGGAAAGACGCCAAATCGGTCAAAATAAAGAAGAACCCTGAGAATGTCAAGTTCAAGGTTCGATGCTCAAGGTTCCTGTACACCCTGGTCATCACTGACAAAGAGAAGGCTGAGAAACTTAAGCAGAGTTTACCTCCAGGTCTCCAAGTTAAAGAAGTAAAGTGA

Protein

MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK

Similarity

Belongs to the eukaryotic ribosomal protein eL38 family.

Keywords

Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L38

Uniprot

Q5UAP8   G0ZEH5   E3UKP1   E7DZ57   D1LYP2   A0A212ET85   + More
A0A2A4JC42   Q6F450   A0A2W1BB34   Q5MGL3   A0A2R7WYM9   A0A2J7RPQ2   R4WDA6   A0A2H1VG27   I4DMV8   I4DJ74   A0A224XUF4   I3VPG2   A0A0N7Z9C5   A0A0V0G2U9   A0A023FCL4   A0A069DV59   K7ISJ4   Q962S5   A0A067R2H1   A0A2P8Y5R0   A0A194QGE0   Q56FC8   A2I469   A0A2A3E400   A0A087ZQN9   Q4GX87   A0A0J7L551   A0A158NHR8   G3CJR1   A0A1D2NHF2   A0A1L8DSE1   B7U4P6   J9JWT6   E9IJF7   E2BZ14   E2AZR6   A0A195FFR3   G1K0C5   A0A0M9A6P8   F4WY86   A0A0K8TPN6   A0A195EGB4   A0A026WWL3   A0A0L7QY30   D6WVV8   A0A195AXE3   J9K285   H9J842   A0A164ZDU9   Q4GX86   A0A0U2KDV9   A0A0P6EYX9   A0A3Q8UDM2   A0A1W7R9Q6   A0A0P5IPK6   A0A0K2UI23   A0A226DHJ8   A0A0U2UTU2   D1M836   A0A0U2T5J2   Q4GX88   A0A0U2V5C7   A0A0P4YFD0   A0A0P5KZT7   A0A0P5IJL2   A0A0U2T934   A0A0P6CIQ6   A0A0P5IH36   A0A0U2UML9   C9X4I9   A0A0P5N153   A0A060YGY4   A0A0U2V0S6   J9B4T0   A0A044U1D9   A0A0K0J070   A0A0N4TSP6   I0FU17   A0A1L8EGP1   A0A0N0PDU9   A0A3Q7QL33   A0A1I8MVG7   C4N177   A0A023ED42   Q1HRT4   A0A0U2UEL6   A0A183ISV1   A0A182E374   A0A0N4V6H8   A0A2J7PU11   I3JMG5   A0EZZ9   A0A3B5KM97   A0A3Q2T218  

Pubmed

22118469    28756777    16023793    23691247    22651552    23049752    + More
27129103    25474469    26334808    20075255    14668217    24845553    29403074    26354079    21347285    21058630    27289101    21282665    20798317    21736942    21719571    26369729    24508170    18362917    19820115    19121390    26621068    30517877    24755649    17885136    25319552    25315136    19576987    24945155    26483478    17204158    17510324    22919073    25186727    21551351   

EMBL

AY769310    JF265053    AEL28884.1    HM449915    ADO33050.1    HQ424760    + More
ADT80704.1    GU084316    ACY95349.1    AGBW02012643    OWR44664.1    NWSH01002116    PCG69124.1    AB180440    KZ150179    PZC72542.1    AY829773    KK855890    PTY24270.1    NEVH01001357    PNF42813.1    AK417379    BAN20594.1    ODYU01002350    SOQ39731.1    AK402626    BAM19248.1    AK401342    BAM17964.1    GFTR01000249    JAW16177.1    JW050244    AFK82401.1    GDKW01000931    JAI55664.1    GECL01003658    JAP02466.1    GBBI01000174    JAC18538.1    GBGD01003695    JAC85194.1    AF400201    KK852804    KDR16197.1    PYGN01000896    PSN39590.1    KQ459232    KPJ02516.1    AY961572    EF070572    KZ288386    PBC26483.1    AM049136    LBMM01000686    KMQ97761.1    HP639828    AEM97965.1    LJIJ01000039    ODN04642.1    GFDF01004790    JAV09294.1    FJ430680    ACJ50594.1    ABLF02035741    GL763782    EFZ19295.1    GL451549    EFN79053.1    GL444277    EFN61045.1    KQ981636    KYN38864.1    JO495006    AEL79236.1    KQ435724    KOX78350.1    GL888439    EGI60843.1    GDAI01001231    JAI16372.1    KQ978957    KYN27295.1    KK107078    EZA60447.1    KQ414699    KOC63454.1    KQ971358    EFA08624.1    KQ976725    KYM76624.1    ABLF02037357    BABH01020396    LRGB01000725    KZS16241.1    AM049137    KT754813    KT754814    KT755072    KT755108    ALS04906.1    GDIQ01057330    JAN37407.1    MK049524    AZL95823.1    GFAH01000512    JAV47877.1    GDIQ01212574    JAK39151.1    HACA01020394    CDW37755.1    LNIX01000021    OXA43656.1    KT755253    KT755266    ALS05087.1    GU120460    ACY71310.1    KT754935    ALS04769.1    AM049135    CAJ17435.1    KT754376    KT754377    KT754378    KT754379    KT754380    ALS04213.1    GDIP01228205    JAI95196.1    GDIQ01177084    JAK74641.1    GDIQ01212575    JAK39150.1    KT755372    KT755398    ALS05232.1    GDIP01003908    JAM99807.1    GDIQ01212572    JAK39153.1    KT754307    KT754308    ALS04142.1    FN392267    CAY61905.1    GDIQ01159944    JAK91781.1    FR910907    CDQ90757.1    KT754306    ALS04140.1    ADBV01003180    EJW82020.1    CMVM020000164    LN856993    CRZ25034.1    UZAD01013244    VDN92877.1    JV047872    AFI37943.1    GFDG01000938    JAV17861.1    KQ460044    KPJ18285.1    EZ048850    ACN69142.1    JXUM01016229    GAPW01006847    KQ560452    JAC06751.1    KXJ82354.1    DQ440010    CH477342    KT754305    ALS04139.1    UZAM01009963    VDP10599.1    UYRW01000381    VDK66281.1    UXUI01008176    VDD90723.1    NEVH01021216    PNF19806.1    AERX01030833    DQ848929    ABJ98663.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000235965    UP000002358    UP000027135    + More
UP000245037    UP000053268    UP000242457    UP000005203    UP000036403    UP000005205    UP000094527    UP000007819    UP000008237    UP000000311    UP000078541    UP000053105    UP000007755    UP000078492    UP000053097    UP000053825    UP000007266    UP000078540    UP000076858    UP000198287    UP000193380    UP000004810    UP000024404    UP000006672    UP000038020    UP000278627    UP000053240    UP000286641    UP000095301    UP000095300    UP000069940    UP000249989    UP000008820    UP000050793    UP000077448    UP000271087    UP000038041    UP000274131    UP000005207    UP000005226    UP000265000   

PRIDE

Q5UAP8    A0A087ZQN9    H9J842   

Pfam

PF01781   Ribosomal_L38e

Interpro

IPR002675   Ribosomal_L38e        + More
IPR038464   Ribosomal_L38e_sf       

Gene 3D

3.30.720.90    

ProteinModelPortal

Q5UAP8   G0ZEH5   E3UKP1   E7DZ57   D1LYP2   A0A212ET85   + More
A0A2A4JC42   Q6F450   A0A2W1BB34   Q5MGL3   A0A2R7WYM9   A0A2J7RPQ2   R4WDA6   A0A2H1VG27   I4DMV8   I4DJ74   A0A224XUF4   I3VPG2   A0A0N7Z9C5   A0A0V0G2U9   A0A023FCL4   A0A069DV59   K7ISJ4   Q962S5   A0A067R2H1   A0A2P8Y5R0   A0A194QGE0   Q56FC8   A2I469   A0A2A3E400   A0A087ZQN9   Q4GX87   A0A0J7L551   A0A158NHR8   G3CJR1   A0A1D2NHF2   A0A1L8DSE1   B7U4P6   J9JWT6   E9IJF7   E2BZ14   E2AZR6   A0A195FFR3   G1K0C5   A0A0M9A6P8   F4WY86   A0A0K8TPN6   A0A195EGB4   A0A026WWL3   A0A0L7QY30   D6WVV8   A0A195AXE3   J9K285   H9J842   A0A164ZDU9   Q4GX86   A0A0U2KDV9   A0A0P6EYX9   A0A3Q8UDM2   A0A1W7R9Q6   A0A0P5IPK6   A0A0K2UI23   A0A226DHJ8   A0A0U2UTU2   D1M836   A0A0U2T5J2   Q4GX88   A0A0U2V5C7   A0A0P4YFD0   A0A0P5KZT7   A0A0P5IJL2   A0A0U2T934   A0A0P6CIQ6   A0A0P5IH36   A0A0U2UML9   C9X4I9   A0A0P5N153   A0A060YGY4   A0A0U2V0S6   J9B4T0   A0A044U1D9   A0A0K0J070   A0A0N4TSP6   I0FU17   A0A1L8EGP1   A0A0N0PDU9   A0A3Q7QL33   A0A1I8MVG7   C4N177   A0A023ED42   Q1HRT4   A0A0U2UEL6   A0A183ISV1   A0A182E374   A0A0N4V6H8   A0A2J7PU11   I3JMG5   A0EZZ9   A0A3B5KM97   A0A3Q2T218  

PDB

4V6W     E-value=6.48498e-17,     Score=207

KEGG

693118    K02923 large subunit ribosomal protein L38e | (RefSeq) RpL38; ribosomal protein L38

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0022625   GO:0043009   GO:0005622   GO:0043547   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR10965  

Length:

70

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00015

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.54449

inside

1  -  70

 

 

Pi

146.846792

Theta

175.83395

Tajima's D

-0.499106

CLR

0.498371

CSRT

0.248187590620469

Interpretation

Uncertain