SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10048  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005685
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_chaoptin-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.195 PlasmaMembrane   Reliability : 1.841
 

Sequence

CDS
ATGAGGCGAGGTGCGATGCAGCAATGGTCAGCGTGCTGGATCCACGCGGCGCTCGCTGTGATGCTGTTGCCCGGAGTGAGGGCTCCAGCCCGTCCCTGTCCAAGGAACTCGCTCTGCTATTGTCGCGCGGACCACTTCGCCTGCAACTACGTTCCGTTCCATCGTTTCCCAGAAACAGATCCAGAAGTATGGCACGTGTCAGTGTCGCAAGCTCGCTTGGGTACCCTGGGTGAGGGTGCACTGGATGGGAGACGGCTGCGGACCCTGGTGCTGGTAGCTTCACATCTATACCACATAGAACCCGGAGCTTTTTCGTCAATGACGTCAACATTGGCGTCCTTGGACTTAGCCAACAATGAATTCACAGAAATCCCTATCGAAGCTCTTCGAGAATTAAAAGTGTTGAATTGGCTCAATTTGCAAAACAATTACATTAGCGAATTAAATTCGGATTTTGACTGGGGTTTCTTATCCGATTCTTTGAGCAGCCTATCATTAAGCAACAATCATCTGTATATCCTGAACGAAGGTTCATTATCGTCACTACATCAGCTGGCCCAGCTCGATCTTGACGGGAATCGATTACATGCCGTCAACCCGAATTCGCTGCCACAGTCATTGGCATTGCTTCGTCTGTCTGATAACATATTGACATACTTCCCATGTCTAACGTTGGCTGGGTTACCACGTCTACTACACCTTCACCTCAGAAATAACATACTAAGACCTTCCTTAAACCACACGTGCAGGGGTGAACGCACCAAAATAGAGTCATTAGATTTGAGTCACAATGAGCTGGATGATCGTTTTGTTCTCAGCTTCCAGCACAGATTACAGCTGAAGCAATTAATATTAGACTTTAATGATTTTACGGCCATTCCTCCTTTCGTTATGGACAGCGGTCGGTTAGAGAAATTATCAATTTCTTACAATAAATTAAGCTATGTGTCAGATGCGATGATCCATGCATTGAAAAGAGATTTGGAAAGATTGGAACTGGATTACAATGAAATAGCTATTCTATCAGGTAGTGTTAAGGAGATGGTGAGACTTAAGCATTTGTCGCTAGCTTACAATCACCTAGAAGAGATCAATGATCTTCCTCCAAATTTGTATTCTTTGTCATTGTCCGGGAATTTCCTGTTGACTTTTCCAGTGGGCTTAAGTACTTTAAGTCCTGCGAGTCTGGCGTATTTAGATCTCGGATATAATCAAATATCGGTCTTGTCCCCCGAATCCTTCGGTGTGTGGTCGGAAGCACTCGTAACTCTAAATCTCAAAGGGAATAGGATCACACAGCTCGTGGCGGGGTCCTTCCCTTTAACTTTACCCTTAAGAGAACTTGTACTCAGCTTCAATGACCTTTATTACGTAGATCCAAATGCTTTTGCAAATCTAACGATGTTGCAAGTCTTAGAACTATCTTCGACTTTATTCAGTGGAGAATTTCCAGTGTCTTCGTATTTCGATAATCTGACTTGGCTGAGTTTAGATAACAATAACGTTCATTACGTCTCGTCCGGGGACCTCCAGAACTTTCCCTCACTACAATATCTCAATTTAGAGTTCAATAAGATAACAGAGTTTCCTAGTGAAGTCACTCTAACGTCTGATCGATCGAACAGACTTAAAGAACTGAGACTATCATATAATTACATAAGCAAGATAAATTCGGAATTCCTCTCCGATTTAGTGGAGTTGCAAAGTTTAGATTTATCGTATAATCGCGTGTACAATATTAGCGAGAACGGTTTCTCGAATTTACACAATTTGGTTTATTTGAGCTTGTCCGGGAACGTTGTGGAGTTCATAGCGGAACGTGCGTTCCGACGCTTGCCCAAATTAGAGGCGTTAGACATGCACGAGAATAATTTACTCGTATTCTCTACGGACTGTTTCGAAAATGTTTCCAACGATGAAACAAACTTTTCGGTAAACGTTAGCCGAAATAGAATATCCGTGTTGACCGGCGGGCTGGCCGTTTCAATAAATACACTCGATCTATCCTTTAATTTTTTAGAGAGCGTCTCACGACATTTTTTTGACTCAATCGGACCAGCCTTGCGACAGTTAATTGTTTCGCACAACAGATTAATGCACCTCGATAACATTGCGTTTGGCTTCCTGCCATCTCTAGAAGTATTGATGCTACACGATAACAGTATAAGTGCTATTAAAAAGAAAGCCTTCGCTGAGATGTCGTCGCTTCAAATCCTGGATCTCTCACGTAATAAAATCAGCCAATTAGCTGTAGAGCAATTTCATAATATGCGACGCTTAAGGCATCTGCGCTTGGCGCGAAATGTCCTGCGATCTTTGCCACGAGATGTATTTAAAAACACCATTCTCGAACATTTAGACCTTAATGACAATCATATTGCAATATTTCCCAGTAGTGCTTTGGCTCAAGTCGGTTTCACTTTAAGAAGACTGGAACTAGCTCAAAATCACCTAGAATATCTCGACGCGGCGATGTTCCACGCTATCGCTTTTCTTCACGAGCTGACACTCGCTCGTAATGCTCTTACAGTACTTTCGGATAACACATTCGCTGGATTAACCAGACTGCGACAGTTAGACTTATCACATAATCCCGTTAAGACGAATTTCAAGGAACTGTTTCACAACCTTCCTCGACTGCGCAAGTTGATCCTCGCCGACGCTGGCCTTAAGAGTATACCGCATTTGCCACTTGCTAATCTAACTGAACTGGATCTGAGTGGTAACTTCATGTCATCTTTTCGGGAGCCTGAAGTGAGGCGATTGATGAATCTACGCGCGCTGAACTTGGCAAGAAATAAATTTACGTCATTGCAACCAGCCATGTGGGCGGCGTTACCGAAATTGTGTAACCTTGACGTATCACAGAACCCTATAGTCCGAGTGACTCGTGGATCATTCGAAGGTCTCGACCGCTTACTACATTTACGGATGCCACAGCTAAGGCAGTTAGAGGTGGTGGAGCCCCGAGCGTTCAGGCCATTAGTTTCTCTTCGGATTTTGGATTTAGAATCGCCCATTGGATCGGGTCGAGCAGAAGCATCCCTTGCCGATATTTCTCTATCAGTACCCACACTGGAATCTCTCTCTGTTTTGGTCAGAGAAAGTGTTCTCGATACCCAACTACATGGGCTAAGAGCACCGAAATTGCGGTCACTTGAGGTGCATGGAGTGGCGTTGCGTCGTGTCTCTGTGCATGCGTTTGTATCTTTGGGCCAGCAGCGTGCCTTGACTCTACGATTGCGACGAACTAGCATCACTGCACTCCCACCAGGTATTGTGAAACCCGTGGCCCGTGTCCCACACCTGGCACTGGACTTCAGTGCTAACCAGTTAGTTACCTTTGGTCCGGCGACACTCTACCCAAACTTGACTGGTTGGAACCGTCTCGCAACAAAACTCCTCCCAGGAGGCCTCATACTATCAGAGAATCCACTCCGTTGTGGTTGCTCTGTATCGTGGGTGGGGGCTTGGTTGCGCCGTTGGACAGCTGAGGTCGGAGGCTGGTCAAGAGACGGTCGTGATGCAGCACGACGTAGCGCGTGCATGATATCCGGGACACTAGTTCCACTCCTGTCTCTGGAGGCAGATGAGGCGGAGTGTCACGCCAGTGCACTCTCAAGTAGAGCATTAACACATCGTCCTCACACAATGAGATCATTTCAATGGATCGTGTTATTATATGCTCTGAGTTAG
Protein
MRRGAMQQWSACWIHAALAVMLLPGVRAPARPCPRNSLCYCRADHFACNYVPFHRFPETDPEVWHVSVSQARLGTLGEGALDGRRLRTLVLVASHLYHIEPGAFSSMTSTLASLDLANNEFTEIPIEALRELKVLNWLNLQNNYISELNSDFDWGFLSDSLSSLSLSNNHLYILNEGSLSSLHQLAQLDLDGNRLHAVNPNSLPQSLALLRLSDNILTYFPCLTLAGLPRLLHLHLRNNILRPSLNHTCRGERTKIESLDLSHNELDDRFVLSFQHRLQLKQLILDFNDFTAIPPFVMDSGRLEKLSISYNKLSYVSDAMIHALKRDLERLELDYNEIAILSGSVKEMVRLKHLSLAYNHLEEINDLPPNLYSLSLSGNFLLTFPVGLSTLSPASLAYLDLGYNQISVLSPESFGVWSEALVTLNLKGNRITQLVAGSFPLTLPLRELVLSFNDLYYVDPNAFANLTMLQVLELSSTLFSGEFPVSSYFDNLTWLSLDNNNVHYVSSGDLQNFPSLQYLNLEFNKITEFPSEVTLTSDRSNRLKELRLSYNYISKINSEFLSDLVELQSLDLSYNRVYNISENGFSNLHNLVYLSLSGNVVEFIAERAFRRLPKLEALDMHENNLLVFSTDCFENVSNDETNFSVNVSRNRISVLTGGLAVSINTLDLSFNFLESVSRHFFDSIGPALRQLIVSHNRLMHLDNIAFGFLPSLEVLMLHDNSISAIKKKAFAEMSSLQILDLSRNKISQLAVEQFHNMRRLRHLRLARNVLRSLPRDVFKNTILEHLDLNDNHIAIFPSSALAQVGFTLRRLELAQNHLEYLDAAMFHAIAFLHELTLARNALTVLSDNTFAGLTRLRQLDLSHNPVKTNFKELFHNLPRLRKLILADAGLKSIPHLPLANLTELDLSGNFMSSFREPEVRRLMNLRALNLARNKFTSLQPAMWAALPKLCNLDVSQNPIVRVTRGSFEGLDRLLHLRMPQLRQLEVVEPRAFRPLVSLRILDLESPIGSGRAEASLADISLSVPTLESLSVLVRESVLDTQLHGLRAPKLRSLEVHGVALRRVSVHAFVSLGQQRALTLRLRRTSITALPPGIVKPVARVPHLALDFSANQLVTFGPATLYPNLTGWNRLATKLLPGGLILSENPLRCGCSVSWVGAWLRRWTAEVGGWSRDGRDAARRSACMISGTLVPLLSLEADEAECHASALSSRALTHRPHTMRSFQWIVLLYALS

Summary

EMBL
BABH01020400    KQ460044    KPJ18286.1    NWSH01001260    PCG71950.1    KZ150179    + More
PZC72541.1    ODYU01006995    SOQ49347.1    AGBW02014188    OWR42121.1    NWSH01001061    PCG72850.1    RSAL01000168    RVE45242.1    KQ459232    KPJ02766.1    DS235252    EEB14009.1    AGBW02012643    OWR44663.1    JTDY01000063    KOB79092.1    KQ971321    EFA01333.2    NEVH01024535    PNF16900.1    PYGN01000441    PSN46305.1    KK853075    KDR11757.1    GFXV01002689    MBW14494.1    GGMS01015681    MBY84884.1    CH916368    EDW02850.1    CH379058    KRT03481.1    CH479184    EDW37056.1    EAL34415.3    KRT03478.1    KRT03479.1    CH940649    EDW63645.1    GECZ01009379    JAS60390.1    KRF81223.1    CH902620    EDV31854.2    CM002910    KMY90345.1    CM000157    EDW89771.2    AJVK01005457    AJVK01005458    AJVK01005459    AJVK01005460    KPU73660.1    KPU73659.1    AE014134    AAF53442.5    AHN54467.1    KMY90346.1    CH933807    EDW11769.1    CH954177    EDV58005.1    KRJ98692.1    KRG02903.1    KQS70221.1    CH963913    EDW77486.2    CVRI01000058    CRL02651.1    JRES01000933    KNC27091.1    CH480818    EDW51808.1    ABLF02036257    KRT03480.1    AAAB01008984    EAA14838.3    KRF81222.1    JXJN01012425    JXJN01012426    JXJN01012427    OUUW01000040    SPP89930.1    UFQS01001542    UFQT01001542    SSX11402.1    SSX30970.1    UFQT01002584    SSX33715.1    CCAG010004606    CH477212    EAT47663.2    KQ434850    KZC08570.1    GL445407    EFN89635.1    DS231846    EDS36168.1    KZ288210    PBC32933.1    ATLV01014217    ATLV01014218    ATLV01014219    ATLV01014220    ATLV01014221    KE524948    KFB38458.1    GGMR01006009    MBY18628.1    KQ435711    KOX79465.1    AXCN02000623    APCN01003424    KK107218    QOIP01000001    EZA55162.1    RLU26481.1    GEDC01024952    JAS12346.1    ADMH02000956    ETN64579.1    ADTU01002189    KQ981042    KYN10101.1    GL439470    EFN67258.1    AXCM01000503    KQ978344    KYM94855.1    GL888424    EGI61143.1    KQ976716    KYM76840.1    AAZX01004127    KQ981805    KYN35630.1    KQ982431    KYQ56500.1    AJWK01035450    AJWK01035451   
Pfam
PF13855   LRR_8        + More
PF13516   LRR_6
PF00560   LRR_1
PF13306   LRR_5
PF00202   Aminotran_3
PF16087   DUF4817
PF12799   LRR_4
Interpro
IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001633   EAL_dom       
IPR026906   LRR_5       
IPR000483   Cys-rich_flank_reg_C       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR005814   Aminotrans_3       
IPR015424   PyrdxlP-dep_Trfase       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR032135   DUF4817       
IPR025875   Leu-rich_rpt_4       
SUPFAM
SSF53383   SSF53383       
Gene 3D
PDB
4KT1     E-value=2.18236e-27,     Score=309

Ontologies

Topology

SignalP
Position:   1 - 28,         Likelihood:  0.987354
 
 
Length:
1231
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8.1354599999999
Exp number, first 60 AAs:
7.99497
Total prob of N-in:
0.42331
outside
1  -  1231
 
 

Population Genetic Test Statistics

Pi
187.226744
Theta
160.147664
Tajima's D
0.122241
CLR
0.335894
CSRT
0.408879556022199
Interpretation
Uncertain
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