Gene

KWMTBOMO10046  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005686

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]

Location

Bomo_Chr17(-):840194-842269      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.715 PlasmaMembrane   Reliability : 1.299

CDS

ATGTACGTGACGGACGTGGCCATCCCGGCGGACACGGAGGTGTGCGACCTGCGGCTGGCGGCGGGCGGGCTGCTGGACGTGCTGCGCGCGCGCCTGCTGCACGCGCCCGCCGCGCCCGCGCGCTGCCTCATCGTGCTGCTCGACCACCTGCACCACCACTACCGCCGCCCGGCGCTCTTCCTGCACCACCCCGACATCCGCCTCAAGATATTTGAAATGATATTCTGCTTACGGGCGAACACGCTTAACTTCGTCGGCTTGCTGCCTGAAGGTCAGTTTTCGAGTCGAACCCGCGTCGTATGTTCTCCGTTCCTGCTGGTCGAGCCCCTAGGAGTGCGCGGACAGCAACATCAGAACCATCAACACAGAGATGTACCTCCGGTATGTGTTCAGCAGAACGTTTGTCTTGATCATTTATTTAGTTTCCAATTAACAGTTTTAGATTTTAAAAAAATAATTTAG

Protein

MYVTDVAIPADTEVCDLRLAAGGLLDVLRARLLHAPAAPARCLIVLLDHLHHHYRRPALFLHHPDIRLKIFEMIFCLRANTLNFVGLLPEGQFSSRTRVVCSPFLLVEPLGVRGQQHQNHQHRDVPPVCVQQNVCLDHLFSFQLTVLDFKKII

Uniprot

H9J844   A0A2W1BH62   A0A2H1VXQ9   A0A0L7LRT9   A0A212FF76   A0A0L7R520   + More
A0A154P5U1   A0A151WRN0   A0A151IS99   A0A088ADA5   F4WRA9   V9ILP0   A0A158NUP5   A0A2A3E2S5   A0A195BBK3   A0A0M9AAT6   E2BZ84   A0A151IG77   A0A310S9N2   A0A3L8DJ68   A0A026VUB2   H1ZYC5   H1ZYD2   A0A195FK85   H1ZYD3   B3NE34   A0A0J9RYM8   B4IA44   M9PD17   Q9U9B0   Q9VW83   Q7K0T0   A0A0J7L033   E2AD21   B4QRG4   A0A0K8VK68  

Pubmed

19121390    28756777    26227816    22118469    21719571    21347285    + More
20798317    30249741    24508170    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    10052455   

EMBL

BABH01020420    BABH01020421    BABH01020422    BABH01020423    BABH01020424    KZ150179    + More
PZC72537.1    ODYU01005093    SOQ45627.1    JTDY01000229    KOB78180.1    AGBW02008849    OWR52395.1    KQ414657    KOC65846.1    KQ434823    KZC07296.1    KQ982806    KYQ50457.1    KQ981085    KYN09595.1    GL888284    EGI63326.1    JR050293    AEY61224.1    ADTU01026650    ADTU01026651    ADTU01026652    KZ288467    PBC25401.1    KQ976532    KYM81590.1    KQ435698    KOX80745.1    GL451577    EFN78990.1    KQ977739    KYN00227.1    KQ762903    OAD55293.1    QOIP01000007    RLU20252.1    KK107942    EZA47091.1    FR870154    FR870155    FR870156    FR870157    CCB63112.1    CCB63113.1    CCB63114.1    CCB63115.1    FR870161    CCB63119.1    KQ981512    KYN40813.1    FR870153    FR870159    FR870160    FR870162    FR870163    FR870164    CCB63111.1    CCB63117.1    CCB63118.1    CCB63120.1    CCB63121.1    CCB63122.1    CH954178    EDV52458.1    CM002912    KMZ00688.1    CH480826    EDW44157.1    AE014296    AGB94782.1    AF172995    AAD48498.1    AAF49066.1    AY069603    AAL39748.2    LBMM01001707    KMQ95864.1    GL438658    EFN68657.1    CM000363    EDX11177.1    GDHF01013057    JAI39257.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000053825    UP000076502    UP000075809    + More
UP000078492    UP000005203    UP000007755    UP000005205    UP000242457    UP000078540    UP000053105    UP000008237    UP000078542    UP000279307    UP000053097    UP000078541    UP000008711    UP000001292    UP000000803    UP000036403    UP000000311    UP000000304   

PRIDE

H9J844    H1ZYC5    Q9U9B0    Q9VW83    Q7K0T0   

Pfam

PF02145   Rap_GAP        + More
PF03542   Tuberin
PF11864   DUF3384

Interpro

IPR024584   Tuberin_N        + More
IPR018515   Tuberin-type_domain       
IPR027107   Tuberin/Ral-act_asu       
IPR003913   Tuberin       
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       
IPR016024   ARM-type_fold       
IPR021133   HEAT_type_2       
IPR011989   ARM-like       

SUPFAM

SSF111347   SSF111347        + More
SSF48371   SSF48371       

Gene 3D

3.40.50.11210     1.25.10.10    

ProteinModelPortal

H9J844   A0A2W1BH62   A0A2H1VXQ9   A0A0L7LRT9   A0A212FF76   A0A0L7R520   + More
A0A154P5U1   A0A151WRN0   A0A151IS99   A0A088ADA5   F4WRA9   V9ILP0   A0A158NUP5   A0A2A3E2S5   A0A195BBK3   A0A0M9AAT6   E2BZ84   A0A151IG77   A0A310S9N2   A0A3L8DJ68   A0A026VUB2   H1ZYC5   H1ZYD2   A0A195FK85   H1ZYD3   B3NE34   A0A0J9RYM8   B4IA44   M9PD17   Q9U9B0   Q9VW83   Q7K0T0   A0A0J7L033   E2AD21   B4QRG4   A0A0K8VK68  

KEGG

101745506    K07207 tuberous sclerosis 2 | (RefSeq) tuberin

GO

GO:0033596   GO:0005634   GO:0032007   GO:0051056   GO:0005096   GO:0016021   GO:0042632   GO:0046621   GO:2000331   GO:0045886   GO:0051726   GO:0007165   GO:1902350   GO:0035069   GO:1904515   GO:0007584   GO:1904504   GO:0048477   GO:0046627   GO:0008340   GO:0008285   GO:0030308   GO:0045792   GO:1904262   GO:0071456   GO:0019900   GO:0001934   GO:0055088   GO:0043547   GO:0042325   GO:0010508   GO:0005829   GO:0009968   GO:0019901   GO:0005737   GO:0008484   GO:0008270   GO:0005488   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR10063  

Length:

153

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0957600000000002

Exp number, first 60 AAs:

0.0221

Total prob of N-in:

0.17149

outside

1  -  153

 

 

Pi

184.892064

Theta

144.103914

Tajima's D

0.346016

CLR

0.079984

CSRT

0.469176541172941

Interpretation

Uncertain