Silkworm Genome Informatics Database

Gene

KWMTBOMO10045

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]

Location

Bomo_Chr17(-):822626-838849 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.333

CDS

ATGATCTCAGACCGCAGCCTGAACTTCCCGGAGTGTCTGCGCACGTGCAAAGGCGGCAAGCTGCTGGTGTCGGAGTTCCACGGCACGGCGCTGCCCGCGCTGGCCGCGCTGGCGCCCTACCACAGCTGCCTCGAGCCGCAGACGCAGCAGCGGATCGTGCGCTGCCTGCTCAAGTACGGCATGGTGCTGCGCTCGCCGCAGCCCTACATCAACGCGCTCACCATCTTCACGCTGGAGACGCGCGACACGATGGTGAAGATGCTGCCCGAGGTGCTGCTGGACCTGTCCAAGATCTCGGACACGAAGGCCATAGCGAGCCCCATGCTGGAGTTCCTGTCGACGCTGACGCGGCTGCCGAAGGTGTTCGCGTCGTTCGTGGAGGACCAGTACATGTCGGTGTTCGCCATCCTGCTGCCGTACACCAACCCGTCGCGCTACAACCACTACGCCGTGTCGCTGGCGCACCACGTCATCGCGGCCTGGTTCCTCAAGTGCCGCCTCTCCTACCGCAGGAACTTCGTCAGGTTCATCATACACGGCCTGCACAACTACATCATCATGCCGTTCGAGGAGCAGCTGCAGTACAAGAGCAACTTCCAGCACGGCGCCGCCAACGAGGACTCCTCCAACCGGCAGCGGAGCTCCAGTCTGGGCTCCCGCGCCGTGCCGCAGGTGGCCATCGGGCGCGGCGGGCCCTCCGCCTCCGCCGCCTTCCACGTGGAGCTCACGGAGACGTGCGTGGACCTGCTGGCGCGGTACGCCACCACGCCCTGCACCGTCAAGCCGCAGAGGAGCGATCTAGCGGAATTTCTGTTCAACGGCGGCCAGTCGATGACGTGGCTGGTGGGCCACAAGCTCGTCACCATCACCACGTCCGGCTGCTTGCAGAACTCACTCAAGCAGGGACTTTGCGACAGGTGCGCGGCGCTGTGCAAGCAGCACGCGGAGAGCGCGGCCGGCCCGCTGCCGCCGCTGCGACCCGCCGCCTCTGCCGCACCCGCCGCGCCTGCCGCATCTGCCGCACCCACCGCGCTCGCCGCCAACGCCGCATCCGCCGGCGCGTCGCAGACACAGCTTAATGAGTCGACGAGCGACAGCCAGACAACCGAGGACAGCCCGTCGCAAGCACAAAACCCGCCCGAAGTAAAACGCTACAGCAAGCGGTCGCTGCAGCACAGCCGCTCCACGGAGACCAGCTGCTCGTCCCTGTCATGCTGCGACGCCCCCCTCCTGCCGCCCACCAGCGGACACACCACCAGACAAAATTCATCGGAGAACAATAAGACAACAGATCCTCTAGTCGAAGTCCTCAACCAATTCTCACAGCGGTTCGAAAGGATATCCAAGGAGGTGGACACGGACGACACGAGCTGGTCGCGCGTGGGCGAGCTCGCGGGAGGGGGGGCGTGCCCGTGCTGGTGCGGGGGGTGGGCGGAGATACACGTGCGCTCGCCCACCGGCGACGTCAGCTGGGTCATGCGGGTGCAGAACCAGATGAACTGGGACTACCAGCTAGAGTCGCCGCTACAAGAAGTGGCGGCGCTACTCAACCCGATGATATTTCATCCCTCTCCGCCCCCCGCCGCGCCGCCCCCCGCGTCCTGTGTCGACCCCCCCGCGCCCTTCACGCCACCGCCATCTAACGACGACAACAAACAAGAGCAGGCGCAGTCCCGGGCGGAGATCGAACCGCCGAGCCGCTCGGCCCTCGACCTGCACAAATCCAACTCTGATACCGTCGTGTCCAAGCCGCTGCTGCACCAGCCCCACAGGATGAGTACGCAGCCGATCAACATCCCCGGGTCTCCGCAGAGACAGGGCTCGACCAGCGCCGCCGGCGACGACGACATCCTGCTCCTCGCACAGGAGGGGAAGTCCCGCCACCCGGTGCGTCGCTCGAACTCTTCTCCGGAGATGTCGTCCTCGTGGAAGCTGAGTGCGCAGCCTAAGCTCCAGGACGAAGAACTAGACGAGATGATCCTCCTCCCGGGAGTCGAACCCACGACGCCGGCCGCGTCCATGCACGCGTCGAAGAAGGCGGCGAAGAAAAGCGACATGCGCGTGTCGTGCGAGGCCATCCCCGAGGAGATGTGCGGCACGTCGCCGCTCGCCGCGCACCCGCACCTCGTCACCTACAAGTCGGACCCTGCAGTAACGAGCGAGCCGCTGTCGTGTGCAGGCACGGGCCACGCCGCGGGCGGAGCGGGCGCGGACAGCGGGCAGCGCGCCGCCGCCGACGACACCGCGCACCACCAGCTGCAGAAGGTAACGCGCCTGCTCGTACTACTACTATGCTCAGTGTGGAATGCGGGAACTCGGCTAAATAATTACAAACTAGTGGTCGCTCGGTAA

Protein

MISDRSLNFPECLRTCKGGKLLVSEFHGTALPALAALAPYHSCLEPQTQQRIVRCLLKYGMVLRSPQPYINALTIFTLETRDTMVKMLPEVLLDLSKISDTKAIASPMLEFLSTLTRLPKVFASFVEDQYMSVFAILLPYTNPSRYNHYAVSLAHHVIAAWFLKCRLSYRRNFVRFIIHGLHNYIIMPFEEQLQYKSNFQHGAANEDSSNRQRSSSLGSRAVPQVAIGRGGPSASAAFHVELTETCVDLLARYATTPCTVKPQRSDLAEFLFNGGQSMTWLVGHKLVTITTSGCLQNSLKQGLCDRCAALCKQHAESAAGPLPPLRPAASAAPAAPAASAAPTALAANAASAGASQTQLNESTSDSQTTEDSPSQAQNPPEVKRYSKRSLQHSRSTETSCSSLSCCDAPLLPPTSGHTTRQNSSENNKTTDPLVEVLNQFSQRFERISKEVDTDDTSWSRVGELAGGGACPCWCGGWAEIHVRSPTGDVSWVMRVQNQMNWDYQLESPLQEVAALLNPMIFHPSPPPAAPPPASCVDPPAPFTPPPSNDDNKQEQAQSRAEIEPPSRSALDLHKSNSDTVVSKPLLHQPHRMSTQPINIPGSPQRQGSTSAAGDDDILLLAQEGKSRHPVRRSNSSPEMSSSWKLSAQPKLQDEELDEMILLPGVEPTTPAASMHASKKAAKKSDMRVSCEAIPEEMCGTSPLAAHPHLVTYKSDPAVTSEPLSCAGTGHAAGGAGADSGQRAAADDTAHHQLQKVTRLLVLLLCSVWNAGTRLNNYKLVVAR

Uniprot

H9J844 A0A0N1IQ05

Pubmed

19121390 26354079

EMBL

BABH01020420 BABH01020421 BABH01020422 BABH01020423 BABH01020424 KQ460044 + More
KPJ18291.1

Proteomes

UP000005204 UP000053240

PRIDE

H9J844

Pfam

PF02145   Rap_GAP        + More
PF03542   Tuberin
PF11864   DUF3384

Interpro

IPR024584   Tuberin_N        + More
IPR018515   Tuberin-type_domain
IPR027107   Tuberin/Ral-act_asu
IPR003913   Tuberin
IPR000331   Rap_GAP_dom
IPR035974   Rap/Ran-GAP_sf
IPR016024   ARM-type_fold

SUPFAM

SSF111347 SSF111347 + More
SSF48371 SSF48371

Gene 3D

3.40.50.11210

ProteinModelPortal

H9J844 A0A0N1IQ05

KEGG

101745506 K07207 tuberous sclerosis 2 | (RefSeq) tuberin

GO

GO:0033596 GO:0005634 GO:0032007 GO:0051056 GO:0005096 GO:0043547 GO:0008484 GO:0008270 GO:0005488 GO:0004672 GO:0030677 GO:0016155 GO:0003824

PANTHER

PTHR10063

Length:

783

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.34213

Exp number, first 60 AAs:

0.14035

Total prob of N-in:

0.01018

outside

1 - 783

Pi

280.228605

Theta

171.854443

Tajima's D

0.811472

CLR

1.309668

CSRT

0.605419729013549

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics