Gene

KWMTBOMO10044  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005686

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]

Location

Bomo_Chr17(-):814580-820389      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.558

CDS

ATGAGCACATACCCCATAACGCCCCCGGTGCCTGGTGAGAGCCCGACGACCCTGAGTCCGCTGTCGCAGCGGCCGCTCCGTGTCAGCAGCGCGCAGGACCAGCGCACCATCAAGAACCTGGACCTCATGCCGCCCATCGAGACCTACAAGATCGGCGTGCTCTACGTGGCCCCGGGGCAGCAGGACAGCGAGGACGCCATCCTGCAGAACGAGTACGGCAGCGTCAGATACTCCGAGTTCCTGACGCAGCTCGGCACCCTGGTGTCGCTGGAAGGCGAGGACGAGCAGGAGCACCCGGAGCTGTTCCTCAACCTGGAGAAGGGCGGCAAGGACGGTCGGTACACCTACGTGTGGACCGACGACATCATGCAGGTGCTGTTCCACGTGGCGACGGCCATGCCCACGTGCGCCAGCGACCCCAGCTGCAACGAGAAGCGCAAGTACATCGGGAACGACTACGTGTCCATCGTGTACAACGACTCCGGAGCAGACTTCAACATCCACACCATCAAGGGCCAGTTCAATCTGTGCATCGTGGTGGTGGAGCCGTACGAGCACGGCATGAACCGCGTGCTGCTGAAGACCAAGGACGAGCGCATCCGCACCAAGTTCCTGGCGCACCTGGACTCGCAGCACGTGGCCGTGTCCGACCACAACGTGGCGCTGCTCGCCCGCCAGATGGCTCTGCATTGCGCGCTGGCGTCCCAGATCTCGGCGACGCTGAGCTCTGGCGGCGGCTCGCAGCCCTACGCGTCCAACTGGCTGGCGCGCCTGCGCCTCATCAAGATGCTGCGCGGGCGCGTGCAGGCCTCCCGCCTGGCGGCCGCCGCGCGAGCCCCCGCGCCCTACGCCTCCACGCCCGACCTGGCGCAGCGCGTCGCCATCGACGACTTCAACGACTACACCTAG

Protein

MSTYPITPPVPGESPTTLSPLSQRPLRVSSAQDQRTIKNLDLMPPIETYKIGVLYVAPGQQDSEDAILQNEYGSVRYSEFLTQLGTLVSLEGEDEQEHPELFLNLEKGGKDGRYTYVWTDDIMQVLFHVATAMPTCASDPSCNEKRKYIGNDYVSIVYNDSGADFNIHTIKGQFNLCIVVVEPYEHGMNRVLLKTKDERIRTKFLAHLDSQHVAVSDHNVALLARQMALHCALASQISATLSSGGGSQPYASNWLARLRLIKMLRGRVQASRLAAAARAPAPYASTPDLAQRVAIDDFNDYT

Uniprot

H9J844   A0A2A4JK21   A0A2A4JIV4   A0A2W1BH62   A0A194QGF0   A0A212FF76   + More
A0A0N1IIZ7   A0A2H1VXQ9   A0A1B6CBK9   A0A2J7PKX8   A0A2P8YFZ1   A0A182TYJ2   A0A2J7PKX2   A0A034VV56   A0A067R1A4   A0A0C9R8H9   A0A224XHV0   A0A0N7Z993   A0A0J7L033   A0A2A3E2S5   A0A088ADA5   A0A0K8W394   A0A310S9N2   A0A0L7R520   A0A1B6GE37   A0A0M9AAT6   A0A2H8TG98   A0A0A1XPT7   A0A154P5U1   A0A182YAZ3   A0A182KKZ7   A0A1S4H5U5   Q7PSN6   A0A2S2QLZ4   A0A182WDM1   A0A182QGL9   A0A182PJM1   W8AW74   A0A182RAK9   W8BIU1   A0A182N280   A0A182G514   A0A182JXY2   A0A026X306   B0WLG2   J9LUZ1   E2AD21   A0A0A9YCP4   E0VSQ1   A0A2S2PX60   A0A1Q3F6F1   A0A1Q3F6E4   E9J5G5   A0A146MCR9   A0A1Y1N0Q7   A0A182X5Q7   A0A232F0T6   A0A1B6HJQ6   K7IN19   A0A1Y1N0U2   E2BZ84   A0A182FC04   A0A151IG77   A0A151IS99   A0A195FK85   A0A1B0B1R4   A0A1A9Z2X3   A0A1B0G914   A0A151WRN0   A0A1A9XYW4   A0A1A9UQQ2   A0A1W4W784   Q0IEY0   F4WRA9   Q6JJM2   A0A1S4FHG3   A0A195BBK3   A0A158NUP5   A0A084WM76   A0A1A9WRI4   W5JS09   A0A1B0DPR3   Q2M0Y0   A0A1I8Q0U0   H1ZYC5   H1ZYD2   H1ZYC9   H1ZYD3   B4GQY5   M9PD17   Q9U9B0   B4IA44   Q9VW83   Q7K0T0   A0A336MAX2   A0A0J9RYM8   A0A3B0JRC0   A0A2G8LJP3  

Pubmed

19121390    28756777    26354079    22118469    29403074    25348373    + More
24845553    27129103    25830018    25244985    20966253    12364791    24495485    26483478    24508170    20798317    25401762    20566863    21282665    26823975    28004739    28648823    20075255    17510324    21719571    15229322    21347285    24438588    20920257    23761445    15632085    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    10052455    22936249    29023486   

EMBL

BABH01020420    BABH01020421    BABH01020422    BABH01020423    BABH01020424    NWSH01001312    + More
PCG71750.1    PCG71749.1    KZ150179    PZC72537.1    KQ459232    KPJ02526.1    AGBW02008849    OWR52395.1    KQ460044    KPJ18292.1    ODYU01005093    SOQ45627.1    GEDC01026441    JAS10857.1    NEVH01024531    PNF16985.1    PYGN01000627    PSN43169.1    PNF16986.1    GAKP01013254    GAKP01013252    JAC45700.1    KK852784    KDR16585.1    GBYB01009172    JAG78939.1    GFTR01008807    JAW07619.1    GDKW01001187    JAI55408.1    LBMM01001707    KMQ95864.1    KZ288467    PBC25401.1    GDHF01006743    JAI45571.1    KQ762903    OAD55293.1    KQ414657    KOC65846.1    GECZ01009071    JAS60698.1    KQ435698    KOX80745.1    GFXV01001341    MBW13146.1    GBXI01001325    JAD12967.1    KQ434823    KZC07296.1    AAAB01008816    EAA05274.5    GGMS01009515    MBY78718.1    AXCN02001739    GAMC01013370    JAB93185.1    GAMC01013369    JAB93186.1    JXUM01144898    JXUM01144899    KQ569880    KXJ68493.1    KK107019    EZA62622.1    DS231984    EDS30455.1    ABLF02030207    GL438658    EFN68657.1    GBHO01016309    JAG27295.1    DS235755    EEB16407.1    GGMS01000747    MBY69950.1    GFDL01011918    JAV23127.1    GFDL01011946    JAV23099.1    GL768157    EFZ11937.1    GDHC01001051    JAQ17578.1    GEZM01015659    JAV91479.1    NNAY01001310    OXU24396.1    GECU01032770    JAS74936.1    GEZM01015662    JAV91474.1    GL451577    EFN78990.1    KQ977739    KYN00227.1    KQ981085    KYN09595.1    KQ981512    KYN40813.1    JXJN01007264    CCAG010002961    KQ982806    KYQ50457.1    CH477461    EAT40561.1    GL888284    EGI63326.1    AY438004    AAR97337.1    KQ976532    KYM81590.1    ADTU01026650    ADTU01026651    ADTU01026652    ATLV01024391    KE525351    KFB51320.1    ADMH02000597    ETN65710.1    AJVK01001589    AJVK01001590    AJVK01001591    AJVK01001592    CH379069    EAL30796.1    FR870154    FR870155    FR870156    FR870157    CCB63112.1    CCB63113.1    CCB63114.1    CCB63115.1    FR870161    CCB63119.1    FR870158    CCB63116.1    FR870153    FR870159    FR870160    FR870162    FR870163    FR870164    CCB63111.1    CCB63117.1    CCB63118.1    CCB63120.1    CCB63121.1    CCB63122.1    CH479188    EDW40170.1    AE014296    AGB94782.1    AF172995    AAD48498.1    CH480826    EDW44157.1    AAF49066.1    AY069603    AAL39748.2    UFQT01000833    SSX27484.1    CM002912    KMZ00688.1    OUUW01000009    SPP84697.1    MRZV01000055    PIK60476.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000235965    + More
UP000245037    UP000075902    UP000027135    UP000036403    UP000242457    UP000005203    UP000053825    UP000053105    UP000076502    UP000076408    UP000075882    UP000007062    UP000075920    UP000075886    UP000075885    UP000075900    UP000075884    UP000069940    UP000249989    UP000075881    UP000053097    UP000002320    UP000007819    UP000000311    UP000009046    UP000076407    UP000215335    UP000002358    UP000008237    UP000069272    UP000078542    UP000078492    UP000078541    UP000092460    UP000092445    UP000092444    UP000075809    UP000092443    UP000078200    UP000192221    UP000008820    UP000007755    UP000078540    UP000005205    UP000030765    UP000091820    UP000000673    UP000092462    UP000001819    UP000095300    UP000008744    UP000000803    UP000001292    UP000268350    UP000230750   

PRIDE

H9J844    H1ZYC5    Q9U9B0    Q9VW83    Q7K0T0   

Pfam

PF02145   Rap_GAP        + More
PF03542   Tuberin
PF11864   DUF3384

Interpro

IPR024584   Tuberin_N        + More
IPR018515   Tuberin-type_domain       
IPR027107   Tuberin/Ral-act_asu       
IPR003913   Tuberin       
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       
IPR016024   ARM-type_fold       
IPR021133   HEAT_type_2       
IPR011989   ARM-like       

SUPFAM

SSF111347   SSF111347        + More
SSF48371   SSF48371       

Gene 3D

3.40.50.11210     1.25.10.10    

ProteinModelPortal

H9J844   A0A2A4JK21   A0A2A4JIV4   A0A2W1BH62   A0A194QGF0   A0A212FF76   + More
A0A0N1IIZ7   A0A2H1VXQ9   A0A1B6CBK9   A0A2J7PKX8   A0A2P8YFZ1   A0A182TYJ2   A0A2J7PKX2   A0A034VV56   A0A067R1A4   A0A0C9R8H9   A0A224XHV0   A0A0N7Z993   A0A0J7L033   A0A2A3E2S5   A0A088ADA5   A0A0K8W394   A0A310S9N2   A0A0L7R520   A0A1B6GE37   A0A0M9AAT6   A0A2H8TG98   A0A0A1XPT7   A0A154P5U1   A0A182YAZ3   A0A182KKZ7   A0A1S4H5U5   Q7PSN6   A0A2S2QLZ4   A0A182WDM1   A0A182QGL9   A0A182PJM1   W8AW74   A0A182RAK9   W8BIU1   A0A182N280   A0A182G514   A0A182JXY2   A0A026X306   B0WLG2   J9LUZ1   E2AD21   A0A0A9YCP4   E0VSQ1   A0A2S2PX60   A0A1Q3F6F1   A0A1Q3F6E4   E9J5G5   A0A146MCR9   A0A1Y1N0Q7   A0A182X5Q7   A0A232F0T6   A0A1B6HJQ6   K7IN19   A0A1Y1N0U2   E2BZ84   A0A182FC04   A0A151IG77   A0A151IS99   A0A195FK85   A0A1B0B1R4   A0A1A9Z2X3   A0A1B0G914   A0A151WRN0   A0A1A9XYW4   A0A1A9UQQ2   A0A1W4W784   Q0IEY0   F4WRA9   Q6JJM2   A0A1S4FHG3   A0A195BBK3   A0A158NUP5   A0A084WM76   A0A1A9WRI4   W5JS09   A0A1B0DPR3   Q2M0Y0   A0A1I8Q0U0   H1ZYC5   H1ZYD2   H1ZYC9   H1ZYD3   B4GQY5   M9PD17   Q9U9B0   B4IA44   Q9VW83   Q7K0T0   A0A336MAX2   A0A0J9RYM8   A0A3B0JRC0   A0A2G8LJP3  

PDB

1SRQ     E-value=2.55782e-07,     Score=130

KEGG

101745506    K07207 tuberous sclerosis 2 | (RefSeq) tuberin

GO

GO:0033596   GO:0005634   GO:0032007   GO:0051056   GO:0005096   GO:0016021   GO:0046627   GO:0051726   GO:0051898   GO:0030178   GO:0005737   GO:0035069   GO:0007584   GO:1904504   GO:1904515   GO:2000331   GO:0046621   GO:0042632   GO:0045886   GO:1902350   GO:0007165   GO:0071456   GO:0019900   GO:0001934   GO:0008340   GO:0048477   GO:0008285   GO:0030308   GO:0045792   GO:1904262   GO:0055088   GO:0043547   GO:0042325   GO:0010508   GO:0005829   GO:0009968   GO:0019901   GO:0008484   GO:0008270   GO:0005488   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR10063  

Length:

302

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01677

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.01178

outside

1  -  302

 

 

Pi

403.436267

Theta

211.160276

Tajima's D

3.670436

CLR

0.395021

CSRT

0.997350132493375

Interpretation

Uncertain