Gene

KWMTBOMO10043  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005530

Annotation

PREDICTED:_28S_ribosomal_protein_S33?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr17(+):808800-809480      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.384

CDS

ATGGCCACAAATTATACAAAATATGCTCAACTAATTAATACGTCGACAACGTACGCGCGACGAATGAAGCGCCTGTCCAATAGGATCTTTGGCGAAGTTGCCCTACCTACCAACTCCAAGTCCATGAAGGTTGTCAAAATCTTCTCTGCTCGACCTCTGCACACAAATGAGGAAATTATACACTATTATCCTAGACACATGGAGACGCATAAACTGATGATGAATTTAAGAGATTATGGTCTATTCCGTGATGAGCATCAAGACTTCAAGGAGGAGATGAAGAGATTGCGAGAACTCCGAGGTAAAGTCAAGGTTTGGAGGCGGTTGCTTGATAAGAAGGCGGAAGCAAAAGAATAA

Protein

MATNYTKYAQLINTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLDKKAEAKE

Uniprot

Q2F5Y5   A0A2W1BFL1   A0A2A4JI59   H9J7N8   A0A0L7LRT8   A0A212FF95   + More
A0A1E1WKR0   S4PML9   A0A194QAS0   A0A0N0PDV2   U5ETH0   A0A0K8TS94   A0A1Y1KRT1   A0A2P8YFU0   A0A2M4AWS2   D6WX59   A0A067R0Z5   A0A2J7R3E6   A0A182RPE3   W5JWY4   A0A2M3ZDD6   A0A2M4AWU1   A0A182F719   A0A2M4C480   A0A182ULP0   A0A182JZ11   A0A182UGR0   A0A182XIS7   A0A182LBW9   Q7PR61   A0A182HTI9   T1DPZ6   Q9VEV5   A0A1Q3G4A9   A0A182VRU3   A0A3B0JQT7   Q295W3   B4GFL6   A0A084W348   A0A182QK22   A0A182LWT1   B4QX34   B4PQZ7   B4IBW0   B3P122   A0A182J0Z1   A0A1W4U7T6   B4KBZ6   A0A195C1U7   B0XG83   A0A023ED59   A0A182N7B7   B4LX41   A0A195AXS1   A0A182PE03   B3M2J7   A0A1I8NI56   Q0IFW2   B4NLA1   A0A195DB01   A0A1L8DMK6   A0A1I8PKG2   A0A0M4ERD4   K7IN17   J9JNG9   A0A158NLU9   A0A1L8EDI6   N6UGX2   A0A232F128   A0A1W4WRC6   A0A151X7Y8   A0A1B0CEE5   A0A195F4X4   B4JFL2   B5BV16   A0A034WWK1   A0A0C9QHW2   A0A0K8V4A6   A0A2H8TIU1   A0A0N0BJQ5   A0A0J7KYB7   E2AF96   A0A1A9WFN9   E9JBY1   A0A1B6DAT2   A0A0P6B4U6   A0A0P5Z7C1   A0A0A1X386   W8BZ50   A0A1B0G4T4   A0A1A9VD31   A0A0P5V7G9   A0A0L0BQI8   A0A1A9ZAD1   A0A0P5DZX8   A0A0P5T8U7   A0A1A9XBD3   A0A0P4WKQ5   A0A154PMU1  

Pubmed

28756777    19121390    26227816    22118469    23622113    26354079    + More
26369729    28004739    29403074    18362917    19820115    24845553    20920257    23761445    20966253    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17994087    24438588    17550304    24945155    25315136    17510324    20075255    21347285    23537049    28648823    25348373    20798317    21282665    25830018    24495485    26108605   

EMBL

DQ311287    ABD36232.2    KZ150179    PZC72535.1    NWSH01001312    PCG71747.1    + More
BABH01020426    JTDY01000229    KOB78183.1    AGBW02008849    OWR52393.1    GDQN01009938    GDQN01003472    JAT81116.1    JAT87582.1    GAIX01000106    JAA92454.1    KQ459232    KPJ02529.1    KQ460044    KPJ18295.1    GANO01002783    JAB57088.1    GDAI01000587    JAI17016.1    GEZM01077465    JAV63298.1    PYGN01000629    PSN43126.1    GGFK01011925    MBW45246.1    KQ971361    EFA08795.1    KK852784    KDR16579.1    NEVH01007821    PNF35340.1    ADMH02000081    ETN67870.1    GGFM01005803    MBW26554.1    GGFK01011945    MBW45266.1    GGFJ01010928    MBW60069.1    AAAB01008859    EAA07794.3    APCN01000536    GAMD01002894    JAA98696.1    AE014297    BT016004    KX531437    AAF55312.1    AAV36889.1    ANY27247.1    GFDL01000400    JAV34645.1    OUUW01000008    SPP84537.1    CM000070    EAL28595.1    CH479182    EDW34401.1    ATLV01019815    KE525279    KFB44642.1    AXCN02000146    AXCM01004364    CM000364    EDX12688.1    CM000160    EDW97319.1    CH480827    EDW44868.1    CH954181    EDV49141.1    CH933806    EDW15848.1    KQ978344    KYM94849.1    DS232999    EDS27301.1    GAPW01006267    GAPW01006266    JAC07332.1    CH940650    EDW66693.1    KQ976716    KYM76835.1    CH902617    EDV43450.1    CH477286    EAT44738.1    CH964272    EDW84304.1    KQ981042    KYN10095.1    GFDF01006490    JAV07594.1    CP012526    ALC47714.1    ABLF02014729    ABLF02014730    ABLF02014731    ADTU01002193    GFDG01002104    JAV16695.1    APGK01035639    KB740928    KB632064    ENN77897.1    ERL88458.1    NNAY01001310    OXU24401.1    KQ982431    KYQ56495.1    AJWK01008791    KQ981805    KYN35635.1    CH916369    EDV93493.1    AB456740    BAG70406.1    GAKP01000352    JAC58600.1    GBYB01014253    JAG84020.1    GDHF01021896    GDHF01018582    JAI30418.1    JAI33732.1    GFXV01001807    GFXV01006132    MBW13612.1    MBW17937.1    KQ435711    KOX79468.1    LBMM01002088    KMQ95284.1    GL441302    GL439067    EFN64932.1    EFN67900.1    GL771642    EFZ09651.1    GEDC01014568    JAS22730.1    GDIP01022093    JAM81622.1    GDIQ01095958    GDIP01047627    LRGB01003333    JAL55768.1    JAM56088.1    KZS03161.1    GBXI01009144    JAD05148.1    GAMC01001974    GAMC01001971    GAMC01001968    JAC04588.1    CCAG010006284    GDIP01103162    JAM00553.1    JRES01001621    KNC21479.1    GDIP01154661    JAJ68741.1    GDIQ01241618    GDIP01129410    GDIP01095262    JAK10107.1    JAL74304.1    GDRN01022700    JAI67779.1    KQ434993    KZC13201.1   

Proteomes

UP000218220    UP000005204    UP000037510    UP000007151    UP000053268    UP000053240    + More
UP000245037    UP000007266    UP000027135    UP000235965    UP000075900    UP000000673    UP000069272    UP000075903    UP000075881    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000000803    UP000075920    UP000268350    UP000001819    UP000008744    UP000030765    UP000075886    UP000075883    UP000000304    UP000002282    UP000001292    UP000008711    UP000075880    UP000192221    UP000009192    UP000078542    UP000002320    UP000075884    UP000008792    UP000078540    UP000075885    UP000007801    UP000095301    UP000008820    UP000007798    UP000078492    UP000095300    UP000092553    UP000002358    UP000007819    UP000005205    UP000019118    UP000030742    UP000215335    UP000192223    UP000075809    UP000092461    UP000078541    UP000001070    UP000053105    UP000036403    UP000000311    UP000091820    UP000076858    UP000092444    UP000078200    UP000037069    UP000092445    UP000092443    UP000076502   

PRIDE

Q2F5Y5    H9J7N8    Q9VEV5   

Pfam

PF08293   MRP-S33        + More
PF07324   DGCR6
PF09758   FPL

Interpro

IPR013219   Ribosomal_S27/S33_mit        + More
IPR010849   Gonadal       
IPR039272   CLEC16A/TT9       
IPR019155   CLEC16A/TT9_N       

ProteinModelPortal

Q2F5Y5   A0A2W1BFL1   A0A2A4JI59   H9J7N8   A0A0L7LRT8   A0A212FF95   + More
A0A1E1WKR0   S4PML9   A0A194QAS0   A0A0N0PDV2   U5ETH0   A0A0K8TS94   A0A1Y1KRT1   A0A2P8YFU0   A0A2M4AWS2   D6WX59   A0A067R0Z5   A0A2J7R3E6   A0A182RPE3   W5JWY4   A0A2M3ZDD6   A0A2M4AWU1   A0A182F719   A0A2M4C480   A0A182ULP0   A0A182JZ11   A0A182UGR0   A0A182XIS7   A0A182LBW9   Q7PR61   A0A182HTI9   T1DPZ6   Q9VEV5   A0A1Q3G4A9   A0A182VRU3   A0A3B0JQT7   Q295W3   B4GFL6   A0A084W348   A0A182QK22   A0A182LWT1   B4QX34   B4PQZ7   B4IBW0   B3P122   A0A182J0Z1   A0A1W4U7T6   B4KBZ6   A0A195C1U7   B0XG83   A0A023ED59   A0A182N7B7   B4LX41   A0A195AXS1   A0A182PE03   B3M2J7   A0A1I8NI56   Q0IFW2   B4NLA1   A0A195DB01   A0A1L8DMK6   A0A1I8PKG2   A0A0M4ERD4   K7IN17   J9JNG9   A0A158NLU9   A0A1L8EDI6   N6UGX2   A0A232F128   A0A1W4WRC6   A0A151X7Y8   A0A1B0CEE5   A0A195F4X4   B4JFL2   B5BV16   A0A034WWK1   A0A0C9QHW2   A0A0K8V4A6   A0A2H8TIU1   A0A0N0BJQ5   A0A0J7KYB7   E2AF96   A0A1A9WFN9   E9JBY1   A0A1B6DAT2   A0A0P6B4U6   A0A0P5Z7C1   A0A0A1X386   W8BZ50   A0A1B0G4T4   A0A1A9VD31   A0A0P5V7G9   A0A0L0BQI8   A0A1A9ZAD1   A0A0P5DZX8   A0A0P5T8U7   A0A1A9XBD3   A0A0P4WKQ5   A0A154PMU1  

PDB

5AJ4     E-value=3.68317e-19,     Score=226

KEGG

101736911    K17411 small subunit ribosomal protein S33 | (RefSeq) 28S ribosomal protein S33, mitochondrial

GO

GO:0005840   GO:0006412   GO:0032543   GO:0003735   GO:0005763   GO:0016021  

PANTHER

PTHR13362   PTHR13054   PTHR21481  

Length:

118

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00258

Exp number, first 60 AAs:

0.00253

Total prob of N-in:

0.71275

inside

1  -  118

 

 

Pi

447.754846

Theta

213.700249

Tajima's D

3.417434

CLR

0.320667

CSRT

0.992150392480376

Interpretation

Uncertain