SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10037
Pre Gene Modal
BGIBMGA005689
Annotation
PREDICTED:_DNA_polymerase_nu-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.442
 

Sequence

CDS
ATGCATAACGAGCGTCAGCGTGGTGTTCTCAACGTAACTCGCCGAAGTAAGCCCGTTCAAAACAAAAAAGTATTAAATTTTGATACAAACAACCAAAAAATACCTAAAGAATTACAAAACAATGACACAACTATAGGTGTTCAAAACGATTCAGATAGTAATAAATTTAGTTTTCCACAAGAAATTTCAACACGGAATATTTTGGATAGCACTCACCACAATGAACTCGAACAATCTTTAATAATAAGTATTGATTCAATTGCTGACAGTAACAATAATATTGTCAACGAGGCAGCTTATACTGATGGTCCTGTCTATGAAAATCCCAAACGGACACCTGTCAAGGATAGTTGCGTTTCTACTAAAGTAGACAATAACTCGAGGGACTGTAATAATTGGGATGCTATGTTCGATATTGATGTACTCACCACAAGTGATATGGTAATGGCACTGGATCAACAAGTGGAAGAAAGATCATTTGACTACACTGATAGAGCTGTCTGTGATTTAAAAAATTATAAAGATGAAGTTGCACTAAAGAAAACGAAATCTAAGATGAAGCTTAAAAAGAAAGAAAGAAAATCCTTATATTTACCAGAGAAAGCTAATCTCCGAAAACAAAAATATACGAAGGCAGTCAAGAATTGGCTTGAAAATGTTAGTGTTTCAGATGTAGGAATAACTGATTTAATTAACACAAGAAAATCGGTAGAGATTGCTGAAAAGCCTGATCATTTTGAAAGTGAAATTGAACACATCGATTCAAAAAAACATTCAAAGAAGAAAGTGATTCAAGCAAAACTAGCAAATAAAGACGGTATTATGAAATTTAGTAAGCCGCTAAATACAGAATTGATTGAAGATATACATAATCAAGAAGAAGCAATGGATTCTGAATTAAACAATAAAAAAATGAAATCGAAATTTGTAGCTCCGACTAAATCCCAGATACCGGTCAAAGAAATTTATTATAATCTGATTGATGTCAATGAAAACACCAATGATATTACTCAATTATCTGAAGTTAATAATCAAACAGCTACGGTCATGTTGTATTACAGGTAG
Protein
MHNERQRGVLNVTRRSKPVQNKKVLNFDTNNQKIPKELQNNDTTIGVQNDSDSNKFSFPQEISTRNILDSTHHNELEQSLIISIDSIADSNNNIVNEAAYTDGPVYENPKRTPVKDSCVSTKVDNNSRDCNNWDAMFDIDVLTTSDMVMALDQQVEERSFDYTDRAVCDLKNYKDEVALKKTKSKMKLKKKERKSLYLPEKANLRKQKYTKAVKNWLENVSVSDVGITDLINTRKSVEIAEKPDHFESEIEHIDSKKHSKKKVIQAKLANKDGIMKFSKPLNTELIEDIHNQEEAMDSELNNKKMKSKFVAPTKSQIPVKEIYYNLIDVNENTNDITQLSEVNNQTATVMLYYR

Summary

Uniprot
Pfam
PF00476   DNA_pol_A
Interpro
IPR001098   DNA-dir_DNA_pol_A_palm_dom        + More
IPR036397   RNaseH_sf       
IPR002298   DNA_polymerase_A       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
354
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04314
outside
1  -  354
 
 

Population Genetic Test Statistics

Pi
26.171824
Theta
24.926259
Tajima's D
0.259418
CLR
12.029023
CSRT
0.443927803609819
Interpretation
Uncertain
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