Gene

KWMTBOMO10024  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013693

Annotation

PREDICTED:_peptidyl-tRNA_hydrolase_ICT1?_mitochondrial-like_[Amyelois_transitella]

Location

Bomo_Chr17(+):600460-603264      View in EpiBrowser

Full name

Probable ribosome biogenesis protein      

Location in the cell

Mitochondrial   Reliability : 3.064

CDS

ATGACTTTAGCTACATTACGTTTAAACTTTATACGTGGCTTAATTAAAAATGCAACTTGTACTGCGTTACTTCAGAGGCCCTTGGGATACAAGAGCTCCATATCATTGGAAACCCTCTATCCAAATAGTTCTTTGAAGCTCACCACTCCTGCATTTAAACCTGATGGTAATGAAAAATTCTCAGGATTCATACCGATACAGAAACTGGATATATCATACAGTGCCAGCTCTGGGCCAGGAGGTCAGAACGTAAACAAGGTTCATACAAAAGTCGACTTAAGGTTTAAGTTGAGTGATGCTGACTGGATACATCCCGATATTAGACAGAGAATGCTTGAATTGTATGACAAGAAGCTGACAAAAGAAGGGTATTTGATCATAAAATCAGACTGCACTCGGTCTCAACAGCTCAACTTGGCTGATTGCATGCGGAAGCTACGCAATATGATCCGAGATGCTGAAGTCACAAAACGTGAACCTTCACCGGAAACTCAGGAAAGGATAAGGCAGAGGCAGTTAAAAGCGGCGAGACTACGCGTGGCCATCAAACGCGAAGATTCATTGAAGCGCTCCTTGAAACAACCTCCTACTGTTGTTGATTTATGA

Protein

MTLATLRLNFIRGLIKNATCTALLQRPLGYKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQERIRQRQLKAARLRVAIKREDSLKRSLKQPPTVVDL

Description

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Similarity

Belongs to the TSR3 family.

Uniprot

H9JVY0   A0A2A4JUS0   A0A2H1W815   A0A2W1BFI7   A0A194QC30   A0A3S2P017   + More
A0A0N1IG45   A0A212FF67   S4PT81   A0A034WNK3   A0A0K8U206   W8BGN0   A0A0L0C5X8   T1PJ94   D6WUY9   A0A1I8PAP4   K7IZ37   A0A0M4E6N9   A0A1A9UH76   B4JCQ4   A0A1B6H9T4   E2C4H0   A0A1A9XW10   A0A1B0AP39   A0A1B6EL90   A0A026WKF3   Q7Q4J2   E2AT64   A0A1A9ZK71   A0A151JUZ4   A0AQ18   B4MWZ5   C0MKK6   Q9VKU3   A0AQ14   A0AQ12   A0A182PAP9   B0WIP6   B4Q9C2   A0AQ20   A0A1B6LZH8   C0MKL4   A0A0J7NRP7   A0A2M3ZC96   A0A195D6Z6   A0A195DPE6   A0A195BDI7   A0A151WPH9   A0A2M4AVN3   A0A158NFH3   A0A182IW85   A0A2M4C077   A0A1B0FAU1   A0AQ22   A0A182L0F2   A0A2M4AVK9   A0A2M4AVF7   A0A1B6F006   A0A2S2NTD0   A0A182MES0   A0A2M3ZJ64   W5JD18   F4WGT0   B4HWR3   A0A310SLD0   Q16T93   A0A1S4GYX6   A0A182IC24   A0A182Y9Z0   A0A1A9WZQ2   A0A2H8TSB7   A0A182U122   A0A087ZYK5   J9JWS2   A0A1I8JUM9   A0A2A3E3J0   U5EV93   A0A067R267   A0A182K0M4   A0A2S2QNT3   B4P0Q5   B4KJ41   A0A2M4AUU9   A0A0M8ZQ87   A0A182G3N1   B3N5E3   A0A154NY58   A0A1B6E016   E9ITG2   N6TQC9   A0A1W4WV33   A0A0L7R2Z8   A0A182UN42   D1FPL5   A0A182XFU0   A0A1W4UFK9   A0A1S4ES33   A0A0V0G8J0   A0A336LAF5   B4MDJ7  

Pubmed

19121390    28756777    26354079    22118469    23622113    25348373    + More
24495485    26108605    25315136    18362917    19820115    20075255    17994087    20798317    24508170    30249741    12364791    16951084    19126864    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    21347285    20966253    20920257    23761445    21719571    17510324    25244985    24845553    17550304    26483478    21282665    23537049    20441151   

EMBL

BABH01045184    NWSH01000621    PCG75233.1    ODYU01006921    SOQ49198.1    KZ150288    + More
PZC71596.1    KQ459232    KPJ02545.1    RSAL01000075    RVE48912.1    KQ460044    KPJ18312.1    AGBW02008849    OWR52376.1    GAIX01012498    JAA80062.1    GAKP01003601    GAKP01003599    JAC55353.1    GDHF01031758    JAI20556.1    GAMC01008658    JAB97897.1    JRES01000869    KNC27651.1    KA648190    AFP62819.1    KQ971357    EFA08510.1    CP012523    ALC40046.1    CH916368    EDW04218.1    GECU01036266    JAS71440.1    GL452471    EFN77154.1    JXJN01001139    GECZ01031070    JAS38699.1    KK107167    QOIP01000010    EZA56463.1    RLU17997.1    AAAB01008964    EAA12662.4    GL442519    EFN63374.1    KQ981724    KYN37232.1    AM294756    CAL26742.1    CH963857    EDW76634.1    FM245878    FM245879    FM245880    FM245881    FM245882    FM245883    FM245887    FM245889    CAR93804.1    CAR93805.1    CAR93806.1    CAR93807.1    CAR93808.1    CAR93809.1    CAR93813.1    CAR93815.1    AE014134    AY060797    AM294748    AM294749    AM294751    AM294753    AM294754    AM294755    AM294757    AM294759    FM245884    FM245885    FM245888    AAF52967.1    AAL28345.1    AGB92888.1    CAL26734.1    CAL26735.1    CAL26737.1    CAL26739.1    CAL26740.1    CAL26741.1    CAL26743.1    CAL26745.1    CAR93810.1    CAR93811.1    CAR93814.1    AM294752    CAL26738.1    AM294750    CAL26736.1    DS231951    EDS28623.1    CM000361    CM002910    EDX04564.1    KMY89570.1    AM294758    CAL26744.1    GEBQ01010885    JAT29092.1    FM245886    CAR93812.1    LBMM01002228    KMQ95105.1    GGFM01005435    MBW26186.1    KQ976750    KYN08641.1    KQ980662    KYN14716.1    KQ976514    KYM82274.1    KQ982877    KYQ49708.1    GGFK01011504    MBW44825.1    ADTU01014493    GGFJ01009585    MBW58726.1    CCAG010023607    AM294760    CAL26746.1    GGFK01011489    MBW44810.1    GGFK01011430    MBW44751.1    GECZ01026338    JAS43431.1    GGMR01007795    MBY20414.1    AXCM01000186    GGFM01007739    MBW28490.1    ADMH02001866    ETN60790.1    GL888147    EGI66549.1    CH480818    EDW52458.1    KQ760116    OAD61934.1    CH477657    EAT37697.1    APCN01000774    GFXV01004293    MBW16098.1    ABLF02027486    KZ288400    PBC26297.1    GANO01003507    JAB56364.1    KK852980    KDR13002.1    GGMS01010223    MBY79426.1    CM000157    EDW87950.1    CH933807    EDW11403.1    GGFK01011229    MBW44550.1    KQ435912    KOX68885.1    JXUM01141868    KQ569321    KXJ68667.1    CH954177    EDV59022.1    KQ434782    KZC04553.1    GEDC01006049    JAS31249.1    GL765555    EFZ16117.1    APGK01058543    KB741291    KB631948    ENN70511.1    ERL87400.1    KQ414665    KOC65151.1    EZ419765    ACY69938.1    GECL01001861    JAP04263.1    UFQS01001425    UFQT01001425    SSX10818.1    SSX30499.1    CH940661    EDW71258.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000053240    UP000007151    + More
UP000037069    UP000095301    UP000007266    UP000095300    UP000002358    UP000092553    UP000078200    UP000001070    UP000008237    UP000092443    UP000092460    UP000053097    UP000279307    UP000007062    UP000000311    UP000092445    UP000078541    UP000007798    UP000000803    UP000075885    UP000002320    UP000000304    UP000036403    UP000078542    UP000078492    UP000078540    UP000075809    UP000005205    UP000075880    UP000092444    UP000075882    UP000075883    UP000000673    UP000007755    UP000001292    UP000008820    UP000075840    UP000076408    UP000091820    UP000075902    UP000005203    UP000007819    UP000075900    UP000242457    UP000027135    UP000075881    UP000002282    UP000009192    UP000053105    UP000069940    UP000249989    UP000008711    UP000076502    UP000019118    UP000030742    UP000192223    UP000053825    UP000075903    UP000076407    UP000192221    UP000079169    UP000008792   

PRIDE

H9JVY0    A0AQ18    C0MKK6    Q9VKU3    A0AQ14    A0AQ12    + More
A0AQ20   

Pfam

PF00472   RF-1        + More
PF04068   RLI
PF04034   Ribo_biogen_C

Interpro

IPR000352   Pep_chain_release_fac_I_II        + More
IPR007177   TDD_dom       
IPR022968   Rbsm_biogenesis       
IPR007209   RNaseL-inhib_metal-bd_dom       

ProteinModelPortal

H9JVY0   A0A2A4JUS0   A0A2H1W815   A0A2W1BFI7   A0A194QC30   A0A3S2P017   + More
A0A0N1IG45   A0A212FF67   S4PT81   A0A034WNK3   A0A0K8U206   W8BGN0   A0A0L0C5X8   T1PJ94   D6WUY9   A0A1I8PAP4   K7IZ37   A0A0M4E6N9   A0A1A9UH76   B4JCQ4   A0A1B6H9T4   E2C4H0   A0A1A9XW10   A0A1B0AP39   A0A1B6EL90   A0A026WKF3   Q7Q4J2   E2AT64   A0A1A9ZK71   A0A151JUZ4   A0AQ18   B4MWZ5   C0MKK6   Q9VKU3   A0AQ14   A0AQ12   A0A182PAP9   B0WIP6   B4Q9C2   A0AQ20   A0A1B6LZH8   C0MKL4   A0A0J7NRP7   A0A2M3ZC96   A0A195D6Z6   A0A195DPE6   A0A195BDI7   A0A151WPH9   A0A2M4AVN3   A0A158NFH3   A0A182IW85   A0A2M4C077   A0A1B0FAU1   A0AQ22   A0A182L0F2   A0A2M4AVK9   A0A2M4AVF7   A0A1B6F006   A0A2S2NTD0   A0A182MES0   A0A2M3ZJ64   W5JD18   F4WGT0   B4HWR3   A0A310SLD0   Q16T93   A0A1S4GYX6   A0A182IC24   A0A182Y9Z0   A0A1A9WZQ2   A0A2H8TSB7   A0A182U122   A0A087ZYK5   J9JWS2   A0A1I8JUM9   A0A2A3E3J0   U5EV93   A0A067R267   A0A182K0M4   A0A2S2QNT3   B4P0Q5   B4KJ41   A0A2M4AUU9   A0A0M8ZQ87   A0A182G3N1   B3N5E3   A0A154NY58   A0A1B6E016   E9ITG2   N6TQC9   A0A1W4WV33   A0A0L7R2Z8   A0A182UN42   D1FPL5   A0A182XFU0   A0A1W4UFK9   A0A1S4ES33   A0A0V0G8J0   A0A336LAF5   B4MDJ7  

PDB

6GB2     E-value=4.20722e-25,     Score=281

KEGG

101737666    K15033 peptidyl-tRNA hydrolase ICT1 [EC:3.1.1.29] | (RefSeq) peptidyl-tRNA hydrolase ICT1, mitochond

GO

GO:0003747   GO:0016787   GO:0005762   GO:0070126   GO:0016150   GO:0005739   GO:0006364   GO:0006415   GO:0008413   GO:0004553   GO:0006508   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR20426  

Length:

201

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00379

Exp number, first 60 AAs:

0.00379

Total prob of N-in:

0.04152

outside

1  -  201

 

 

Pi

306.436909

Theta

184.511893

Tajima's D

2.079283

CLR

1.932965

CSRT

0.895905204739763

Interpretation

Uncertain