SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10018
Pre Gene Modal
BGIBMGA005698
Annotation
PREDICTED:_uncharacterized_protein_LOC101740060_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.068 Mitochondrial   Reliability : 1.227
 

Sequence

CDS
ATGATCACTGTAAGCTGTTACAAGTTCCACCGAATTACGTCTCGCTTCGTTAGACTGTGGCGAAAGGTTCAAACCGTTTCAGATTACCTTACGTTTCCATTAGCTTTTCTTTGCTGCCAGGGTGTTGGAATGCCACTCTCCGAAGCTACTTCCTCTGATATTAAGGATGGAGCAATAAAACAGCTTAAATACGATGTTGCGGGTATGGAAAATCACAGAACGAAACAACATGGTCATCCAGCACTAATCGATCCTGGACGATCTTCCGGTGAGCCTCTCAATGAAGGTCACTACACCATCGACTTTGCCCCAGCACCTGGAGATAATGAGGAGACAGCCATGAGGTGTCAAGACTTTTGGGAGATGATCATAAACGAAAAGCAACTAGAAGGATTCATGGCAAACCCGGTGAATATAATGGAGTCGCTTCAAGAGGAGAACCAATCAGAGGCAGAGAGCAGTCAAGCGCCCACATTTGAAATCAATGAAGCAAACAATTTCCCGGCAATCAATGCCATTAAAACACTCAACAAGAAAGGACTCGCTGCATCCATTTTTGGGACTGGAAAAAAGAAATCAATTTTTTAA
Protein
MITVSCYKFHRITSRFVRLWRKVQTVSDYLTFPLAFLCCQGVGMPLSEATSSDIKDGAIKQLKYDVAGMENHRTKQHGHPALIDPGRSSGEPLNEGHYTIDFAPAPGDNEETAMRCQDFWEMIINEKQLEGFMANPVNIMESLQEENQSEAESSQAPTFEINEANNFPAINAIKTLNKKGLAASIFGTGKKKSIF

Summary

Pfam
PF00059   Lectin_C
Interpro
IPR001304   C-type_lectin-like        + More
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR018378   C-type_lectin_CS       
SUPFAM
SSF56436   SSF56436       
Gene 3D

Ontologies

Topology

Length:
195
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.39774
Exp number, first 60 AAs:
0.39709
Total prob of N-in:
0.19472
outside
1  -  195
 
 

Population Genetic Test Statistics

Pi
130.794166
Theta
129.796334
Tajima's D
0.71111
CLR
15.450665
CSRT
0.579371031448428
Interpretation
Uncertain
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