Silkworm Genome Informatics Database

Gene

KWMTBOMO10015

Pre Gene Modal

BGIBMGA005706

Annotation

PREDICTED:_uncharacterized_protein_LOC106136348_[Amyelois_transitella]

Location

Bomo_Chr17(-):407853-413019 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.49

CDS

ATGTCTATCAATTTGGTAATGCCACCAGACATGGCGGTGTCCATGCGGCATACGAAACTGAAGGCCGAGGAGGCGGCTCTCATTGCTGGAGAACTGACCAAGCCCTCATGGGAGTCCAGAAATGAGGGTATTCACGAGAGAGTCAGCTTTGAAGATACCATTTGGGGTTTTGATTTGGCTGGAGGGATATATTACAGAACACCGCTTAGAGTTACTTTTGTGAAGCCAGACAGCCGAGCAGAAAAGGCTGGCATCAAGCCGGGAGACAGGCTGCTCCGCATCAACGACATAGACACCTCGACCCTCACGATCCAGCAGGCGCACGATCTCATTGTCGAATCAGGAATTCACCTTAAGCTAGCTGTGACCTCGCCAGATGATTTAGAAGATGCCTACTACTACTACGAGGATCCTATTGTACGTATCATCAAGAGTTCAGTTTTTAGAGACTTGCCTCACATTCTTTTCATCTAA

Protein

MSINLVMPPDMAVSMRHTKLKAEEAALIAGELTKPSWESRNEGIHERVSFEDTIWGFDLAGGIYYRTPLRVTFVKPDSRAEKAGIKPGDRLLRINDIDTSTLTIQQAHDLIVESGIHLKLAVTSPDDLEDAYYYYEDPIVRIIKSSVFRDLPHILFI

Uniprot

H9J864 A0A2H1VQR8 A0A2A4JIG7 A0A2W1B5R3 A0A3S2LLZ9 A0A3S2P3C2 + More
A0A182N6S8 A0A182RY64

Pubmed

19121390 28756777

EMBL

BABH01039833 BABH01039834 BABH01039835 ODYU01003868 SOQ43169.1 NWSH01001444 + More
PCG71223.1 KZ150306 PZC71509.1 RSAL01000062 RVE49569.1 RSAL01000036 RVE51302.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000075884 UP000075900

PRIDE

H9J864

Pfam

PF00595   PDZ        + More
PF17820   PDZ_6
PF01423   LSM

Interpro

IPR036034   PDZ_sf        + More
IPR001478   PDZ
IPR041489   PDZ_6
IPR010920   LSM_dom_sf
IPR001163   LSM_dom_euk/arc
IPR027248   Sm_D2

SUPFAM

SSF50156 SSF50156 + More
SSF50182 SSF50182

CDD

cd01720 Sm_D2

ProteinModelPortal

H9J864 A0A2H1VQR8 A0A2A4JIG7 A0A2W1B5R3 A0A3S2LLZ9 A0A3S2P3C2 + More
A0A182N6S8 A0A182RY64

PDB

1V5L E-value=3.96697e-07, Score=124

KEGG

NA

GO

GO:0030532 GO:0008380 GO:0005515 GO:0003676 GO:0008270 GO:0004553 GO:0006508 GO:0005634 GO:0004672 GO:0030677 GO:0016155 GO:0003824

Length:

157

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00634

Exp number, first 60 AAs:

0.00263

Total prob of N-in:

0.03876

outside

1 - 157

Pi

300.213804

Theta

175.93464

Tajima's D

1.66125

CLR

0

CSRT

0.820158992050397

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics