Gene

KWMTBOMO10005

Annotation

PREDICTED:_retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Bombyx_mori]

Location

Bomo_Chr17(-):118987-120555      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.238 Extracellular   Reliability : 1.125 Mitochondrial   Reliability : 1.341

CDS

ATGGGCCCAAATATGTTTAATTTAGAAAAACTGGTAGGAAGAGAAAACTTTGCCACGTGGAAATTCAGCATGAAAGCATATTTGGAACATGAAGACTTGTGGTGTTGTGTCGAATGCCACGACGGCAAGCCGGTGGATGCTGTAAAGGATATCAAAGCGAAATCAAAGCTGATCTTACTACTGGATCCGCAAAATTATGTCCATGTTCAAGACTGTAAAACCGTCAAACAAGTGTGGGAAAATTTGCAAAAGGCATTTGATGATAATGGTTTAACAAGAAGGGTAGGTTTGCTTAAAGATTTGATCAACACCACATTAGATTCAAGTAACAGAGTTGAAGATTACGTAAGTAAAATAATGAACACAGCACACAAGTTACGTAATATTAGTTTTGATGTCAATGATGAGTGGCTTGGCACCTTGATGTTGGCTGGCTTACCAGAAGAATACAAACCCATGATTATGGGCTTAGAGAGCTCTGGCATTAAAATAAGTGCTGATTCAGTAAAATCTAAACTTATACAAGAAGTTAATACATCAAAATCAGCAGCCTTCTATACAAATTCCAGAAAACCCAGAAATAATACCTCATCGATAAAAACAAAGGGTCCGAGATGCTTTAACTGCAATAGGAATGGACATTTCGCTAAATATTGTAAACTACCAAAGAAACAAACGGCAAATAAAGGAGAAAGTACTAGTTTTGTGGCAGCTTTTTCAGCTACAGTCAGCAAAAATGTAAGTAATGAATGGTACATTGACTCTGGTGCATCCATGCATATGACAAGCAGAATTGATTGGATGTATAATGTAACTGAATCATCTGTAAAAAACATCACTGTGGCTAACAGAGAACCCTTAGCTGTGAATGGAGTTGGCTGTGTGAACATTCAGCTAAGTCAAGAAAATAAAATACAAGTTAAAAATGTTTTATTTGTACCTGGGCTGGCTACTAATCTTCTCTCAGTTGGAGCTATTGTGAAAAATGGATATAAGGTCACATTTAATGACAAAGGATGTGAAGTTGGAAATAGTAAAGGTGAAGTAATATGCTCTGCAAAGCTGAAGAATAGTTTGTATGTATTAGAGACCTGTAAGGAAGTGGCCCACTTGGTCTCAAGAAATAAGAATAGCAATAATACTTACCTGTGGCACCTGCGGATGGGTCATTTGAATATGTCTGATGTAAAGAAGCTACCTACATGCTCTGAGGGAGTGACTCTTATTCCAGATGTAAATGATGTCACTTGCACACATTGTATGGAAGGTAAGCAAGCTAGGTTACCTTTTAAAAATACTGGAACAAGAGCTACGAGACCTCTAGAATTAATCCATTCTGACTTGTGTGGTCCTATGGAGAACATTTCATTTGGAGGATTTTAA

Protein

MGPNMFNLEKLVGRENFATWKFSMKAYLEHEDLWCCVECHDGKPVDAVKDIKAKSKLILLLDPQNYVHVQDCKTVKQVWENLQKAFDDNGLTRRVGLLKDLINTTLDSSNRVEDYVSKIMNTAHKLRNISFDVNDEWLGTLMLAGLPEEYKPMIMGLESSGIKISADSVKSKLIQEVNTSKSAAFYTNSRKPRNNTSSIKTKGPRCFNCNRNGHFAKYCKLPKKQTANKGESTSFVAAFSATVSKNVSNEWYIDSGASMHMTSRIDWMYNVTESSVKNITVANREPLAVNGVGCVNIQLSQENKIQVKNVLFVPGLATNLLSVGAIVKNGYKVTFNDKGCEVGNSKGEVICSAKLKNSLYVLETCKEVAHLVSRNKNSNNTYLWHLRMGHLNMSDVKKLPTCSEGVTLIPDVNDVTCTHCMEGKQARLPFKNTGTRATRPLELIHSDLCGPMENISFGGF

Uniprot

A0A2A4JRI1   A0A2A4J959   A0A194RU38   A0A194RJV9   A0A1Y1LWI3   H9JND2   + More
A0A182GZK6   A0A0J7KCB5   A0A0J7N3H6   A0A0J7NHJ8   A0A0J7KAH3   A0A1Y1N6L8   A0A1Y1N668   A0A1Y1N932   A0A224XA26   A0A0A9ZDS9   W4VRQ4   W4VRP9   W4VRP2   A0A1B6E9D0   A0A0A9XCL0   A0A1W7R670   A0A1W7R663   A0A0A9Z683   A0A0A9XEY5   A0A212F7V4   A0A0J7N4R7   A0A1W7R657   A0A1W7R6H6   A0A1W7R6J6   A0A1W7R6K6   A0A0A9XVJ9   A0A0A9YKS3   A0A0A9WPH5   A0A0A9WRE3   A0A0N1ICY1   A0A3L8DS90   A0A0J7JZN1   A0A0A1WXQ3   A0A0N1IFR1   A0A0J7K0M9   A0A146LFV8   A0A034VP70   A0A085MVP5   A0A0V0T127   A0A1E1WHM3   A0A0V0T2I4   A0A0V1FKH2   A0A085N572   A0A0V1APS7   A0A0V1K1Y9   A0A0V1F2E6   A0A0V0T3I0   A0A0V0WQU6   A0A0V0TUP0   A0A0V0YJB3   A0A0A9WQD4   A0A0J7K5G8   K7JBY9   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R8S8   A0A2W1BXU7   A0A0V0WR33   A0A2J7R668   K7J5Z3   A0A0V0Z6Q0   A0A2H1WW51   V5GAG2   A0A0A9YFM0   A0A1Y3E9R1   A0A1Y1N3X2   E2A5G7   A0A0V0SAT7   A0A0V1LPQ0   A0A0K8U6S2   A0A0V0V098   A0A0V1NJN8   A0A0V1GS48   A0A0J7KG03   A0A0A9WJ72   A0A0A9WG89   A0A0V1FXR9   A0A0A1XLZ7   A0A251TN47  

Pubmed

26354079    28004739    19121390    26483478    25401762    22118469    + More
30249741    25830018    26823975    25348373    24929829    20075255    28756777    20798317    28538728   

EMBL

NWSH01000816    PCG74073.1    NWSH01002292    PCG68657.1    PCG68658.1    KQ459875    + More
KPJ19636.1    KQ460297    KPJ16236.1    GEZM01045162    JAV77889.1    BABH01019436    JXUM01099713    KQ564513    KXJ72145.1    LBMM01009660    KMQ87962.1    LBMM01010768    KMQ87255.1    LBMM01004924    KMQ91985.1    LBMM01010791    KMQ87231.1    GEZM01011858    GEZM01011854    JAV93389.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    GFTR01008662    JAW07764.1    GBHO01003629    JAG39975.1    GANO01000510    JAB59361.1    GANO01000659    JAB59212.1    GANO01000660    JAB59211.1    GEDC01002834    JAS34464.1    GBHO01026223    JAG17381.1    GEHC01000989    JAV46656.1    GEHC01000988    JAV46657.1    GBHO01003630    JAG39974.1    GBHO01026221    JAG17383.1    AGBW02009826    OWR49812.1    LBMM01010129    KMQ87655.1    GEHC01000991    JAV46654.1    GEHC01000990    JAV46655.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    GBHO01020706    JAG22898.1    GBHO01011901    JAG31703.1    GBHO01033237    JAG10367.1    GBHO01033235    JAG10369.1    KQ460882    KPJ11482.1    QOIP01000004    RLU23300.1    LBMM01019465    KMQ83527.1    GBXI01011094    JAD03198.1    KQ460208    KPJ16606.1    LBMM01017716    KMQ83988.1    GDHC01012180    JAQ06449.1    GAKP01015352    JAC43600.1    KL367628    KFD61291.1    JYDJ01001086    KRX32699.1    GDQN01004560    JAT86494.1    JYDJ01000877    KRX33198.1    JYDT01000069    KRY86576.1    KL367553    KFD64618.1    JYDH01000330    KRY26802.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    JYDJ01000808    KRX33413.1    JYDK01000071    KRX78123.1    JYDJ01000136    KRX42725.1    JYDU01000010    KRY00136.1    GBHO01036544    JAG07060.1    LBMM01013295    KMQ85718.1    AAZX01000798    NEVH01019375    PNF22597.1    NEVH01002725    PNF41351.1    NEVH01006721    PNF37230.1    KZ149913    PZC78057.1    KRX78146.1    NEVH01006980    PNF36330.1    JYDQ01000379    KRY07987.1    ODYU01011515    SOQ57290.1    GALX01001351    JAB67115.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    LVZM01023578    OUC39908.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    GL436933    EFN71322.1    JYDL01000021    KRX23821.1    JYDW01000017    KRZ61510.1    GDHF01030254    JAI22060.1    JYDN01000113    KRX56900.1    JYDM01000185    KRZ84108.1    JYDP01000350    KRZ01021.1    LBMM01008124    KMQ89126.1    GBHO01036148    JAG07456.1    GBHO01036147    JAG07457.1    JYDT01000024    KRY90099.1    GBXI01002679    JAD11613.1    CM007899    OTG12557.1   

Proteomes

UP000218220    UP000053240    UP000005204    UP000069940    UP000249989    UP000036403    + More
UP000007151    UP000279307    UP000055048    UP000054995    UP000054776    UP000054805    UP000054826    UP000054632    UP000054673    UP000054815    UP000002358    UP000235965    UP000054783    UP000243006    UP000000311    UP000054630    UP000054721    UP000054681    UP000054924    UP000055024    UP000215914   

PRIDE

H9JND2   

Pfam

PF07727   RVT_2        + More
PF13961   DUF4219
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF00078   RVT_1

Interpro

IPR001584   Integrase_cat-core        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR000477   RT_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A2A4JRI1   A0A2A4J959   A0A194RU38   A0A194RJV9   A0A1Y1LWI3   H9JND2   + More
A0A182GZK6   A0A0J7KCB5   A0A0J7N3H6   A0A0J7NHJ8   A0A0J7KAH3   A0A1Y1N6L8   A0A1Y1N668   A0A1Y1N932   A0A224XA26   A0A0A9ZDS9   W4VRQ4   W4VRP9   W4VRP2   A0A1B6E9D0   A0A0A9XCL0   A0A1W7R670   A0A1W7R663   A0A0A9Z683   A0A0A9XEY5   A0A212F7V4   A0A0J7N4R7   A0A1W7R657   A0A1W7R6H6   A0A1W7R6J6   A0A1W7R6K6   A0A0A9XVJ9   A0A0A9YKS3   A0A0A9WPH5   A0A0A9WRE3   A0A0N1ICY1   A0A3L8DS90   A0A0J7JZN1   A0A0A1WXQ3   A0A0N1IFR1   A0A0J7K0M9   A0A146LFV8   A0A034VP70   A0A085MVP5   A0A0V0T127   A0A1E1WHM3   A0A0V0T2I4   A0A0V1FKH2   A0A085N572   A0A0V1APS7   A0A0V1K1Y9   A0A0V1F2E6   A0A0V0T3I0   A0A0V0WQU6   A0A0V0TUP0   A0A0V0YJB3   A0A0A9WQD4   A0A0J7K5G8   K7JBY9   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R8S8   A0A2W1BXU7   A0A0V0WR33   A0A2J7R668   K7J5Z3   A0A0V0Z6Q0   A0A2H1WW51   V5GAG2   A0A0A9YFM0   A0A1Y3E9R1   A0A1Y1N3X2   E2A5G7   A0A0V0SAT7   A0A0V1LPQ0   A0A0K8U6S2   A0A0V0V098   A0A0V1NJN8   A0A0V1GS48   A0A0J7KG03   A0A0A9WJ72   A0A0A9WG89   A0A0V1FXR9   A0A0A1XLZ7   A0A251TN47  

KEGG

105841774    no KO assigned | (RefSeq) retrovirus-related Pol polyprotein from transposon TNT 1-94

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0043565   GO:0004190   GO:0006508   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR11439  

Length:

460

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15409

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00262

outside

1  -  460

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain