Silkworm Genome Informatics Database

Gene

KWMTBOMO09995

Pre Gene Modal

BGIBMGA006890

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr16(-):14286664-14290704 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.821

CDS

ATGGCAACAAATAACAACGAAGCAGTCTCCGGTATTAAACCACCCGGATACTTGCACATCGAGTCGGACAACAAGTCGGCAAATTGGAAAAAATGGCGACAACAGTTCGAATGGTATGCAACTGCAATTCAGCTAGGAAAGAAACCTGCCGATATTCAAGCTGCAACATTCATGTCAATCATAGGACCAGATGCAATTGACATCTACAACAGTTTTAATTTGAATACAATAGATGAACAAAAATTAAGCACCATTATCGGAAAGTTCGAAGAATATTTCGCGCCGAAAAACAACATATCGTTCGAAAGGTATGTTTTCTTCAAAATTGAACAACATGAAGACGAATCGTTTAACGAATTCATCACTAGAATTAAAACACAAGCAAACAAATGCGAGTTTGGCACTCTACTTGAAGAAATGCTGAAAGACAAGATTGTATTCGGAATAAAATCAACCCAAATCAGAGAAAAATTACTCACCGAAGAAAAACTTGATCTCACAAAAGCCACAGCCATCTGTAAAAGCAGTGAACAAGCCTCCAAACAACTTAACGAGTTTGAGAATAACAACAAGAGTGAAAAAATACTGACAATCAAAAGTAAGAACTTCAGAAATGAAAAATTTGACTGTAAAAGATGTGGTTCAAACCACAAGGCTAGAGAATGCCAAGCCTACAACAAATTATGTACAAAGTGTAACAAGGCCGGTCATTTTGCAAAAATGTGTCGTTCCCAAATCCAATTGAAACAAAAAAATAAAATAAATACTCTAGAAGAAAATTCTACTTCAGAAAATTCAGATGAATCATTTATAGGACAATTAAGTGTCGGCAACTCCAAAGACTGGACAGAAAGTGTCGAAACTGCCAACACCAAATTCACAGCAAAGCTTGATACTGGTGCAGAGTGCAACGTCCTTCCAAATTTCATAGTACAGAAAACTCACGCTTGTATACAACCAAGTCGCACTAAAAATTTAATAAGCTATTCAAATAACAGAATTTCAGTACTTGGAGAAGTAAAGTTACAATGCAAAATAAAAAAGAAAACTGCTAAAATACTATTTAAAGTTGTAGCTGAAAGAGTCACACCAGTCTTAGGACTAAACACTTGTGAGAAGCTGGAACTAATTGCACGAGTTGAAACATTGAAAGAAAGCTCATCCAACGATGACATATTTAAAGGGTTAGGTTGCTACAAAAATTTTGAGTATGATATTGACCTCATAGAAAACCCCAAATTTGAAATAAAACCAACAAGAAAAGTTCCACATGCCATAAGAAATGAAGTAAAACAAGAATTAGATAGAATGGTAAAACTGGATGTCATCACACCTGAAACAGAACCGACACCAGCAAAGGAAGAGCTACAGAAAACGGTCAAAGAAGTAATAGAGACATTGAAAATTTCTGGCTTCAAACTCAATCAAAGCAAATGCATCTTTGAAGCCAAAAGAATAAAATTTTTAGGTCATATAGTCTCAGCCAAAGGTTTAGAAGCAGATCCTGAAAAAGTAAAAGCCATAGAATTTATGAAAACACCACAGAACAAAAAAGAACTGCAAAGGATACTAGGAATGATAACATATGTAAATAAATACATTCCCAACATGTCAGAATTAACAAACCCTTTAAGAGACCTACTTCACAAGGACACAAGTTTCAACTGGGAATTCTATCATGATGAAGCACTCAACAAAATTAAAAAAGTCTTACAGAATCCACCAGTGCTAAAACTATATGATGTAAACAAACCAGTCACACTAAGCGTGGATGCAAGCTCAAAGAATCTTGGTGCAGCACTTCTTCAGGAAGGCCAACCAGTAGCTTATGGAGCCAGAACATTGACTAAATCCGAACAAAATTATCCTCAAATTGAAAAGGAAGCACTTGCTATACTATTTGGGTGCAAAAAGTTCCATGAGTATGTCTATGGCAAAGAGTTATTAGTCGAATCAGATCACAAGCCGCTCGAGACAATATTCAGAAAAAACATTCAGTCAGCCCCAGCTAGACTTCAACGTATAATGCTCAACCTAACACCGTATTCACCAAAAATTACATTTAAAAAAGGCACAGAAATACCACTAGCAGACTTTTTAAGTCGTGATTGTGACACTTCAAAACTGAATGACTATCAGGAAGAAGACCTAAAGATCTCAATAATATTACCAACAACATTTGACTACACAGAAGAGTTGATCAAAGCAACAAAAGAAGACCCCCACCTGCAACTCTTGTTAAAAACAATAATGAAAGGGTTCCCAGAAAAGGCTGATCAACTCCCTACAGAACTGCATCACTACTTCAATTTCAAAGAAGAACTAACATACTTCAAAGGTCTAATTTTCAAAGGTCACAAAATTGTAGTGCCCAAAACACAAATACCTCAGATGCTAAAATACATACACCAAGGTCACCTTGGAATTCAGAGTTGCTTGAAAAGAGCACACCAATTACTCTATTGGAGAGGACAATATGAAGACATCGTGAAACTGAAAGAATGGCGTTTCACGCACTCAACATCCAGTCCTCACCACCCCCAAGGCAATGGCTTAGCCGAAAGAGCTGTCCAAACTGCAAAAAACCTACTAAGGAAATGCAGTATTGATAAATCGGATATCCAACTTGCTCTATTAAATTGGAGAAATACACCAAGAACAAACAATCTAGGGTCTCCTAATCAACGCCTCTACAGTAGAATAACACGATCACTAATACCTACAAGTGAAAATAATCTTAAACCAAAGATAGTTCAAGGGGTCACATCTGAACTAAAGTACCTACGAAACAAACAAGCCAACCATAGCAACAAGCAACGTAAGGAGCCAACCAATTATGAACTCGACGACAGAATCAGACACAAAGTCGGTCATCGTCAATGGGAAGGAGCGAGAGTGATAGAGAAACCTAATGATCACCCGAGATCCATTATCATTAAAACCGACAAAGGACAAATATTCAGAAGAAACATTGGACACATACACAATACACTATCAGACCTATCAATTGGCAGCAAAGAAGCGGTTCCGGAAACAGTATATCCTGACGACTTACCACATGCCCAATCGGACAAACAACCGGAGCTACCTGCAGCAGCTACTACATCTCAAGAACAAACAACTACATCACCAAGGATTAATTGCAAAAGCAGCGCTTCAGAAGCACCCGTCATAACTAGCAGTGATCAACCGACTACAAGATGTTCAAGATTCGGAAGAACCATCAAACCAGTCGACAGACTAGATCTATAG

Protein

MATNNNEAVSGIKPPGYLHIESDNKSANWKKWRQQFEWYATAIQLGKKPADIQAATFMSIIGPDAIDIYNSFNLNTIDEQKLSTIIGKFEEYFAPKNNISFERYVFFKIEQHEDESFNEFITRIKTQANKCEFGTLLEEMLKDKIVFGIKSTQIREKLLTEEKLDLTKATAICKSSEQASKQLNEFENNNKSEKILTIKSKNFRNEKFDCKRCGSNHKARECQAYNKLCTKCNKAGHFAKMCRSQIQLKQKNKINTLEENSTSENSDESFIGQLSVGNSKDWTESVETANTKFTAKLDTGAECNVLPNFIVQKTHACIQPSRTKNLISYSNNRISVLGEVKLQCKIKKKTAKILFKVVAERVTPVLGLNTCEKLELIARVETLKESSSNDDIFKGLGCYKNFEYDIDLIENPKFEIKPTRKVPHAIRNEVKQELDRMVKLDVITPETEPTPAKEELQKTVKEVIETLKISGFKLNQSKCIFEAKRIKFLGHIVSAKGLEADPEKVKAIEFMKTPQNKKELQRILGMITYVNKYIPNMSELTNPLRDLLHKDTSFNWEFYHDEALNKIKKVLQNPPVLKLYDVNKPVTLSVDASSKNLGAALLQEGQPVAYGARTLTKSEQNYPQIEKEALAILFGCKKFHEYVYGKELLVESDHKPLETIFRKNIQSAPARLQRIMLNLTPYSPKITFKKGTEIPLADFLSRDCDTSKLNDYQEEDLKISIILPTTFDYTEELIKATKEDPHLQLLLKTIMKGFPEKADQLPTELHHYFNFKEELTYFKGLIFKGHKIVVPKTQIPQMLKYIHQGHLGIQSCLKRAHQLLYWRGQYEDIVKLKEWRFTHSTSSPHHPQGNGLAERAVQTAKNLLRKCSIDKSDIQLALLNWRNTPRTNNLGSPNQRLYSRITRSLIPTSENNLKPKIVQGVTSELKYLRNKQANHSNKQRKEPTNYELDDRIRHKVGHRQWEGARVIEKPNDHPRSIIIKTDKGQIFRRNIGHIHNTLSDLSIGSKEAVPETVYPDDLPHAQSDKQPELPAAATTSQEQTTTSPRINCKSSASEAPVITSSDQPTTRCSRFGRTIKPVDRLDL

Uniprot

J9LNB8 A0A433U1D1

EMBL

ABLF02008456 RQTK01000105 RUS87639.1

Proteomes

UP000007819 UP000271974

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00665   rve

Interpro

IPR041577   RT_RNaseH_2        + More
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2

SUPFAM

SSF50630 SSF50630 + More
SSF53098 SSF53098

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

J9LNB8 A0A433U1D1

PDB

4OL8 E-value=8.36274e-24, Score=278

KEGG

105841571 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0003676 GO:0015074 GO:0008270 GO:0004190 GO:0006508 GO:0005634 GO:0004672 GO:0030677 GO:0016155 GO:0003824

Length:

1083

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00326

Exp number, first 60 AAs:

0.00165

Total prob of N-in:

0.00017

outside

1 - 1083

Pi

286.982136

Theta

169.676646

Tajima's D

2.798429

CLR

0.881894

CSRT

0.966851657417129

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree