Gene

KWMTBOMO09992

Pre Gene Modal

BGIBMGA013207

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC103942885?_partial_[Pyrus_x_bretschneideri]

Location

Bomo_Chr16(-):14234928-14236974      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.319 Mitochondrial   Reliability : 1.689

CDS

ATGAGTAACAAGCCTCCGTTAAAACTGCAAAACGTTGATTTAGACTTCTTTACCGCAGAAACCCGGTCCAAATTAAATTCAATACTGGAAGCCTTCTGCTCCGTTTACCAGGCGGAGATGCAGGCTATTCTGAAAGCAACAGAAGTGATAGAGAGGCTTAAAGTAACAAAGGCAAACATCTTGAGCGACTCTAAATCATCTTTGGAAACATTGAAAGACCTCACCTCTCTCCACCCTGTCGCTTTCAGAATCAGAGCTAACATAGTGCGACTTGGGGCCGTCGGTGTGGACATCAAACTATTCTGGCCGAGGGCTCACGTAGGCAGCACTGCTGGCAACGAACGTGCGGATGAACCGGCGAAGACCGCTGCCCTGCACAGGAAAACTAAAGCTGTTTACAACTACTTTCCGCGCTCGTATGCTAGGAGGGTCATCAGGGAGGAAACGGTAACAAAATGGAATAAAGAATATAAACAGCTGACAAACAACAAGTCTATACAAACTTTCCTCCCTGATGTCCCTCTTGCATACATTTACGCAACAAACAATACACCTAACGGCATAGTAACACAAGTTTTAACGGGGCACGGAGGCTTTGGCCAATACTTACACCGCTTCAAGCTGCGTGAGAACCCGTGGTGCCCGTGTAAGCCTGGGGTAGTGGAAGACGTCCTGCATGTACTCCTGGAGTGCCCCAGATTCGGCGCTGCCCGGCAGCAGTTCGAGGCTGCAATCAACGACTCTCTGACGAGGGATCTGTTACACACTATTCTATAA

Protein

MSNKPPLKLQNVDLDFFTAETRSKLNSILEAFCSVYQAEMQAILKATEVIERLKVTKANILSDSKSSLETLKDLTSLHPVAFRIRANIVRLGAVGVDIKLFWPRAHVGSTAGNERADEPAKTAALHRKTKAVYNYFPRSYARRVIREETVTKWNKEYKQLTNNKSIQTFLPDVPLAYIYATNNTPNGIVTQVLTGHGGFGQYLHRFKLRENPWCPCKPGVVEDVLHVLLECPRFGAARQQFEAAINDSLTRDLLHTIL

Uniprot

H9JUJ4   A0A0L7KXZ2   A0A3S2TN34   A0A2W1BN41   A0A2A4JF48   A0A0L7L848   + More
A0A0L7L1P2   Q9BLI5   Q3V5Y4   Q93139   A0A0L7LNK8   A0A437ART2   A0A0L7KPW9   A0A0K1IK14   A0A1W7R9Y4   A0A224XIA5   A0A437B2S6   A0A224X5M4   A0A0K1IK29   A0A437BVV1   A0A437BMS3   A0A224XI23   A0A2P8XKK4   A0A2L2YM05   A0A3S3P0A9   A0A087UJU4   A0A1W5CXT2   A0A0K8SHC4   A0A146MAU1   A0A0K8SHX4   A0A2P8YWT2   A0A3S2NBZ7   A0A087TCH8   O44317   A0A087TAD8   A0A224XJE3   A0A2E0U2U9   A0A087UUI6   A0A1V6PEQ8   A0A1V6PM44   B6H850   A0A1W4XBW8   A0A1W5CTD5   A0A0P4VS73   A0A1V6R2Q9   A0A2I4BSC2   A0A146QDM4   A0A1F5L1P6   A0A0A9VR33   A0A0U5GJ33   A0A146FYX2   A0A0K8SIU5   A0A438N3K9   A0A1F5L115   A0A0G4PXY0   A0A023EQ91   A0A131XRY9   A2QZW2   A0A146Q6P0   B6H8V5   A0A1W7R680   A0A146F6F4   A0A401L7X7   A0A401KR46   A0A1V6X7V7   A0A1F5L034   A0A147AN35   A0A254TW00   A0A1M3SYS3   A0A087T9L0   A0A293LVN9   G7Y200   F2S8R1   A0A1V6WQ47   A0A2P8Z0H0   A0A1V6X0H4   A0A1V6WRZ6   A0A1V6S8Z2   A0A1V6VN22   A0A087USZ4   A6R6U2   A0A1E3B1U8   A0A3Q0JKT9   A0A1B0GK10  

Pubmed

19121390    26227816    28756777    11319268    7623845    15247245    + More
29403074    26561354    26823975    29337314    28368369    18820685    27129103    27739446    25401762    27651094    24407037    24945155    17259976    30319579    28196534    22045919    22951933    19717792    27267057   

EMBL

BABH01022533    JTDY01004660    KOB67904.1    RSAL01000046    RVE50582.1    KZ149985    + More
PZC75691.1    NWSH01001820    PCG70022.1    JTDY01002407    KOB71471.1    JTDY01003675    KOB69169.1    AB046668    BAB21511.1    AB211537    BAE44464.1    D38414    BAA07467.1    JTDY01000474    KOB77015.1    RSAL01001990    RVE40611.1    JTDY01007234    KOB65358.1    KP771712    AKU04650.1    GFAH01000444    JAV47945.1    GFTR01004219    JAW12207.1    RSAL01000192    RVE44624.1    GFTR01008639    JAW07787.1    KP771711    AKU04648.1    RSAL01000004    RVE54544.1    RSAL01000031    RVE51585.1    GFTR01004280    JAW12146.1    PYGN01001848    PSN32539.1    IAAA01038678    LAA08500.1    NCKU01007943    RWS02258.1    KK120149    KFM77633.1    FWEW01000736    SLM35555.1    GBRD01013108    JAG52718.1    GDHC01002702    JAQ15927.1    GBRD01013107    JAG52719.1    PYGN01000313    PSN48706.1    RSAL01000249    RVE43511.1    KK114580    KFM62817.1    AF015813    AAB94039.1    KK114278    KFM62077.1    GFTR01003820    JAW12606.1    PABS01000003    MAT33547.1    KK121687    KFM81025.1    MDYN01000160    OQD75006.1    MDYN01000090    OQD78085.1    AM920431    CAP93579.1    FWEW01000197    SLM33995.1    GDKW01003718    JAI52877.1    MDYP01000108    OQD95557.1    GCES01132138    JAQ54184.1    LXJU01000061    OGE47125.1    GBHO01044712    JAF98891.1    CDMC01000034    CEL11878.1    BCWF01000030    GAT29901.1    GBRD01013106    JAG52720.1    NAJM01000024    RVX70312.1    LXJU01000093    OGE46892.1    HG793200    CRL30999.1    GAPW01002368    JAC11230.1    GEFM01006389    JAP69407.1    AM270275    CAK41174.1    GCES01134373    JAQ51949.1    CAP93597.1    GEHC01000979    JAV46666.1    BCWF01000012    GAT21874.1    BDHI01000029    GCB27624.1    BDHI01000008    GCB21760.1    MOOB01000212    MOOB01000209    MOOB01000109    MOOB01000066    MOOB01000048    OQE65361.1    OQE65447.1    OQE71176.1    OQE76607.1    OQE80121.1    LXJU01000208    OGE46524.1    GCES01006353    JAR79970.1    OGUI01000013    SPB50616.1    KV878279    OJZ79659.1    KK114163    KFM61799.1    GFWV01007108    MAA31838.1    DF126536    GAA93209.1    GG698529    EGD99960.1    MOOB01000219    OQE64972.1    PYGN01000254    PSN49993.1    MOOB01000149    OQE68657.1    MOOB01000203    OQE65656.1    MLQL01000095    OQE10083.1    MOOB01000493    OQE52042.1    KK121445    KFM80483.1    CH476659    EDN08851.1    JXNT01000020    ODM14912.1    AJWK01022496    AJWK01022497   

Proteomes

UP000005204    UP000037510    UP000283053    UP000218220    UP000245037    UP000285301    + More
UP000054359    UP000192927    UP000191672    UP000000724    UP000192223    UP000191518    UP000192220    UP000177622    UP000054771    UP000075230    UP000288859    UP000053732    UP000006706    UP000286921    UP000191691    UP000236662    UP000184063    UP000006812    UP000009172    UP000191342    UP000009297    UP000094569    UP000079169    UP000092461   

PRIDE

H9JUJ4    Q9BLI5    Q3V5Y4    Q93139   

Pfam

PF00075   RNase_H        + More
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF02037   SAP
PF04516   CP2
PF00931   NB-ARC
PF17107   SesA

Interpro

IPR002156   RNaseH_domain        + More
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR038902   INTS1       
IPR040167   TF_CP2-like       
IPR007604   CP2       
IPR016035   Acyl_Trfase/lysoPLipase       
IPR011990   TPR-like_helical_dom_sf       
IPR002151   Kinesin_light       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR002182   NB-ARC       
IPR027417   P-loop_NTPase       
IPR031352   SesA       
IPR001878   Znf_CCHC       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       
SSF68906   SSF68906       
SSF52151   SSF52151       
SSF48452   SSF48452       
SSF52540   SSF52540       

Gene 3D

3.30.420.10     3.60.10.10     1.10.720.30     1.25.40.10    

ProteinModelPortal

H9JUJ4   A0A0L7KXZ2   A0A3S2TN34   A0A2W1BN41   A0A2A4JF48   A0A0L7L848   + More
A0A0L7L1P2   Q9BLI5   Q3V5Y4   Q93139   A0A0L7LNK8   A0A437ART2   A0A0L7KPW9   A0A0K1IK14   A0A1W7R9Y4   A0A224XIA5   A0A437B2S6   A0A224X5M4   A0A0K1IK29   A0A437BVV1   A0A437BMS3   A0A224XI23   A0A2P8XKK4   A0A2L2YM05   A0A3S3P0A9   A0A087UJU4   A0A1W5CXT2   A0A0K8SHC4   A0A146MAU1   A0A0K8SHX4   A0A2P8YWT2   A0A3S2NBZ7   A0A087TCH8   O44317   A0A087TAD8   A0A224XJE3   A0A2E0U2U9   A0A087UUI6   A0A1V6PEQ8   A0A1V6PM44   B6H850   A0A1W4XBW8   A0A1W5CTD5   A0A0P4VS73   A0A1V6R2Q9   A0A2I4BSC2   A0A146QDM4   A0A1F5L1P6   A0A0A9VR33   A0A0U5GJ33   A0A146FYX2   A0A0K8SIU5   A0A438N3K9   A0A1F5L115   A0A0G4PXY0   A0A023EQ91   A0A131XRY9   A2QZW2   A0A146Q6P0   B6H8V5   A0A1W7R680   A0A146F6F4   A0A401L7X7   A0A401KR46   A0A1V6X7V7   A0A1F5L034   A0A147AN35   A0A254TW00   A0A1M3SYS3   A0A087T9L0   A0A293LVN9   G7Y200   F2S8R1   A0A1V6WQ47   A0A2P8Z0H0   A0A1V6X0H4   A0A1V6WRZ6   A0A1V6S8Z2   A0A1V6VN22   A0A087USZ4   A6R6U2   A0A1E3B1U8   A0A3Q0JKT9   A0A1B0GK10  

KEGG

105842742    no KO assigned | (RefSeq) uncharacterized LOC105842742

GO

GO:0004523   GO:0003676   GO:0016021   GO:0003964   GO:0003700   GO:0006357   GO:0043531   GO:0003777   GO:0005871   GO:0008270   GO:0016491   GO:0006511   GO:0008233   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR21224   PTHR11037  

Length:

258

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01512

Exp number, first 60 AAs:

0.0006

Total prob of N-in:

0.02388

outside

1  -  258

 

 

Pi

185.6111

Theta

174.184116

Tajima's D

0.251312

CLR

0.164603

CSRT

0.43902804859757

Interpretation

Uncertain