Silkworm Genome Informatics Database

Gene

KWMTBOMO09990

Annotation

Uncharacterized_protein_OBRU01_23417?_partial_[Operophtera_brumata]

Location

Bomo_Chr16(-):14185553-14189741 View in EpiBrowser

Full name

Nucleoprotein

Alternative Name

Nucleocapsid protein

Location in the cell

Mitochondrial Reliability : 1.543

CDS

ATGGAGGTTGATACACAGGCAGGTCCTTCTAGGAAAAGAACTGTTGACGCTGATAACACGGACAATGAGATTTGCGATCCTAAAAGACCTCGAATTAACATTAACAATGTGATAAAGGATAAGGTACTAAGATACATAGTAGGCAGCTCCCTCGTCCTATATAGCAAACTAAACCTATGCAAGATGACTGCAAACATAACCATTGCTCATCAAATAATGAGTATTATTGAAGGAGGCCATAACATAATGCGTAAGATGGCCAATTTCAAGATGGCTACTCATCCAAACCTAACATTAACAGCTACTGTAACCTCCAACGGCAATAATCACAACATTACTTATCGAGAAGTTGTCAACTTGATGCGGGAAAATGCCACATCAATGGGGTTAGAATACACACAGTCCAATCGCACTGACAACAACCATTGGTATGGGATTGCTAACCCCTTGTTTAACATCTTGTCTGCATTTAAAATGCGTTACGATGAGATACGAGTGGGAGTTTCAAGGATCCCCGTTGGGAAAAGGGGTAATGTAACCGACTATGTTGATGTGTCACAGTATGGATTGACGCCGGCTCATCATGTACTGCTTGAGGGGTCCACATACAAACCAGAGCGTAGATCAGCCATGGCTCAAAGTTTGGGCCCACTAACAGCAGTTATAGCTGCTTACAAATCCAGGGATCCTTATCGTTCAAAATGGATTGAAGCAGTGAAGCGTGATCTAATTCATATTCCTAACGCTGTTAATCTTTGTACTGCAATGCAGGGAAAGAGGGCAGAGGAAATAGCACCTGCTCTGAGCGCTTTTGCAGATGTAATTTTGATTGCGGGCTCACGGAATGCGCAGAGAGCTTTCTTTCCACTCAATTTCATCATATATGCACTTGCTTCTGCTGATCAATTAAGGGAGTGCGGGGCAACGAGAGAAACAGGTCCAATGGCAACCTCAGAGATAGATTTCTCTGGGAAAGGAATGTGGCTGTTGTACGCCAGGTGCTCTGGGGTAAGGTGGTCCATAGAGACTGCCATGGATGATGTTTCTGTGTCACAAGTGGTCTATCACGCAATTTCTGGAACCCAGAACGAAGATTTGGGTATTCTACAATCTATCACCGATATGAAGACTCCCTGGAAGTTAAGATCCGAATTATCCGACAAATTTAGAAGTGAGGTGAAAGTTTGA

Protein

MEVDTQAGPSRKRTVDADNTDNEICDPKRPRININNVIKDKVLRYIVGSSLVLYSKLNLCKMTANITIAHQIMSIIEGGHNIMRKMANFKMATHPNLTLTATVTSNGNNHNITYREVVNLMRENATSMGLEYTQSNRTDNNHWYGIANPLFNILSAFKMRYDEIRVGVSRIPVGKRGNVTDYVDVSQYGLTPAHHVLLEGSTYKPERRSAMAQSLGPLTAVIAAYKSRDPYRSKWIEAVKRDLIHIPNAVNLCTAMQGKRAEEIAPALSAFADVILIAGSRNAQRAFFPLNFIIYALASADQLRECGATRETGPMATSEIDFSGKGMWLLYARCSGVRWSIETAMDDVSVSQVVYHAISGTQNEDLGILQSITDMKTPWKLRSELSDKFRSEVKV

Description

Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication.

Keywords

Capsid protein Helical capsid protein Ribonucleoprotein RNA-binding Viral nucleoprotein Virion

Feature

chain Nucleoprotein

Uniprot

H9JUJ8 A0A3G1PW23 A0A1Y1K087 A0A3G3BTH0 A0A3G1PW31 A0A1Y1LNL2 + More
A0A1L3KKK4 A0A1Z2RTA4 A0A343FNE4 G9HXM2 A0A3S5GP38 A0A1L3KKM4 A0A3S3PGI8 A0A1L3KKF9 A0A1L3KKL9 A0A0A1E9N5 A0A1S6PCZ6 A0A1L3KKK7 A0A182NX97 A0A1J1ICN5

Pubmed

19121390 30324905 28004739 27880757 28637756 19726499 + More
25392223

EMBL

BABH01022546 BABH01022547 MG972986 AVR52565.1 GEZM01098390 JAV53898.1 + More
MK026599 AYP67576.1 MG972991 AVR52570.1 GEZM01050999 JAV75213.1 KX883861 APG77883.1 MF176328 ASA47423.1 KX670393 ASR92127.1 JN412853 MG770334 AXL67890.1 KX883881 APG77903.1 NCKU01011111 RWS00554.1 KX883878 APG77900.1 KX883857 APG77879.1 KM114307 AIY25032.1 KX898494 AQU42767.1 KX883848 APG77869.1 CVRI01000047 CRK98047.1

Proteomes

UP000005204 UP000285301 UP000181615 UP000075884 UP000183832

PRIDE

H9JUJ8

ProteinModelPortal

H9JUJ8 A0A3G1PW23 A0A1Y1K087 A0A3G3BTH0 A0A3G1PW31 A0A1Y1LNL2 + More
A0A1L3KKK4 A0A1Z2RTA4 A0A343FNE4 G9HXM2 A0A3S5GP38 A0A1L3KKM4 A0A3S3PGI8 A0A1L3KKF9 A0A1L3KKL9 A0A0A1E9N5 A0A1S6PCZ6 A0A1L3KKK7 A0A182NX97 A0A1J1ICN5

KEGG

NA

GO

GO:0019013 GO:0019029 GO:0003723

Subcellular location

Virion

Length:

395

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18757

Exp number, first 60 AAs:

0.06821

Total prob of N-in:

0.01228

outside

1 - 395

Pi

356.968616

Theta

205.572809

Tajima's D

2.216631

CLR

0.066616

CSRT

0.911604419779011

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics