Gene

KWMTBOMO09982

Pre Gene Modal

BGIBMGA013202

Annotation

PREDICTED:_BRCA1-associated_protein_[Bombyx_mori]

Location

Bomo_Chr16(+):14085622-14102297      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.64 Nuclear   Reliability : 2.194

CDS

ATGGCCGTCTCTTTGTGTGTACTACGTATTGAAATAGACGAAGAACTGTCCGAAATGGCAGACGGTGTTAACAATGAGGCCTCTAAGGACCAGAAAAGAAAGGACCGAGGAGCAAGGGAATCCAAAACCATAACAGTTGAAACATATGCTAGTGTTCTTAGTGGACCCAACACTGACCCAGGCATACTACCTACAAGTTCCCGCCGCTCACCTCCAGAGTCCAGCAGTATATCTGAAGACGATAACACTATTAGTTTTTTCTGTGGAAATCCACTAGTTGAAATTACTAAGGGCATATTACACTTGTACAAGGAAAATGAAATGAAAGAAGCAGAAGAAGCCAAGACACTTTGCCTACTCGCAGTTCCTGGTGCTTTAGGTGCACCCGACCTGCTTGCATTTGCTGCAGCTTGTCAACAGGATATTGCACATGTGAGGGTTCTCAGAGATGGTTCACCTGATCATTACATGGCACTATTAACATTTCGCACTAGTCAAGCAGCTCGAGAATTCCATGGGGCTTTTGATGGGGTTCCATATAGTAGTTTGGAACCAAATGCACTGTGTCATACAGCCTGGGTGTCAAGGGTTGAATGGGCAAAGGATGGTTCCCCACCACCATCACACACTGAGCTCCCTACTTGTCCTGTTTGTTTGGAGCGCATGGACGAGAGCGTGGCGGGCGTGCTGAGCGTGCAGTGCGCGCACGCCTTCCACGCGGAGTGTCTGGCGCGCAGCCGCGACCTGCGCTGCCCCGTGTGCCGCTGCGCGCAGACCCCCGAGCCGAGGGCGAGCGCACGCTGCCAGCTCTGCGACGCGCCCCACCGAGACGAGGAAGGCGACGACACCCGCGAGAACCTCAGCGGAGTCGCCGAGGGGCTCGTGGACGGGCTGGAGGAGGGCACGCTCTGGATATGCCTCATCTGTGGACACGTGGGATGTGGGAGGTACGAAGGGGGCCACGCCGCGAAGCACTTCCTGCAGTCCAACCACACGTACGCGCTGCAGCTCGGCTCCAACAGGGTCTGGGACTACGCAGGAGACAACTTCGTACACCGACTGGTGCAGAACAAGTCTGACGGCAAGCTGGTGGCGTCCGAGGGCGCCTGCGGGGGCAAGCACGACCACGAGTTCACCTACATACTCACCGAGCAACTGGACACGCAGCGCACTCACTACGAGGAGAAAATCGCCAAGCTGGAGGGGGAGCGGGCGGGGCTGGAGGGGGAGCGGGAGGCGGAGCGGGCGGCGCTGCAGGGGCGGGCGCGCGCCGCCGAGGCCCGGGCCGCTGACCTCGCCGCGCAGGTCGACGACCTCACGGCCCGCAACAAACAACTCGACCGGAAACTGCAGCAGCTCACCAACAAATTATCGGTTCTCCAAAACGAGTTGACGGAAGAGAGGGGCTTGGCGGCGGCCATGGCCAGCAGCCAGTCGGAGTGGCAGGCCAGGGCTAAAGAAAAGGAGGAGAATTTCACCAAAGAGGTCAGCGATCTGAAGGAGCAACTCCGCGACGTGATGTTCTTTGTGGAGGCGCGAGCGCAGCTGGAGCGAAGACTATGTACTTGA

Protein

MAVSLCVLRIEIDEELSEMADGVNNEASKDQKRKDRGARESKTITVETYASVLSGPNTDPGILPTSSRRSPPESSSISEDDNTISFFCGNPLVEITKGILHLYKENEMKEAEEAKTLCLLAVPGALGAPDLLAFAAACQQDIAHVRVLRDGSPDHYMALLTFRTSQAAREFHGAFDGVPYSSLEPNALCHTAWVSRVEWAKDGSPPPSHTELPTCPVCLERMDESVAGVLSVQCAHAFHAECLARSRDLRCPVCRCAQTPEPRASARCQLCDAPHRDEEGDDTRENLSGVAEGLVDGLEEGTLWICLICGHVGCGRYEGGHAAKHFLQSNHTYALQLGSNRVWDYAGDNFVHRLVQNKSDGKLVASEGACGGKHDHEFTYILTEQLDTQRTHYEEKIAKLEGERAGLEGEREAERAALQGRARAAEARAADLAAQVDDLTARNKQLDRKLQQLTNKLSVLQNELTEERGLAAAMASSQSEWQARAKEKEENFTKEVSDLKEQLRDVMFFVEARAQLERRLCT

Uniprot

A0A2A4JH71   A0A437BLM8   A0A194PRP4   S4PXK4   A0A1E1W540   A0A1E1WCY9   + More
A0A0N1PHU3   D2A5C1   A0A1Y1LUA4   U5ESP9   A0A1L8DTH2   A0A1B0CVF8   Q177G7   A0A182G3F9   A0A1J1HS73   A0A084VJA9   B4LZK5   A0A0Q9WR96   A0A1Q3FBJ2   B0W941   A0A182IZD4   B4KD18   A0A0M4EW95   A0A151JZW2   A0A1B6H9S7   B3P363   A0A336LY22   A0A2M3Z681   W5JHW4   A0A067RBB1   A0A195AZ85   A0A2M3Z5C3   E2A8Y9   A0A0J7KNL5   F4W4B5   B4PMS7   A0A158NMI5   A0A182FRB0   A0A2M4BHH2   A0A2M4AG93   A0A1I8NZ06   A0A2M4AGB4   B4JUX3   B4NIT3   A0A182PNE0   A0A151XH94   A0A3B0JNT2   A0A026WFF1   A0A3L8DJK2   A0A182MAH7   N6U3R6   E2BA11   A0A3B0JNH6   A0A182Q5G0   Q9VDZ1   A0A0B4KHR2   A0A182Y466   A0A1B6L8D8   B3M2F3   B4IHX9   A0A1W4UN00   A0A182W023   Q293Q0   B4GLT1   A0A151IY98   A0A2J7PX41   A0A1B6F5P3   A0A182XGJ1   A0A182HZT5   A0A182VFT5   A0A182LQW2   F5HMZ5   A0A0L0BQZ1   A0A182UBF9   A0A1A9Y6P5   A0A1B0BNK6   A0A2J7PX57   Q7PYV7   A0A088ATA2   A0A310S763   A0A2A3EI35   A0A182RNV7   A0A195CX58   A0A1B0G7Z4   A0A154NWZ6   A0A1A9VB81   T1PGB2   A0A1I8N9H3   A0A0M9AB45   A0A182N682   A0A182JUI4   A0A232F1X9   K7IYZ0   A0A0K8UZ32   A0A034W5L1   E9IXK5   A0A0A1X4T7  

Pubmed

26354079    23622113    18362917    19820115    28004739    17510324    + More
26483478    24438588    17994087    18057021    20920257    23761445    24845553    20798317    21719571    17550304    21347285    24508170    30249741    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    15632085    20966253    12364791    14747013    17210077    26108605    25315136    28648823    20075255    25348373    21282665    25830018   

EMBL

NWSH01001412    PCG71321.1    RSAL01000036    RVE51241.1    KQ459595    KPI95982.1    + More
GAIX01004883    JAA87677.1    GDQN01008957    JAT82097.1    GDQN01006192    JAT84862.1    KQ460643    KPJ13314.1    KQ971345    EFA05346.2    GEZM01046441    JAV77232.1    GANO01003164    JAB56707.1    GFDF01004373    JAV09711.1    AJWK01030488    CH477376    EAT42310.1    JXUM01040801    KQ561259    KXJ79188.1    CVRI01000020    CRK90903.1    ATLV01013500    KE524866    KFB38053.1    CH940650    EDW67144.2    KRF83132.1    KRF83131.1    GFDL01010104    JAV24941.1    DS231862    EDS39738.1    CH933806    EDW13788.1    CP012526    ALC47767.1    KQ981360    KYN42443.1    GECU01036312    JAS71394.1    CH954181    EDV48515.1    UFQT01000197    SSX21573.1    GGFM01003270    MBW24021.1    ADMH02001204    ETN63711.1    KK852619    KDR20118.1    KQ976697    KYM77516.1    GGFM01002962    MBW23713.1    GL437703    EFN70088.1    LBMM01005070    KMQ91841.1    GL887503    EGI70959.1    CM000160    EDW95997.2    ADTU01020596    ADTU01020597    GGFJ01003369    MBW52510.1    GGFK01006489    MBW39810.1    GGFK01006503    MBW39824.1    CH916374    EDV91293.1    CH964272    EDW83797.1    KQ982149    KYQ59580.1    OUUW01000008    SPP83785.1    KK107238    EZA54648.1    QOIP01000007    RLU20614.1    AXCM01000193    APGK01050705    KB741175    ENN73217.1    GL446638    EFN87466.1    SPP83784.1    AXCN02000271    AE014297    AY047557    AAF55646.2    AAK77289.1    AGB96104.1    GEBQ01020183    JAT19794.1    CH902617    EDV43406.2    CH480840    EDW49496.1    CM000070    EAL29164.2    CH479185    EDW38505.1    KQ980790    KYN13154.1    NEVH01020862    PNF20905.1    GECZ01024576    JAS45193.1    APCN01002010    AAAB01008987    EGK97376.1    JRES01001498    KNC22452.1    JXJN01017426    PNF20904.1    EAA00940.4    KQ766607    OAD53617.1    KZ288253    PBC30932.1    KQ977231    KYN04744.1    CCAG010010583    KQ434777    KZC04189.1    KA647847    AFP62476.1    KQ435694    KOX80917.1    NNAY01001189    OXU24806.1    GDHF01020463    JAI31851.1    GAKP01009375    JAC49577.1    GL766755    EFZ14699.1    GBXI01007988    JAD06304.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007266    UP000092461    + More
UP000008820    UP000069940    UP000249989    UP000183832    UP000030765    UP000008792    UP000002320    UP000075880    UP000009192    UP000092553    UP000078541    UP000008711    UP000000673    UP000027135    UP000078540    UP000000311    UP000036403    UP000007755    UP000002282    UP000005205    UP000069272    UP000095300    UP000001070    UP000007798    UP000075885    UP000075809    UP000268350    UP000053097    UP000279307    UP000075883    UP000019118    UP000008237    UP000075886    UP000000803    UP000076408    UP000007801    UP000001292    UP000192221    UP000075920    UP000001819    UP000008744    UP000078492    UP000235965    UP000076407    UP000075840    UP000075903    UP000075882    UP000007062    UP000037069    UP000075902    UP000092443    UP000092460    UP000005203    UP000242457    UP000075900    UP000078542    UP000092444    UP000076502    UP000078200    UP000095301    UP000053105    UP000075884    UP000075881    UP000215335    UP000002358   

PRIDE

Q9VDZ1   

Pfam

PF07576   BRAP2        + More
PF13639   zf-RING_2
PF02148   zf-UBP

Interpro

IPR001607   Znf_UBP        + More
IPR001841   Znf_RING       
IPR011422   BRAP2       
IPR013083   Znf_RING/FYVE/PHD       
IPR035979   RBD_domain_sf       
IPR034932   BRAP2_RRM       
IPR042180   IF_rod_dom_coil1B       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.40.10     1.20.5.1160    

CDD

cd12718  RRM_BRAP2

ProteinModelPortal

A0A2A4JH71   A0A437BLM8   A0A194PRP4   S4PXK4   A0A1E1W540   A0A1E1WCY9   + More
A0A0N1PHU3   D2A5C1   A0A1Y1LUA4   U5ESP9   A0A1L8DTH2   A0A1B0CVF8   Q177G7   A0A182G3F9   A0A1J1HS73   A0A084VJA9   B4LZK5   A0A0Q9WR96   A0A1Q3FBJ2   B0W941   A0A182IZD4   B4KD18   A0A0M4EW95   A0A151JZW2   A0A1B6H9S7   B3P363   A0A336LY22   A0A2M3Z681   W5JHW4   A0A067RBB1   A0A195AZ85   A0A2M3Z5C3   E2A8Y9   A0A0J7KNL5   F4W4B5   B4PMS7   A0A158NMI5   A0A182FRB0   A0A2M4BHH2   A0A2M4AG93   A0A1I8NZ06   A0A2M4AGB4   B4JUX3   B4NIT3   A0A182PNE0   A0A151XH94   A0A3B0JNT2   A0A026WFF1   A0A3L8DJK2   A0A182MAH7   N6U3R6   E2BA11   A0A3B0JNH6   A0A182Q5G0   Q9VDZ1   A0A0B4KHR2   A0A182Y466   A0A1B6L8D8   B3M2F3   B4IHX9   A0A1W4UN00   A0A182W023   Q293Q0   B4GLT1   A0A151IY98   A0A2J7PX41   A0A1B6F5P3   A0A182XGJ1   A0A182HZT5   A0A182VFT5   A0A182LQW2   F5HMZ5   A0A0L0BQZ1   A0A182UBF9   A0A1A9Y6P5   A0A1B0BNK6   A0A2J7PX57   Q7PYV7   A0A088ATA2   A0A310S763   A0A2A3EI35   A0A182RNV7   A0A195CX58   A0A1B0G7Z4   A0A154NWZ6   A0A1A9VB81   T1PGB2   A0A1I8N9H3   A0A0M9AB45   A0A182N682   A0A182JUI4   A0A232F1X9   K7IYZ0   A0A0K8UZ32   A0A034W5L1   E9IXK5   A0A0A1X4T7  

PDB

5G0F     E-value=3.02741e-05,     Score=114

KEGG

101736390    K10632 BRCA1-associated protein [EC:2.3.2.27] | (RefSeq) BRCA1-associated protein

GO

GO:0008270   GO:0003676   GO:0005737   GO:0004842   GO:0016567   GO:0005515   GO:0004843   GO:0006511   GO:0008233   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

Length:

522

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0763300000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00467

outside

1  -  522

 

 

Pi

277.329663

Theta

186.861325

Tajima's D

1.624481

CLR

0.500547

CSRT

0.813009349532523

Interpretation

Uncertain