SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09981
Pre Gene Modal
BGIBMGA013218
Annotation
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr16(-):14053369-14080971      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.979
 

Sequence

CDS
ATGGGTGCAAAAGACTCAAAACCTAGTTTTATAACGTATGAAGATGCAGTTAAACGAGTATCCGATAGTGAATTGAGACGCATCAGAGAAGCATTCAAGAGATGTGCCGGAGCGAACGGGACGGCACTGAGCCTGGAGGCTTTTGTTCACGAGGTTCTGTGCGACGGAGTTCCGTACGATGTTGCGGAATGGTTGTACCAGGCCTGCGGAGGCACCAAAAGGGGAATCGCATTCAAGGAACTCCTCTGCGGCATAGTAGTCCTCACTAAGGGCAACTTGGAGGAGAAAATAAAGTTTCTGTGGACCCTGTATGTAAACAATCAAGGAGATAATGGCTCATACATATATAAAAAGGATTTTGCTCGAGCCCTGCACCTGGAGAATACGTCTCTCCCTGCCACTGCAGCGCAGCGCTCAGCTGAAATACTCCTTGGCCTCTTTGGCGCAGGAGACAAAGTTACATTTGACCAGTTTAGGTCTTGGCTACTCATACACAAAGATGCTACAGTGCTGTCAAAATGGCTACTGTCTGAAGTAAATGATGTTTATGATCTGGAAACCCCCACTTTTTATCAGACCTTGGCTGGTGTTACTCATTTGGAAGAGAGGGATATAATAGAGCTAGAAAAGTGCTTCTGGTCGCTCCGGAACGGCGCCCCGACGGGGCAGCTGGACGCGGAGAGCCTCGGGCCGCTGCTGTCCCCCCCGCTACCCGCCGCCGCCGTCGCGGGGACCTTCCTCGCCTTCGACGAGAACCGCGACGGACACGTCGACTTCAAGGAGCTGTGCTGCGGACTGAGCGCTGCCTGCCGCGGACCCACCACCGAGAGATTGAAATTTTGCTTCAAGATCTTCGATCTGGACAGCGATGGACTCTTGAATAAAAAAGAACTCATCGATATGGTGAGTGTCCTGTGCGAGGTGGCCAACGAGAACCTCAAGAACCAGGGGTCCAGATCCTCCACGCCCGATGGGAGCGAGATGGGGATCCAGAACTTCGACCCGGACGTGATCCTCGCCAACTTGAGGGACAAGCTGGTCGTCGCACCCAAGAACGGACGGAAACCGAACTTCCACCTCGGACCCCACGGAGATACTGAAGATATCATTAATGTGCCGGAGAGCAAGGCCGATGGAGACGTGCTGCTTCCGGAGACGGTGCTGACGCTGGAGGACTTCCTCATCTGGTCGGTGGAGAGCGCCCACGGAGTCGTGACGCCCTTCCTCGACCTCGTCTACCAGGTGTGCCACATCGTGCTGGGGCTGCGGCCGCACTGCCGACACAGCGAGAGGGACATCGTGCTGGGCTGGCTGCGTCGCTCGGTGGCGCGGGGGTACAGCGTGGGACAGTTCTGGTACCTGGTGGCGGCCGAGTGGTGGGGCGCGTGGCTGGCCTACACGGGGGACGCGGCGGACGCGTGCTGCCGGCCCGCGACGCTGGCCGACGACAGCTTCATGACCAACTCCACGGAGTCCATGGGCTCGCTGCTGTGGCGCTGCGAGACGGCCTCCGTGGACAGCGCGGGCTCCAGCAGCGGCGTCAGCAGCGCCGCGTCGCCGCGCCGGCACCCCGGCTCCGTGCGGAACAAGCGCCTGCTGGCGGACAACACGCTCAAGGTCCGTACGCTAACAGGCGAGGGCGGCCACCTGCGGCGCGACGTGACGCTGGCGCAGCACCGCGACTTTGAGCTGGTGCCGGACGCGCTGTGGAGGGCCCTGGCGCTCTGGTACGGAGGACCCGACCCTCTGCCCAGACAGGTGATAAGGCCTCCGAACTCTGACGTGGAGCTGGAGCTGTACCCGCTGCAGCTCAAGATCATGCGGCACGTGCCTGCCGCGCTCGGCACGCACGGCTCGGCGGGCTGCGTGCCGGACCGCCAGCTCGCCTACACCGCCGCCTTCTCGCGCCTCGCCACCATCCGCCAGGTTTGCGAGTTTATATGCGGCGCCTTGGGTCTGGCACGAGAAGACATGCGCCTGTGGCTGCTGGGGGGGCAAGGGGGGGGCGTTGCCGGCGCGCAGGCGGGGGGCCACGCGGGGGGCGTGCTGCTGGACGACGAGCAGCGCACGCTGCACGAGCTGCACCTCGACGAGCGCTCCCGGCTGCTGCTCGAGCTCCGGAACAAGGACCTCACGTGGCCGGAGGAGATCGGAGCCATCAGCTCCAACCGCGCGACGGAGAGACGCGAGACCCTCATCGCCCCCAACCTGCCGGGAGCCACCGGCCTGCACAACCTGGGGAACACCTGCTTCATGAACGCGGCGCTGCAGTCGGTGTGGAACACGGGCCCGCTGACGCGCTACTTCAACTCCGGCATGCACCTGTACGAGGTGAACCCCGGCAACCCGCTGGGCACCGGCGGCGCGCTGGCCGTGCGCTACGGGGAGCTGTGCAAGGAGGTGTGGTCGTGCAGCGCGCGCTCGGTGGCGCCGCTGGGCGTGCGCTGGTGCGTGTCCCGGCACGCGCGCGCGCTGGCGGGCGGCGGCCAGCACGACGCGCAGGAGCTGCTGGCGTGGCTGCTGGACGCGCTGCACGAGGACCTCAACCGCGCGCGCCCCCCCGCGCCCGCGCCCGCCCCCGCGGACTCCGCCGGCCGCCCCGACCAGGTGGTGGCGGCCGAGGCGTGGGAGGCGCACACGGCGCGGAACCAGTCCATCATCACGGAGCTGTTCTACGGGCAGCTGAAGTCCAAGGTGCGCTGCGACACGTGCGGCCACGAGAGCGTCCGCTTCGACGCCTTCAACATGCTGAGCCTGCCGCTGCCCATGGAGTCCTACCTGCGCTGCGAGATCAAAGTGATACTACTAGACGGATCGGTCCCCGTGAAGTACGGCGTCAGAGTCAACTCGGAAGGGACGTACCTGGACCTCAAGAGGAAGCTGTCGGAGCTGTGCGGCCTCCCGCCGGACCTGCTGCTGCTGGCGGAGCTGTCCGGCGCCACCATCGGCCGCGAGCTGCGCGACGCCGACAAGCTGACGGCCGCCGGCGCCGCCGACCTGCACGCCTACGAGCTGCCGCCCCCCCGCGAGCCCCCCGCCGCCCGCGACCTGCTGCAGCCCGACGGTCAGTGCCCCCCGCCCGCCCCGCGCCCCGAGCCTCGCCCCGGCCACTACAGCCCACCCTCTCGTGTTGCAGGCTGGTGCGAGGAGGCGAGCCAGTGGGCGGAGGTGAGTGTGGGCCGCGCCGCCAATCCTTCCTCACTCTGCATGCCTGCACTGTTCTGCTTCAAGAGGTCGCGGTCGGAGATGCTCATGTCGCAGAGTCCGCCGACGACGTTCTACGAGAAGCAACACCACCAGGACCGACTCCGCAGCCAGACCCTGCCCAAAGACATGACCAGAGGAAACAGCTCACCCGCGCTCAGCGTCAAGTCGCTCAACGTGAAGCCGGCTAGCCCCAGACTGGCCAAGGTCAAGTTTGGCTCGTCTCCCTCCAACATGTACAAGATGAGCGAGACGGCAGGCCCGTCGCTCGTCCCCAAACAGACGAACTACCTGGTGGCCGTGCACAGGAAGCAGTGCCGCGCCGACGCGTACTTCCTGTCGTCGCAGCGCAGCCGCCCCGCGCTGTTCGGCGTGCCGCTGCTGGTGCCGGTGGAGCCGGGCCAGTCGGGCCGCCAGCTGTACGCCGCCGTGTGGAGGCAGGTGGCGCGCCTGCTGTCCGCGCGGCCGCCCAGCGCCGACCTCAACCACGCCACCGACTGCGACGACAGCCTGGGGTACGAGTTCCCGTTCACGCTGCGGGCCGTGCGCGCGGACGGCGCGTGGTGCGGGCGCTGCGCGTGGCCGGCGCTGTGCCGCGGCTGCGCGCTGCCGCTCGACGACCGCCCGCTCGTCGCGCACGCTGACGGTACTATACCCGTGTTGAAGAAGCGGTCCGGCGAGGAGCCCCCGGACGAGGAGCCGGGTCCGGCGGGTCGACCGCGCCAGCCGCCGGGCGCGCGCTCCGCCAGCCGACCCGACGTTAGTGCACGCCTTACTGTAACTGCGAACTCACCAATTTCAGGACGTATTAAGCTGGAGACGTTGCAGGGCGGGTGCTGGCTGCGCGCGGGGTCGGGGCGCGTGCTGCTGGCGGTGGACTGGGAGCCCACGGCGCTGCATCTGCGCTACAGCAGCGCGCTGGAGCGGGCCTGCGCGGAGCACGGCTCGGTGCGGGCGGGCGGCGCGCGGCCGGCGGGGCTGGCCTCCTGCCTGCGCGCCTTCACCCGCGCCGAGCGCCTGGAGCAGCACTACCGCTGCGCGCGCTGCCGCTCCCACCAGCCCGCCACCAAGACGCTGCAGATATGGCGCCTGCCGCCCATCCTGATCATCCACTTGAAGCGGTTCCAGTACGTCAACGACAAGTGGATAAAGTCGCAGAAGGTGGTTAACTTCCCGTACCGCGACTTCGACCCCACGGAGTTCCTGGCCGCCGTGCCGCAGGAGACCATCCTCCGCCACGCCGAGATCAACTACGTCTTCACGAGCAGGCCCTCCCAGCTCCTCCACGACGCCGCGTCCGGCAGCGACGGGGAGGACGACAGCGACTCCGACGCTGACGGACCCGAGCAGACCGGCTGCGCGCGGCGGAGGAGCAGGTCGCCGGACAGCGCGGCGCGGCGCCGGCTGCAGTCCACCAGCCTGGCCAGCACGCCCGTCACCGCGGACAACCTGCAGGACTTCCACCGCCATCTGCTGCAGGACGACCAGGATCCGCTCGACCTCAAGTACAGCCTCTACGCGGTGGTGTCGCACTCGGGCCAGATGAGCGGCGGGCACTACGTGGCGTACGCGCGCAACCCGTCGGGCACGTGGCTGTGCTACAACGACTCCATGTGCCGCGCCCTGCCGCCGTCTGCCGAGCCGCCCATCGACCCCGCCACCGCCTACCTGCTGTTCTACGAGCGGCAGGGGCTGGACTACGACCGCTACCTGCCCGACGTAGGCGACCGCCGCCCCGCCGCCGGCCTGCTCGACCCGGACGACTCCGACCTCCGGAAGATGTGCGTGCTCGGCTAG
Protein
MGAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVLCDGVPYDVAEWLYQACGGTKRGIAFKELLCGIVVLTKGNLEEKIKFLWTLYVNNQGDNGSYIYKKDFARALHLENTSLPATAAQRSAEILLGLFGAGDKVTFDQFRSWLLIHKDATVLSKWLLSEVNDVYDLETPTFYQTLAGVTHLEERDIIELEKCFWSLRNGAPTGQLDAESLGPLLSPPLPAAAVAGTFLAFDENRDGHVDFKELCCGLSAACRGPTTERLKFCFKIFDLDSDGLLNKKELIDMVSVLCEVANENLKNQGSRSSTPDGSEMGIQNFDPDVILANLRDKLVVAPKNGRKPNFHLGPHGDTEDIINVPESKADGDVLLPETVLTLEDFLIWSVESAHGVVTPFLDLVYQVCHIVLGLRPHCRHSERDIVLGWLRRSVARGYSVGQFWYLVAAEWWGAWLAYTGDAADACCRPATLADDSFMTNSTESMGSLLWRCETASVDSAGSSSGVSSAASPRRHPGSVRNKRLLADNTLKVRTLTGEGGHLRRDVTLAQHRDFELVPDALWRALALWYGGPDPLPRQVIRPPNSDVELELYPLQLKIMRHVPAALGTHGSAGCVPDRQLAYTAAFSRLATIRQVCEFICGALGLAREDMRLWLLGGQGGGVAGAQAGGHAGGVLLDDEQRTLHELHLDERSRLLLELRNKDLTWPEEIGAISSNRATERRETLIAPNLPGATGLHNLGNTCFMNAALQSVWNTGPLTRYFNSGMHLYEVNPGNPLGTGGALAVRYGELCKEVWSCSARSVAPLGVRWCVSRHARALAGGGQHDAQELLAWLLDALHEDLNRARPPAPAPAPADSAGRPDQVVAAEAWEAHTARNQSIITELFYGQLKSKVRCDTCGHESVRFDAFNMLSLPLPMESYLRCEIKVILLDGSVPVKYGVRVNSEGTYLDLKRKLSELCGLPPDLLLLAELSGATIGRELRDADKLTAAGAADLHAYELPPPREPPAARDLLQPDGQCPPPAPRPEPRPGHYSPPSRVAGWCEEASQWAEVSVGRAANPSSLCMPALFCFKRSRSEMLMSQSPPTTFYEKQHHQDRLRSQTLPKDMTRGNSSPALSVKSLNVKPASPRLAKVKFGSSPSNMYKMSETAGPSLVPKQTNYLVAVHRKQCRADAYFLSSQRSRPALFGVPLLVPVEPGQSGRQLYAAVWRQVARLLSARPPSADLNHATDCDDSLGYEFPFTLRAVRADGAWCGRCAWPALCRGCALPLDDRPLVAHADGTIPVLKKRSGEEPPDEEPGPAGRPRQPPGARSASRPDVSARLTVTANSPISGRIKLETLQGGCWLRAGSGRVLLAVDWEPTALHLRYSSALERACAEHGSVRAGGARPAGLASCLRAFTRAERLEQHYRCARCRSHQPATKTLQIWRLPPILIIHLKRFQYVNDKWIKSQKVVNFPYRDFDPTEFLAAVPQETILRHAEINYVFTSRPSQLLHDAASGSDGEDDSDSDADGPEQTGCARRRSRSPDSAARRRLQSTSLASTPVTADNLQDFHRHLLQDDQDPLDLKYSLYAVVSHSGQMSGGHYVAYARNPSGTWLCYNDSMCRALPPSAEPPIDPATAYLLFYERQGLDYDRYLPDVGDRRPAAGLLDPDDSDLRKMCVLG

Summary

Similarity
Belongs to the peptidase C19 family.
Uniprot
H9JUK5   A0A194PRA2   A0A139WG97  
Pubmed
19121390    26354079    18362917    19820115   
EMBL
BABH01022562    BABH01022563    BABH01022564    BABH01022565    BABH01022566    BABH01022567    + More
BABH01022568    KQ459595    KPI95981.1    KQ971346    KYB26972.1   
Proteomes
UP000005204    UP000053268    UP000007266   
PRIDE
H9JUK5   
Pfam
PF00443   UCH        + More
PF06337   DUSP
PF13202   EF-hand_5
Interpro
IPR018247   EF_Hand_1_Ca_BS        + More
IPR028889   USP_dom       
IPR002048   EF_hand_dom       
IPR035927   DUSP-like_sf       
IPR018200   USP_CS       
IPR038765   Papain-like_cys_pep_sf       
IPR006615   Pept_C19_DUSP       
IPR001394   Peptidase_C19_UCH       
IPR011992   EF-hand-dom_pair       
SUPFAM
SSF54001   SSF54001        + More
SSF143791   SSF143791       
SSF47473   SSF47473       
CDD
cd00051  EFh
ProteinModelPortal
H9JUK5   A0A194PRA2   A0A139WG97  
PDB
6CRN     E-value=2.39309e-43,     Score=448

Ontologies

KEGG
101736510    K11837 ubiquitin carboxyl-terminal hydrolase 6/32 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-termi
GO
GO:0016579   GO:0004843   GO:0005509   GO:0006511   GO:0005794   GO:0008233   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824   GO:0036459  

Topology

Length:
1666
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0195999999999999
Exp number, first 60 AAs:
0.00172
Total prob of N-in:
0.00034
outside
1  -  1666
 
 

Population Genetic Test Statistics

Pi
216.030098
Theta
181.201287
Tajima's D
0.868029
CLR
0.958994
CSRT
0.617769111544423
Interpretation
Uncertain
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