SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09973
Pre Gene Modal
BGIBMGA013220
Annotation
PREDICTED:_estradiol_17-beta-dehydrogenase_8-like_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.435
 

Sequence

CDS
ATGAGTTTTTCTAGTAAAATCGTTTTGATTACAGGAGCCAGTAGAGGAATAGGCGCAGCAACAGCGATAATGTTCGCTAAAGAAGGGGCTGATGTAATAATTGTTGGAAGAAATGAAGAAAAACTCAAAGAAGTCGAAGTGGAATGTTCTAAATTTGGTAAGAAACCCCTTGTTATTACGGCGGATTTGGCGAAAGATGAGCAAGTTAAAGGTATAGTCAATAAAACTATAGATGCATTCGGAAAACTGGATATATTAATTAACAATGCTGGCATACTAAAGGAAAATGACATTAAGTCAGAAGGCTTCATAGAGACTTTCGACGAAGTGATGAACACAAACCTAAGAGCTTCTGTATTGATAACCAACGTGGCCATACCACACCTGATCAAAACAAGAGGCAATATCATTAATGTTTCTAGTGTCGCTGCAACTTCAACATCAGTTGTTAATTCTGTTACGTACAAAGTATCTAAAGCCGCCCTCAACCATTTCACTCGCTGCATAGCCTTAGAACTTGCTCCTCATGGCATCCGAGCTAACACAGTGAGCCCTGGCCCTGTGGAAACAGATATTTTCGAAACAGCTGGGATTCCAGAAGCACTACAAAATTATGCAGGACAACTTCCCCTTAAGAAAGTCGGCAAGAAAGAAGAAGTGGCAGATTTGATCTTGTTTTTGGCCAGCGAGAAAGCGCAAAGTATAACCGGAGCGAATTACGTTATAGATAATGGGTGGCTGTTAAACTAA
Protein
MSFSSKIVLITGASRGIGAATAIMFAKEGADVIIVGRNEEKLKEVEVECSKFGKKPLVITADLAKDEQVKGIVNKTIDAFGKLDILINNAGILKENDIKSEGFIETFDEVMNTNLRASVLITNVAIPHLIKTRGNIINVSSVAATSTSVVNSVTYKVSKAALNHFTRCIALELAPHGIRANTVSPGPVETDIFETAGIPEALQNYAGQLPLKKVGKKEEVADLILFLASEKAQSITGANYVIDNGWLLN

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01022634    BABH01022635    BABH01022636    KQ460655    KPJ12937.1    KPJ12939.1    + More
BABH01022835    ODYU01001522    SOQ37854.1    JF433973    AEM17060.1    NWSH01001398    PCG71373.1    KQ459595    KPI95966.1    NWSH01001353    PCG71567.1    NWSH01003146    PCG66863.1    KQ461178    KPJ07786.1    JTDY01009080    KOB64125.1    KPI95965.1    JTDY01000942    KOB75350.1    AF255341    AAF70499.1    AK405443    BAM20756.1    KPJ07785.1    BABH01012981    KQ459602    KPI93176.1    KPJ07784.1    JTDY01006084    KOB66312.1    KQ459717    KPJ20326.1    KPI95964.1    ODYU01000551    SOQ35503.1    ODYU01013212    SOQ59906.1    KPI93178.1    KPJ12938.1    PCG71374.1    JTDY01004206    KOB68460.1    JTDY01001151    KOB74729.1    KPI93177.1    PCG71376.1    NWSH01006959    PCG63175.1    ODYU01002398    SOQ39832.1    PCG71569.1    KPI93179.1    PCG71375.1    ODYU01011234    SOQ56848.1    KQ459596    KPI95296.1    ODYU01010604    SOQ55826.1    ODYU01010994    SOQ56451.1    AGBW02014512    OWR41546.1    OWR41545.1    NWSH01004416    PCG65150.1    ODYU01005275    SOQ45968.1    JTDY01000816    KOB75772.1    PCG65148.1    KQ459579    KPI99448.1    JTDY01008777    KOB64404.1    KQ460650    KPJ13113.1    SOQ37853.1    KOB66313.1    PCG71568.1    EZ407245    ACX53802.1    SOQ37852.1    ODYU01009744    SOQ54378.1    PCG65151.1    PCG65149.1    AGBW02013539    OWR43254.1    BABH01011332    KZ149910    PZC78151.1    KQ460571    KPJ13957.1    AGBW02010784    OWR47781.1    ODYU01002131    SOQ39232.1    NWSH01000134    PCG79206.1    JTDY01010313    KOB58251.1    AK404043    BAM20116.1    KQ460317    KPJ16010.1    ODYU01008068    SOQ51354.1    KQ459580    KPI99297.1    JTDY01004127    KOB68555.1    AGBW02012537    OWR44869.1    PZC78149.1    PZC78150.1    ODYU01010177    SOQ55120.1    GEYN01000194    JAV44795.1    KOB64405.1    ODYU01012735    SOQ59194.1    AK401409    BAM18031.1    JTDY01007623    KOB65070.1    BABH01002061    BABH01022833    BABH01022834    LADJ01004337    KPJ20878.1    GEYN01000185    JAV44804.1    GEYN01000184    JAV44805.1    KQ459604    KPI92523.1    KQ460254    KPJ16339.1    GL888128    EGI66780.1    NWSH01000090    PCG79695.1    AK403809    BAM19952.1    KQ459765    KPJ20037.1    GFDF01007687    JAV06397.1    ODYU01001753    SOQ38389.1    AGBW02010783    OWR47824.1    KQ459591    KPI96972.1   
Pfam
PF00106   adh_short        + More
PF00292   PAX
Interpro
IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR036388   WH-like_DNA-bd_sf       
IPR009057   Homeobox-like_sf       
IPR001523   Paired_dom       
SUPFAM
SSF51735   SSF51735        + More
SSF46689   SSF46689       
Gene 3D
PDB
1XHL     E-value=7.02364e-37,     Score=383

Ontologies

Topology

Subcellular location
Nucleus  
Length:
249
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.71076
Exp number, first 60 AAs:
1.67843
Total prob of N-in:
0.09952
outside
1  -  249
 
 

Population Genetic Test Statistics

Pi
210.090473
Theta
185.036447
Tajima's D
0.440662
CLR
0.071351
CSRT
0.494475276236188
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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