Gene

KWMTBOMO09969  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013223

Annotation

PREDICTED:_nuclear_pore_complex_protein_Nup88_[Bombyx_mori]

Location

Bomo_Chr16(-):13076438-13213926      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.945

CDS

ATGAGCAGCTGTGGTAGCAGAATCTGCGTCTGGGGTACTCAAGGTGTCACTATAGCTGAACTACCTTCGAGATGGGGTCGCGGTGGACTCTTCGATTCTGGCAGTCAAACCGTGCTTTGCAAGAGCTATAGTCTGGACGAGAAATTCCTGTACACGACTGGCGAGATTCGCAGGGTCCACTGGCATCCGATATCTCTATCACACGTACTGGTCTTAGTCTCCAATAATGCGATCAGACTGTACAATGTAACCTTGAAAACCGGTCCGAAGCTGGTGAAGACATACTCTATTGGTCCGAAACCGACCAGCCTCCTCGCCGGCAAGACGATTCTGGACAGTCTCGGAGACACTGCAGTGGATTTCACGCCGACGCCTGACGCGGAGCACATCCTGATCCTGAGGGGCGATGGAGAAATTTACATGATGGACTGTGATCTGACTAATAAAAGTCCACTCCAGCCGAAGCTCGTTGGACCCCTCGCCATATATCCCCCTGCGGACGACAATTACGGCTCGGACTCTTGCTGCATCCTGTGCATGGGGGGCAGCGACATCCCCCCCCTGGTCGTCATCGCGACTTCCTCGGCCGCTCTGTACCACTGCTTGCTGCTACCAAATAGCGAGAAAGAAGAGAGCGACAGAGACGGCTACGCTCTGTACGTGGTGGAGACCGTGGAGTTGGACGTGGTACCGGAGCCCGACGCGGAGCCCTACCCCGTGCAGCTGATCAAGTGCACGGACGACACGTACGCGTGCGTGCACGCGGCGGGCGCGCACACCGTCGCGCTGCCCGTGCTCGCCGCGCTGCGACACTACGCGCGCGCACCCGACGGTAACCACCCGCCGCTCGGTCGGCTGTACGGACACACCACACTCACTGTCCACTCGCCGCTCTGTCGGCTGTAG

Protein

MSSCGSRICVWGTQGVTIAELPSRWGRGGLFDSGSQTVLCKSYSLDEKFLYTTGEIRRVHWHPISLSHVLVLVSNNAIRLYNVTLKTGPKLVKTYSIGPKPTSLLAGKTILDSLGDTAVDFTPTPDAEHILILRGDGEIYMMDCDLTNKSPLQPKLVGPLAIYPPADDNYGSDSCCILCMGGSDIPPLVVIATSSAALYHCLLLPNSEKEESDRDGYALYVVETVELDVVPEPDAEPYPVQLIKCTDDTYACVHAAGAHTVALPVLAALRHYARAPDGNHPPLGRLYGHTTLTVHSPLCRL

Uniprot

H9JUL0   A0A2H1V4V0   A0A2A4J2J7   A0A437B4U6   A0A194PR82   A0A212F238   + More
A0A088AVE5   A0A2A3EA02   C3Z4B2   A0A3L8DCT3   A0A067RBL6   A0A195C450   A0A0L7R3E1   A0A026WS47   A0A158NAP1   A0A195FSH0   K7IRP9   A0A2G8L9L5   A0A195ELF7   A0A195BK04   F4WC99   A0A2C9LBJ3   A0A232FAS0   A0A2H8THQ2   A0A2S2QPX8   J9JUX4   A0A1S3K2A1   A0A091RBY0   A0A210PUU6   A0A091FZK2   A0A091KVE7   A0A226NAZ1   F7C806   A0A226PFM8   A0A2J7PF88   A0A091M9F2   R0KBU3   U3J887   A0A0M9A1Q9   A0A2J7PF85   A0A2J7PF78   Q4KLQ6   A0A1L8HGG3   A0A091VFQ6   Q707N0   Q6DDV7   A0A091LLF1   A0A099ZN49   A0A1W7RF41   A0A3M6TZT3   A0A0F7Z6N7   A0A2I0M1N3   A0A1V4K4F1   A0A2P4T6F4   A0A091QYZ7   A0A091F5W4   A0A401RK05   A0A093HMK8   A0A091H560   A0A0A0AIR4   G1MW57   A0A093NUJ0   A0A087QWL4   A0A091JKJ7   A0A2B4SJ52   A0A3S3QC56   A0A091WBI7   A0A287BTG5   A0A091TCL3   A0A091SQC6   A0A2L2Y686   A0A093TM60   A0A093FQV0   A0A1L8H8E3   Q707M9   A0A287A9U8   A0A093EX49   A0A093QBM5   A0A094KUV1   A0A3B4CFQ5   A0A310SHE4   V8NR27   A0A093LQS9   F6Y295   G9KEE4   A0A2R8QUY6   H0Z1I3   A0A3B1JBP6   A0A1S3EXT6   A0A093G5N5   M3X5U7   A0A3B1JX91   E2BG54   A2CEI4   W5KJA4   A0A087TNT3   A0A444V329  

Pubmed

19121390    26354079    22118469    18563158    30249741    24845553    + More
24508170    21347285    20075255    29023486    21719571    15562597    28648823    28812685    20431018    24621616    23749191    27762356    14673138    26358130    30382153    23371554    30297745    20838655    26561354    24297900    23236062    23594743    20360741    25329095    17975172    20798317   

EMBL

BABH01022652    ODYU01000679    SOQ35863.1    NWSH01003392    PCG66377.1    RSAL01000158    + More
RVE45530.1    KQ459595    KPI95961.1    AGBW02010784    OWR47784.1    KZ288311    PBC28555.1    GG666578    EEN52725.1    QOIP01000009    RLU18310.1    KK852571    KDR21117.1    KQ978292    KYM95395.1    KQ414663    KOC65343.1    KK107119    EZA58852.1    ADTU01009895    ADTU01009896    ADTU01009897    ADTU01009898    ADTU01009899    KQ981305    KYN42849.1    MRZV01000159    PIK56946.1    KQ978739    KYN28767.1    KQ976455    KYM85027.1    GL888070    EGI68079.1    NNAY01000508    OXU27941.1    GFXV01001848    MBW13653.1    GGMS01010377    MBY79580.1    ABLF02022558    KK812755    KFQ36757.1    NEDP02005477    OWF40258.1    KL447643    KFO75645.1    KK543951    KFP31719.1    MCFN01000112    OXB64754.1    AAMC01063017    AWGT02000078    OXB78866.1    NEVH01026085    PNF14995.1    KK526789    KFP68438.1    KB742489    EOB07826.1    ADON01011640    KQ435762    KOX75540.1    PNF14994.1    PNF14993.1    BC099049    AAH99049.1    CM004468    OCT95176.1    KL410945    KFR01288.1    AJ617672    CAE85030.1    BC077397    AAH77397.1    KK756889    KFP43631.1    KL896091    KGL83207.1    GDAY02001663    JAV49764.1    RCHS01002548    RMX46867.1    GBEX01002324    JAI12236.1    AKCR02000048    PKK23585.1    LSYS01005108    OPJ78757.1    PPHD01007173    POI31943.1    KK685972    KFQ14574.1    KK719555    KFO64247.1    BEZZ01002969    GCC18488.1    KL206523    KFV82971.1    KL524072    KFO90549.1    KL871755    KGL93348.1    KL224795    KFW63812.1    KL225959    KFM05618.1    KK502172    KFP21117.1    LSMT01000082    PFX28502.1    NCKU01000064    RWS17522.1    KK733763    KFQ99090.1    AEMK02000082    KK447438    KFQ72059.1    KK482465    KFQ60917.1    IAAA01018538    LAA03674.1    KL445521    KFW95339.1    KK632805    KFV56686.1    CM004469    OCT92377.1    AJ617673    CAE85031.1    KK377050    KFV46469.1    KL672574    KFW86373.1    KL267256    KFZ62405.1    KQ763450    OAD55069.1    AZIM01002217    ETE64505.1    KK576996    KFW11071.1    JP014671    AES03269.1    BX957294    ABQF01026138    KL215363    KFV64398.1    AANG04000740    GL448115    EFN85322.1    CR450697    KK116094    KFM66772.1    SCEB01002963    RXM94817.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000005203    + More
UP000242457    UP000001554    UP000279307    UP000027135    UP000078542    UP000053825    UP000053097    UP000005205    UP000078541    UP000002358    UP000230750    UP000078492    UP000078540    UP000007755    UP000076420    UP000215335    UP000007819    UP000085678    UP000242188    UP000053760    UP000198323    UP000008143    UP000198419    UP000235965    UP000016666    UP000053105    UP000186698    UP000053283    UP000053641    UP000275408    UP000053872    UP000190648    UP000052976    UP000287033    UP000053584    UP000053858    UP000001645    UP000054081    UP000053286    UP000053119    UP000225706    UP000285301    UP000053605    UP000008227    UP000053258    UP000261440    UP000000437    UP000007754    UP000018467    UP000081671    UP000053875    UP000011712    UP000008237    UP000054359   

PRIDE

H9JUL0    A2CEI4   

Pfam

PF10168   Nup88        + More
PF15070   GOLGA2L5

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019321   Nucleoporin_Nup88       
IPR037700   NUP88/NUP82       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024858   Golgin_A       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JUL0   A0A2H1V4V0   A0A2A4J2J7   A0A437B4U6   A0A194PR82   A0A212F238   + More
A0A088AVE5   A0A2A3EA02   C3Z4B2   A0A3L8DCT3   A0A067RBL6   A0A195C450   A0A0L7R3E1   A0A026WS47   A0A158NAP1   A0A195FSH0   K7IRP9   A0A2G8L9L5   A0A195ELF7   A0A195BK04   F4WC99   A0A2C9LBJ3   A0A232FAS0   A0A2H8THQ2   A0A2S2QPX8   J9JUX4   A0A1S3K2A1   A0A091RBY0   A0A210PUU6   A0A091FZK2   A0A091KVE7   A0A226NAZ1   F7C806   A0A226PFM8   A0A2J7PF88   A0A091M9F2   R0KBU3   U3J887   A0A0M9A1Q9   A0A2J7PF85   A0A2J7PF78   Q4KLQ6   A0A1L8HGG3   A0A091VFQ6   Q707N0   Q6DDV7   A0A091LLF1   A0A099ZN49   A0A1W7RF41   A0A3M6TZT3   A0A0F7Z6N7   A0A2I0M1N3   A0A1V4K4F1   A0A2P4T6F4   A0A091QYZ7   A0A091F5W4   A0A401RK05   A0A093HMK8   A0A091H560   A0A0A0AIR4   G1MW57   A0A093NUJ0   A0A087QWL4   A0A091JKJ7   A0A2B4SJ52   A0A3S3QC56   A0A091WBI7   A0A287BTG5   A0A091TCL3   A0A091SQC6   A0A2L2Y686   A0A093TM60   A0A093FQV0   A0A1L8H8E3   Q707M9   A0A287A9U8   A0A093EX49   A0A093QBM5   A0A094KUV1   A0A3B4CFQ5   A0A310SHE4   V8NR27   A0A093LQS9   F6Y295   G9KEE4   A0A2R8QUY6   H0Z1I3   A0A3B1JBP6   A0A1S3EXT6   A0A093G5N5   M3X5U7   A0A3B1JX91   E2BG54   A2CEI4   W5KJA4   A0A087TNT3   A0A444V329  

KEGG

101737898    K14318 nuclear pore complex protein Nup88 | (RefSeq) nuclear pore complex protein Nup88

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0000055   GO:0017056   GO:0005623   GO:0000056   GO:0006611   GO:0005643   GO:0006606   GO:0006406   GO:0005794   GO:0005654   GO:0005515   GO:0006139   GO:0008408   GO:0006508   GO:0008233   GO:0005634   GO:0004672   GO:0030677   GO:0016155   GO:0003824  

PANTHER

PTHR13257   PTHR10881  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.44032

Exp number, first 60 AAs:

0.01128

Total prob of N-in:

0.05032

outside

1  -  301

 

 

Pi

239.693574

Theta

171.422492

Tajima's D

1.181127

CLR

0.365816

CSRT

0.715814209289536

Interpretation

Uncertain