Gene

KWMTBOMO09968  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013224

Annotation

PREDICTED:_nuclear_pore_complex_protein_Nup88_[Bombyx_mori]

Location

Bomo_Chr16(-):13064083-13074806      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.775

CDS

ATGCAGCTGAAGAACCCCGCCCTAGAGCTGGACGAAATTAACGCCATTTTAAAAGAGAGACAGAAGGTGTCGTTCACGGCCATCATACAGGAAATCCTCGCCCGGGAGGCGTCGCAGCCCCTGCTGCATCTGGACCGCCGCGCCGAGCCCGGGCCCCGGGACTGTCTCGAGCTGGTGACGCAGGCGACGCTGGCGCTGCGCGGCGAGTACGTGCGCCGCCAGCAGCGCGCCGCCGCCGCGCTCGCCCGCAAGCTGCACGCGCTGGGCGCCCTCGCGCGCCAGTACCGGGACTGGGCCGCCGACCTGCAGAATGAGTTGGAGCAGGCGAGGCAGCAGTCTGCTGCGCTCCGGGAGAAGTGCATAGTGGCGGAGACGCGCCAGGAGGATCTCAACAACAGATGCTCGGCGGTGTTGCGGCAGCTGCGGCAGAGCGCAGCAGTGTCGGAGGCGGAGGGCGCGCTGCTGGATGAGCTGCGGCAGCACGCGCGCACGCACCGCCGCGCGCTGCCCCGCCTGCACGCGCTGCGGGAGCGGGCACGCACGCACGCCGCGCAGATGGAGAAATGGCGTACGGAGTACAAGAAGAAGGACATCGCCCTGGGCCGGTCGCACAGCGAGACCATCTCCTCCGTCCTGCAGCAGCAGACGGCGCAGATAGCGACGCTGATCGAAGAGACCAAGCTGCTGCGGGACCAGCTCAGCCTCGTGTAG

Protein

MQLKNPALELDEINAILKERQKVSFTAIIQEILAREASQPLLHLDRRAEPGPRDCLELVTQATLALRGEYVRRQQRAAAALARKLHALGALARQYRDWAADLQNELEQARQQSAALREKCIVAETRQEDLNNRCSAVLRQLRQSAAVSEAEGALLDELRQHARTHRRALPRLHALRERARTHAAQMEKWRTEYKKKDIALGRSHSETISSVLQQQTAQIATLIEETKLLRDQLSLV

Uniprot

A0A2H1V4V0   A0A437B4U6   A0A212F238   S4P7E2   A0A194PR82   A0A2J7PF88   + More
A0A2J7PF78   A0A2J7PF82   A0A1I8MYA6   A0A1I8PFY1   A0A034VCR9   A0A0K8U9X7   A0A0K8VC53   A0A2P8YRY6   A0A0A1XHN4   W5M326   A0A093QBM5   A0A091F5W4   A0A218V245   A0A2I0M1N3   A0A1V4K4F1   E0VH47   A0A3M0KC99   U3K590   D2A6F8   A0A093EX49   H0Z1I3   A0A0A0AIR4   A0A091JKJ7   G1MW57   A0A091WBI7   A0A091RNI7   A0A091VFQ6   A0A093TM60   A0A091SQC6   A0A093G5N5   A0A087QWL4   A0A093LQS9   A0A093NUJ0   A0A093HMK8   A0A402EMJ6   A0A093FQV0   A0A091M9F2   A0A091TCL3   A0A091PSH5   N6TZ78   A0A226PFM8   R0KBU3   U3J887   K7FHA3   A0A091LLF1   A0A1D5PUD5   A0A099ZN49   U4U1X3   U4U0E4   A0A452HSR3   A0A094KUV1   A0A1Y1L9A3   H0ZXH6   A0A2U9B4G2   W8BB47   A0A0F7Z6N7   A0A1W7RF41   A0A091QYZ7   A0A151N5I3   A0A1U7S4S5   A0A437CRE3   V9KMI0   H9GMB5   A0A0Q3PKL8  

Pubmed

22118469    23622113    26354079    25315136    25348373    29403074    + More
25830018    23371554    20566863    18362917    19820115    20360741    20838655    23537049    24621616    23749191    17381049    15592404    28562605    28004739    24495485    26358130    22293439    24402279    21881562   

EMBL

ODYU01000679    SOQ35863.1    RSAL01000158    RVE45530.1    AGBW02010784    OWR47784.1    + More
GAIX01004664    JAA87896.1    KQ459595    KPI95961.1    NEVH01026085    PNF14995.1    PNF14993.1    PNF14996.1    GAKP01019040    JAC39912.1    GDHF01028842    JAI23472.1    GDHF01015775    JAI36539.1    PYGN01000400    PSN47010.1    GBXI01004274    JAD10018.1    AHAT01005644    KL672574    KFW86373.1    KK719555    KFO64247.1    MUZQ01000070    OWK59831.1    AKCR02000048    PKK23585.1    LSYS01005108    OPJ78757.1    DS235158    EEB12703.1    QRBI01000111    RMC10839.1    AGTO01001464    KQ971347    EFA04928.2    KK377050    KFV46469.1    ABQF01026138    KL871755    KGL93348.1    KK502172    KFP21117.1    KK733763    KFQ99090.1    KK928839    KFQ44215.1    KL410945    KFR01288.1    KL445521    KFW95339.1    KK482465    KFQ60917.1    KL215363    KFV64398.1    KL225959    KFM05618.1    KK576996    KFW11071.1    KL224795    KFW63812.1    KL206523    KFV82971.1    BDOT01000024    GCF45432.1    KK632805    KFV56686.1    KK526789    KFP68438.1    KK447438    KFQ72059.1    KK664264    KFQ10198.1    APGK01055159    KB741261    ENN71557.1    AWGT02000078    OXB78866.1    KB742489    EOB07826.1    ADON01011640    AGCU01172389    AGCU01172390    KK756889    KFP43631.1    AADN05000057    KL896091    KGL83207.1    KB631024    ERL84015.1    KB631053    ERL84051.1    KL267256    KFZ62405.1    GEZM01066129    JAV68156.1    ABQF01099109    CP026245    AWO98641.1    GAMC01010643    JAB95912.1    GBEX01002324    JAI12236.1    GDAY02001663    JAV49764.1    KK685972    KFQ14574.1    AKHW03004004    KYO32021.1    CM012449    RVE65157.1    JW866857    AFO99374.1    AAWZ02031001    LMAW01002819    KQK76716.1   

Proteomes

UP000283053    UP000007151    UP000053268    UP000235965    UP000095301    UP000095300    + More
UP000245037    UP000018468    UP000053258    UP000052976    UP000197619    UP000053872    UP000190648    UP000009046    UP000269221    UP000016665    UP000007266    UP000007754    UP000053858    UP000053119    UP000001645    UP000053605    UP000053283    UP000053875    UP000053286    UP000054081    UP000053584    UP000288954    UP000019118    UP000198419    UP000016666    UP000007267    UP000000539    UP000053641    UP000030742    UP000291020    UP000246464    UP000050525    UP000189705    UP000001646    UP000051836   

Pfam

PF10168   Nup88

Interpro

IPR037700   NUP88/NUP82        + More
IPR019321   Nucleoporin_Nup88       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2H1V4V0   A0A437B4U6   A0A212F238   S4P7E2   A0A194PR82   A0A2J7PF88   + More
A0A2J7PF78   A0A2J7PF82   A0A1I8MYA6   A0A1I8PFY1   A0A034VCR9   A0A0K8U9X7   A0A0K8VC53   A0A2P8YRY6   A0A0A1XHN4   W5M326   A0A093QBM5   A0A091F5W4   A0A218V245   A0A2I0M1N3   A0A1V4K4F1   E0VH47   A0A3M0KC99   U3K590   D2A6F8   A0A093EX49   H0Z1I3   A0A0A0AIR4   A0A091JKJ7   G1MW57   A0A091WBI7   A0A091RNI7   A0A091VFQ6   A0A093TM60   A0A091SQC6   A0A093G5N5   A0A087QWL4   A0A093LQS9   A0A093NUJ0   A0A093HMK8   A0A402EMJ6   A0A093FQV0   A0A091M9F2   A0A091TCL3   A0A091PSH5   N6TZ78   A0A226PFM8   R0KBU3   U3J887   K7FHA3   A0A091LLF1   A0A1D5PUD5   A0A099ZN49   U4U1X3   U4U0E4   A0A452HSR3   A0A094KUV1   A0A1Y1L9A3   H0ZXH6   A0A2U9B4G2   W8BB47   A0A0F7Z6N7   A0A1W7RF41   A0A091QYZ7   A0A151N5I3   A0A1U7S4S5   A0A437CRE3   V9KMI0   H9GMB5   A0A0Q3PKL8  

KEGG

101737898    K14318 nuclear pore complex protein Nup88 | (RefSeq) nuclear pore complex protein Nup88

GO

GO:0005623   GO:0000056   GO:0017056   GO:0000055   GO:0006611   GO:0006606   GO:0006406   GO:0005643   GO:0005654  

PANTHER

PTHR13257  

Length:

236

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01797

outside

1  -  236

 

 

Pi

291.810034

Theta

158.414783

Tajima's D

2.514715

CLR

182.755865

CSRT

0.951302434878256

Interpretation

Uncertain