Silkworm Genome Informatics Database

Gene

KWMTBOMO09967

Pre Gene Modal

BGIBMGA013191

Annotation

PREDICTED:_sarcoplasmic_calcium-binding_protein-like_[Plutella_xylostella]

Location

Bomo_Chr16(+):13038757-13061471 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.314 Mitochondrial Reliability : 1.66 Nuclear Reliability : 1.562

CDS

ATGAGATTGGGACTACGTTCCGTGATTAACTTGGAGAAGAGCGCGGGTGTTATGTTTTTACCCAGTGTTAAAATCCAATATAAGTTAATTCACACGAAACCAACGTGCAACGGATCGGTGTGTCACCTGGAAGACAGACCGCGACACGTCAAACGTGAATCGCGGGAGCTCACCGAGTTGCCCCACAGCTCATTAAGACGTTGTTACAGCAAACAGCATGGCCGACCGGAAATAGACAGAAGGAAACAGCCCGATTCGGAATCTGATTCCGACTCTGACACCGAGTGTAAGGGGCTGGACCGGTCTGAGTTCTGGCGCCGCAAGATGCGTACCGTCCACAACATCTTAGACGTGGACAAGGACGGGCTGATCTCGTACAACGACTTCTTGCTGTTCGCTGAAAGGTTCAAGTCTCTCGGCCACCTCGACGCGAAGCAGGCGAAGGAATTCACCGACATCATCAAGATGACATGGGAGCAACAATGGGGCACCATAGACCCGTACAATTTCGTGACGGTGGAACAATACTTGGAGGACATGCATCACGTCCTCAACGACAAGACTCTCAAGAAGAAGGCTCACCGCTGGCTGCCTTATCTATTCAAGGCCGTCGACGCAGATCGCTCCGGTTACATATCGGTCCGTGAGTTCAAGTTGTTCTTTGAATGTCTCGGACTGACGAGCGAGCACGCGGCCGTCGCCTTCGCCGGCATCGACGTTAACGGGGACGGCAAGGTGTCCCTTAAGGAGTTCGTCCAGCTCGGCAAGGAGTTCTTCCACACTGAAGACGAGACCAGAGTCTCCAAGATGTTCTGGGGACCACTCACCGACGTTTAA

Protein

MRLGLRSVINLEKSAGVMFLPSVKIQYKLIHTKPTCNGSVCHLEDRPRHVKRESRELTELPHSSLRRCYSKQHGRPEIDRRKQPDSESDSDSDTECKGLDRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKLFFECLGLTSEHAAVAFAGIDVNGDGKVSLKEFVQLGKEFFHTEDETRVSKMFWGPLTDV

Similarity

Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.

Uniprot

A0A212F211 A0A194PXT3 A0A0N1IDQ6 A0A3S2LFE5 A0A2H1V7S5 A0A2H1V7N6 + More
U5EN96 A0A182FS77 Q175X8 A0A0M4EZU4 A0A034VPG5 A0A0K8UJY4 A0A0A1XIC2 W8B9H3 D2A6F7 N6T224 A0A0K8TXM4

Pubmed

22118469 26354079 17510324 25348373 25830018 24495485 + More
18362917 19820115 23537049

EMBL

AGBW02010784 OWR47785.1 KQ459595 KPI95960.1 KQ460655 KPJ12942.1 + More
RSAL01000158 RVE45531.1 ODYU01001104 SOQ36859.1 ODYU01001103 SOQ36858.1 GANO01000684 JAB59187.1 CH477393 EAT41921.1 CP012528 ALC49792.1 GAKP01014940 JAC44012.1 GDHF01025486 JAI26828.1 GBXI01003163 JAD11129.1 GAMC01011258 JAB95297.1 KQ971347 EFA05506.1 APGK01055159 KB741261 KB631024 KB631053 ENN71558.1 ERL84016.1 ERL84050.1 GDHF01033499 JAI18815.1

Proteomes

UP000007151 UP000053268 UP000053240 UP000283053 UP000069272 UP000008820 + More
UP000092553 UP000007266 UP000019118 UP000030742

Pfam

PF13202   EF-hand_5        + More
PF13499   EF-hand_7
PF13833   EF-hand_8
PF00001   7tm_1
PF10168   Nup88

Interpro

IPR002048   EF_hand_dom        + More
IPR011992   EF-hand-dom_pair
IPR018247   EF_Hand_1_Ca_BS
IPR001760   Opsin
IPR017452   GPCR_Rhodpsn_7TM
IPR000276   GPCR_Rhodpsn
IPR027430   Retinal_BS
IPR037700   NUP88/NUP82
IPR001391   Opsin_lateye
IPR019321   Nucleoporin_Nup88
IPR039647   EF_hand_pair_protein_CML-like

SUPFAM

SSF47473 SSF47473

CDD

cd00051 EFh

ProteinModelPortal

A0A212F211 A0A194PXT3 A0A0N1IDQ6 A0A3S2LFE5 A0A2H1V7S5 A0A2H1V7N6 + More
U5EN96 A0A182FS77 Q175X8 A0A0M4EZU4 A0A034VPG5 A0A0K8UJY4 A0A0A1XIC2 W8B9H3 D2A6F7 N6T224 A0A0K8TXM4

PDB

2SCP E-value=3.72704e-24, Score=274

KEGG

101741700 no KO assigned | (RefSeq) sarcoplasmic calcium-binding protein

GO

GO:0005509 GO:0005623 GO:0000056 GO:0017056 GO:0016021 GO:0007601 GO:0009881 GO:0007602 GO:0000055 GO:0004930 GO:0018298 GO:0006139 GO:0008408 GO:0006508 GO:0008233 GO:0005634 GO:0004672 GO:0030677 GO:0016155 GO:0003824

PANTHER

PTHR13257 PTHR10891

Subcellular location

Membrane

Length:

278

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01124

Exp number, first 60 AAs:

0.00195

Total prob of N-in:

0.02671

outside

1 - 278

Pi

25.018032

Theta

152.509986

Tajima's D

1.75863

CLR

0.684557

CSRT

0.833758312084396

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics