Gene

KWMTBOMO09959  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013187

Annotation

PREDICTED:_coiled-coil_domain-containing_protein_42_homolog_[Amyelois_transitella]

Location

Bomo_Chr16(+):12784453-12785527      View in EpiBrowser

Full name

Coiled-coil domain-containing protein 42      

Location in the cell

Cytoplasmic   Reliability : 1.031 Mitochondrial   Reliability : 1.344

CDS

ATGCTAGAGAATGCTCGACAAGAAATAGCCGCTTTAACTGAGGAGAAGAAGCTGTTTATAATGGGCTTAAATAATACCCTGGCTAACTTGAGGTGGCGTTACGACAAAGTGAGAAGCAGAGTTATAAAATGGGAATTGGCTTTGAATCGACTGAAGGAGACCGCAGCCAGGCGTCACGTGGAGCTAAGCCACGTGCGGTCGGCTATATGGAGCCTGTACGTGAAGATATGCAAGCAGAAGGGTCTGGCGGTGGACGCCGGGTCTGAAGACTTTGAACAGCAGCTTGTCGTAATCATGAGAGCGCTGCTGGAGTTGAGGAAGATTTACAAGATCGCTCAACGAAGGTCTAAGGAGAAGTGA

Protein

MLENARQEIAALTEEKKLFIMGLNNTLANLRWRYDKVRSRVIKWELALNRLKETAARRHVELSHVRSAIWSLYVKICKQKGLAVDAGSEDFEQQLVVIMRALLELRKIYKIAQRRSKEK

Description

Required for sperm development.

Similarity

Belongs to the CFAP73 family.

Keywords

Alternative splicing   Coiled coil   Complete proteome   Reference proteome  

Feature

chain  Coiled-coil domain-containing protein 42
splice variant  In isoform 2.

Uniprot

H9JUH4   A0A2A4JMW3   A0A437B4V6   A0A2H1V2J3   A0A0L7KP72   A0A345BEY4   + More
A0A212FJ29   A0A0N1I8U2   A0A0N0P9J1   A0A0L7KNQ8   E9IKW8   E2A441   A0A0J7LA40   A0A026WAN3   E2BZI8   A0A232FJ78   A0A158NZL3   F4WL31   K7IT73   A0A0C9RWS8   A0A154PLF6   A0A067REI3   A0A0L7R271   E0VMP3   A0A310S774   A0A2A3ES67   A0A2P8YAK6   A0A1W4WRU3   A0A0N0BFN6   A0A088AVB1   U4URE0   N6SXK9   D6WII2   U3J8A3   R0J8J0   D2A6C8   K7FBW3   A0A0Q9XH50   B4KKF0   M7AVB3   K7G2F1   A0A1S3H6L6   A0A0M4E3A1   A0A452GWH0   A0A1U7SGB4   A0A402FQ85   A0A452IUE8   A0A0M3QT19   A0A1S3EVX6   A0A3P4S6W5   F6YYU8   A0A2K5RM65   G1KU97   D2CG23   A0A151NVP7   H0V702   Q5SV66-2   A0A091CLZ4   A0A2K6SSP5   R7TT61   A0A3Q1HCX9   A0A2U3Y3J9   A0A3Q7NFS5   A0A2K5DTH5   A0A0M4EAB5   D3ZAZ8   A0A1S2ZPM5   A0A0N8EU61   G1RG69   H0WIV0   M3Y958   A0A340X917   G1NU57   A0A2Y9Q7P7   I3M5L0   A0A2K6EPR2   A0A2U3VT44   A0A3Q7SIR4   A0A341BN94   A0A1U7Q8H2   A0A2Y9LFZ7   Q5SV66   A0A2Y9HFT2   I3LKE9   E2RA03   A0A2K5LV95   A6QQM8   A0A2K6BLF7   A0A2K5YFB8   A0A0D9RDF0   A0A096P2V6   A0A1U7U206   G7PTL6   F7F9T3   L8HV80   F1SSA4   A0A1A6GNW2   A0A452GAT7   W5NV40  

Pubmed

19121390    26227816    29727827    22118469    26354079    21282665    + More
20798317    24508170    30249741    28648823    21347285    21719571    20075255    24845553    20566863    29403074    23537049    18362917    19820115    23749191    17381049    17994087    23624526    28562605    22293439    21993624    16141072    19468303    15489334    26945718    23254933    15057822    15632090    30723633    16341006    22002653    17431167    22751099    20809919   

EMBL

BABH01022680    NWSH01000975    PCG73321.1    RSAL01000158    RVE45540.1    ODYU01000380    + More
SOQ35065.1    JTDY01008078    KOB64754.1    MG816623    AXF48808.1    AGBW02008320    OWR53719.1    KQ460655    KPJ12953.1    KQ459388    KPJ01148.1    JTDY01008358    KOB64604.1    GL764026    EFZ18762.1    GL436526    EFN71807.1    LBMM01000153    KMR04713.1    KK107353    QOIP01000012    EZA52089.1    RLU16291.1    GL451627    EFN78886.1    NNAY01000153    OXU30518.1    ADTU01004724    GL888207    EGI64994.1    AAZX01005794    GBYB01012286    JAG82053.1    KQ434954    KZC12587.1    KK852685    KDR18488.1    KQ414666    KOC64934.1    DS235321    EEB14649.1    KQ766603    OAD53637.1    KZ288192    PBC34354.1    PYGN01000753    PSN41292.1    KQ435794    KOX73611.1    KB632404    ERL95078.1    APGK01052870    KB741216    ENN72499.1    KQ971334    EFA01080.2    ADON01144311    ADON01144312    KB746093    EOA93515.1    KQ971347    EFA04944.2    AGCU01140062    AGCU01140063    AGCU01140064    CH933807    KRG02803.1    EDW11600.1    KB608654    EMP23718.1    AGCU01015702    AGCU01015703    AGCU01015704    CP012523    ALC40266.1    BDOT01000437    GCF58615.1    ALC38143.1    CYRY02046402    VCX42105.1    KQ971309    EFA12335.2    AKHW03001857    KYO40803.1    AAKN02044387    AK079909    AL645644    BX001016    BC138437    BC138438    KN125302    KFO18872.1    AMQN01012202    KB309360    ELT94686.1    ALC40265.1    AABR07029845    CH473948    EDM04814.1    GEBF01002475    JAO01158.1    ADFV01082821    ADFV01082822    AAQR03080508    AAQR03080509    AAQR03080510    AAQR03080511    AEYP01050831    AEYP01050832    AAPE02053659    AGTP01070945    AEMK02000082    DQIR01285533    HDC41011.1    AAEX03003645    BC149908    AQIB01138163    AHZZ02009684    AQIA01026420    AQIA01026421    AQIA01026422    CM001291    EHH57715.1    JSUE03016025    CM001268    EHH24516.1    JH882969    ELR47751.1    DQIR01091591    HDA47067.1    LZPO01078627    OBS67549.1    LWLT01000022    AMGL01018103   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053240    + More
UP000053268    UP000000311    UP000036403    UP000053097    UP000279307    UP000008237    UP000215335    UP000005205    UP000007755    UP000002358    UP000076502    UP000027135    UP000053825    UP000009046    UP000242457    UP000245037    UP000192223    UP000053105    UP000005203    UP000030742    UP000019118    UP000007266    UP000016666    UP000007267    UP000009192    UP000031443    UP000085678    UP000092553    UP000291020    UP000189705    UP000288954    UP000081671    UP000008225    UP000233040    UP000001646    UP000050525    UP000005447    UP000000589    UP000028990    UP000233220    UP000014760    UP000257200    UP000245341    UP000286641    UP000233020    UP000002494    UP000079721    UP000001073    UP000005225    UP000000715    UP000265300    UP000001074    UP000248483    UP000005215    UP000233160    UP000245340    UP000286640    UP000252040    UP000189706    UP000248482    UP000248481    UP000008227    UP000002254    UP000233060    UP000009136    UP000233120    UP000233140    UP000029965    UP000028761    UP000189704    UP000009130    UP000233100    UP000006718    UP000092124    UP000291000    UP000002356   

PRIDE

H9JUH4    Q5SV66    D3ZAZ8    I3LKE9    A6QQM8    F1SSA4    + More

Pfam

PF13863   DUF4200

Interpro

IPR025252   DUF4200       

ProteinModelPortal

H9JUH4   A0A2A4JMW3   A0A437B4V6   A0A2H1V2J3   A0A0L7KP72   A0A345BEY4   + More
A0A212FJ29   A0A0N1I8U2   A0A0N0P9J1   A0A0L7KNQ8   E9IKW8   E2A441   A0A0J7LA40   A0A026WAN3   E2BZI8   A0A232FJ78   A0A158NZL3   F4WL31   K7IT73   A0A0C9RWS8   A0A154PLF6   A0A067REI3   A0A0L7R271   E0VMP3   A0A310S774   A0A2A3ES67   A0A2P8YAK6   A0A1W4WRU3   A0A0N0BFN6   A0A088AVB1   U4URE0   N6SXK9   D6WII2   U3J8A3   R0J8J0   D2A6C8   K7FBW3   A0A0Q9XH50   B4KKF0   M7AVB3   K7G2F1   A0A1S3H6L6   A0A0M4E3A1   A0A452GWH0   A0A1U7SGB4   A0A402FQ85   A0A452IUE8   A0A0M3QT19   A0A1S3EVX6   A0A3P4S6W5   F6YYU8   A0A2K5RM65   G1KU97   D2CG23   A0A151NVP7   H0V702   Q5SV66-2   A0A091CLZ4   A0A2K6SSP5   R7TT61   A0A3Q1HCX9   A0A2U3Y3J9   A0A3Q7NFS5   A0A2K5DTH5   A0A0M4EAB5   D3ZAZ8   A0A1S2ZPM5   A0A0N8EU61   G1RG69   H0WIV0   M3Y958   A0A340X917   G1NU57   A0A2Y9Q7P7   I3M5L0   A0A2K6EPR2   A0A2U3VT44   A0A3Q7SIR4   A0A341BN94   A0A1U7Q8H2   A0A2Y9LFZ7   Q5SV66   A0A2Y9HFT2   I3LKE9   E2RA03   A0A2K5LV95   A6QQM8   A0A2K6BLF7   A0A2K5YFB8   A0A0D9RDF0   A0A096P2V6   A0A1U7U206   G7PTL6   F7F9T3   L8HV80   F1SSA4   A0A1A6GNW2   A0A452GAT7   W5NV40  

KEGG

101742141    no KO assigned | (RefSeq) coiled-coil domain-containing protein 42 homolog

GO

GO:0007286  

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00455999999999999

Exp number, first 60 AAs:

0.00408

Total prob of N-in:

0.39748

outside

1  -  119

 

 

Pi

80.38025

Theta

89.053386

Tajima's D

-0.687425

CLR

14.552481

CSRT

0.203789810509475

Interpretation

Uncertain