Gene

KWMTBOMO09958  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013187

Annotation

PREDICTED:_coiled-coil_domain-containing_protein_42_homolog_[Amyelois_transitella]

Location

Bomo_Chr16(+):12780553-12782160      View in EpiBrowser

Full name

Coiled-coil domain-containing protein 42 homolog      

Location in the cell

Cytoplasmic   Reliability : 2.037

CDS

ATGAAGAAAACAACAAAAGATTTGGCGCCTATTGCTATACCGCACGGTCCACCCGTGGAATGTACGGCGGAATATTTTAAATCGCTGATGGAAAGCTCAAGCATGGTAAAAAAATATCCGATATGGGACGTGGCGCGACCTACCCCTCAAGTGTTGATGGAGCAAGCACGACGTGATTTAATGGAAGCAGAGGAAAAATTGGCCATCAAAAGAGAGGAAGAGAAAAATAACAGAGCTGTGATGAACGGCAAGTGGGAAGAACTGCGCAGTAAGGAGACGCTACTGAAGGAGTCTTTTATAAGTTTTAATAAGTTTATCCGTGAGAATCAAGAAAAACGTGACCGCGCCGAAAGGAAAATGACGGCTGATGCTGAAGTCCTCGAACGGAAGACAAGAGAAACGGACGCTATGAGACTGCGGGTCGCAGAAATGACGGAAGTCAAGGAGTTGATGGAGAAACAAGTCAAAGACTATACGATTTACGAGGTAGAAAGATAG

Protein

MKKTTKDLAPIAIPHGPPVECTAEYFKSLMESSSMVKKYPIWDVARPTPQVLMEQARRDLMEAEEKLAIKREEEKNNRAVMNGKWEELRSKETLLKESFISFNKFIRENQEKRDRAERKMTADAEVLERKTRETDAMRLRVAEMTEVKELMEKQVKDYTIYEVER

Similarity

Belongs to the CFAP73 family.

Keywords

Coiled coil   Complete proteome   Reference proteome  

Feature

chain  Coiled-coil domain-containing protein 42 homolog

Uniprot

H9JUH4   A0A437B4V6   A0A212FJ29   A0A2H1V2J3   A0A2A4JMW3   A0A0N0P9J1   + More
A0A0N1I8U2   A0A0L7KP72   A0A0C9RWS8   E2A441   A0A026WAN3   A0A154PLF6   A0A1W4WRU3   E0VMP3   A0A0L7R271   A0A2J7R7X4   A0A0J7LA40   E2BZI8   E9IKW8   F4WL31   A0A088AVB1   A0A067REI3   A0A0T6AWI7   A0A2A3ES67   A0A158NZL3   A0A232FJ78   K7IT73   A0A310S774   D2A6C8   U4URE0   N6SXK9   V4AKQ2   A0A433TNK8   W5MPN2   A0A2C9K6J4   K1RCS4   D6WII2   A0A1S3H6L6   A0A210Q4L2   C3Z9B5   A0A0B6YGI5   H3AJ91   A9UQN0   A0A1X7V8E3   B3RJM3   A0A369S7T1   H9G9D3   A0A2B4SQU4   A0A448X3Y5   H2Y4L5   V9LA95   H2XRK7   A0A402FQ85   M7B8P7   A0A3Q7V4T3   A0A3M7P2F5   A0A3M6URY7   A0A1W2WBP4   F1PSS9   L1IN79   G1KU97   W4YT46   A0A183R2Y0   H0XM91   A0A3B1K0I7   A0A421GKG4   A0A452GWH0   A0A3R7GPR7   A0A3F2RHB1   V9FZ27   A0A0W8DD09   W2XTX0   W3A3S8   W2P480   A0A081B0V4   W2RHW8   W2HKQ1   A0A0W8D4B3   A0A2K6TLP0   A7S8T5   E4WS25   G5B5G4   A0A0N8EU61   K7G2F1   D0MUJ9   W5KI81   A0A452IUE8   A0A183MZI2   F7DJ33   A0A3B1JSS6  

Pubmed

19121390    22118469    26354079    26227816    20798317    24508170    + More
30249741    20566863    21282665    21719571    24845553    21347285    28648823    20075255    18362917    19820115    23537049    23254933    15562597    22992520    28812685    18563158    9215903    18273011    18719581    30042472    21881562    24402279    12481130    15114417    23624526    30375419    30382153    16341006    23201678    25329095    28562605    17615350    21097902    21993625    17381049    19741609    17495919   

EMBL

BABH01022680    RSAL01000158    RVE45540.1    AGBW02008320    OWR53719.1    ODYU01000380    + More
SOQ35065.1    NWSH01000975    PCG73321.1    KQ459388    KPJ01148.1    KQ460655    KPJ12953.1    JTDY01008078    KOB64754.1    GBYB01012286    JAG82053.1    GL436526    EFN71807.1    KK107353    QOIP01000012    EZA52089.1    RLU16291.1    KQ434954    KZC12587.1    DS235321    EEB14649.1    KQ414666    KOC64934.1    NEVH01006723    PNF36935.1    LBMM01000153    KMR04713.1    GL451627    EFN78886.1    GL764026    EFZ18762.1    GL888207    EGI64994.1    KK852685    KDR18488.1    LJIG01022654    KRT79425.1    KZ288192    PBC34354.1    ADTU01004724    NNAY01000153    OXU30518.1    AAZX01005794    KQ766603    OAD53637.1    KQ971347    EFA04944.2    KB632404    ERL95078.1    APGK01052870    KB741216    ENN72499.1    KB201304    ESO97697.1    RQTK01000255    RUS83165.1    AHAT01005288    JH816130    EKC39050.1    KQ971334    EFA01080.2    NEDP02005031    OWF43676.1    GG666599    EEN50844.1    HACG01007760    CEK54625.1    AFYH01161643    AFYH01161644    AFYH01161645    CH991543    DS985241    EDV28519.1    NOWV01000047    RDD42880.1    AAWZ02025424    LSMT01000032    PFX31736.1    CAAALY010086701    VEL27357.1    JW876463    AFP08980.1    EAAA01000834    BDOT01000437    GCF58615.1    KB532800    EMP34306.1    REGN01013955    RMZ93256.1    RCHS01000867    RMX56324.1    AAEX03014686    JH993061    EKX37255.1    AAGJ04155216    AAQR03070951    MAYM02000115    MBDN02000227    RLN45895.1    RLN77772.1    MBAD02000423    RLN68047.1    MBDO02000341    RLN56816.1    ANIZ01000206    ETI56028.1    LNFO01001177    KUF94196.1    ANIX01000268    ETP25828.1    ANIY01000235    ETP53841.1    KI670663    KI677453    KI690688    ETL49209.1    ETM02227.1    ETM55505.1    ANJA01000240    ETO84765.1    KI669561    ETN25023.1    KI684193    ETK95823.1    LNFP01000620    KUF91077.1    DS469599    FN653015    FN654454    CBY20557.1    CBY33867.1    JH168588    EHB04525.1    GEBF01002475    JAO01158.1    AGCU01015702    AGCU01015703    AGCU01015704    DS028119    EEY61646.1    UZAI01018714    VDP39606.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000218220    UP000053268    UP000053240    + More
UP000037510    UP000000311    UP000053097    UP000279307    UP000076502    UP000192223    UP000009046    UP000053825    UP000235965    UP000036403    UP000008237    UP000007755    UP000005203    UP000027135    UP000242457    UP000005205    UP000215335    UP000002358    UP000007266    UP000030742    UP000019118    UP000030746    UP000271974    UP000018468    UP000076420    UP000005408    UP000085678    UP000242188    UP000001554    UP000008672    UP000001357    UP000007879    UP000009022    UP000253843    UP000001646    UP000225706    UP000007875    UP000008144    UP000288954    UP000031443    UP000286640    UP000276133    UP000275408    UP000002254    UP000011087    UP000007110    UP000050792    UP000005225    UP000018467    UP000285624    UP000285883    UP000291020    UP000284657    UP000277300    UP000018721    UP000052943    UP000018958    UP000018948    UP000053864    UP000054423    UP000054532    UP000028582    UP000018817    UP000053236    UP000233220    UP000001593    UP000006813    UP000007267    UP000006643    UP000050790    UP000277204    UP000002280   

PRIDE

H9JUH4   

Pfam

PF13863   DUF4200        + More
PF00752   XPG_N

Interpro

IPR025252   DUF4200        + More
IPR006085   XPG_DNA_repair_N       

ProteinModelPortal

H9JUH4   A0A437B4V6   A0A212FJ29   A0A2H1V2J3   A0A2A4JMW3   A0A0N0P9J1   + More
A0A0N1I8U2   A0A0L7KP72   A0A0C9RWS8   E2A441   A0A026WAN3   A0A154PLF6   A0A1W4WRU3   E0VMP3   A0A0L7R271   A0A2J7R7X4   A0A0J7LA40   E2BZI8   E9IKW8   F4WL31   A0A088AVB1   A0A067REI3   A0A0T6AWI7   A0A2A3ES67   A0A158NZL3   A0A232FJ78   K7IT73   A0A310S774   D2A6C8   U4URE0   N6SXK9   V4AKQ2   A0A433TNK8   W5MPN2   A0A2C9K6J4   K1RCS4   D6WII2   A0A1S3H6L6   A0A210Q4L2   C3Z9B5   A0A0B6YGI5   H3AJ91   A9UQN0   A0A1X7V8E3   B3RJM3   A0A369S7T1   H9G9D3   A0A2B4SQU4   A0A448X3Y5   H2Y4L5   V9LA95   H2XRK7   A0A402FQ85   M7B8P7   A0A3Q7V4T3   A0A3M7P2F5   A0A3M6URY7   A0A1W2WBP4   F1PSS9   L1IN79   G1KU97   W4YT46   A0A183R2Y0   H0XM91   A0A3B1K0I7   A0A421GKG4   A0A452GWH0   A0A3R7GPR7   A0A3F2RHB1   V9FZ27   A0A0W8DD09   W2XTX0   W3A3S8   W2P480   A0A081B0V4   W2RHW8   W2HKQ1   A0A0W8D4B3   A0A2K6TLP0   A7S8T5   E4WS25   G5B5G4   A0A0N8EU61   K7G2F1   D0MUJ9   W5KI81   A0A452IUE8   A0A183MZI2   F7DJ33   A0A3B1JSS6  

KEGG

101742141    no KO assigned | (RefSeq) coiled-coil domain-containing protein 42 homolog

GO

GO:0016021   GO:0031514   GO:0007286   GO:0004518   GO:0006281  

Length:

165

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.32853

outside

1  -  165

 

 

Pi

174.88634

Theta

150.102784

Tajima's D

0.940783

CLR

0.162999

CSRT

0.64076796160192

Interpretation

Uncertain