Gene

KWMTBOMO09915

Pre Gene Modal

BGIBMGA013169

Annotation

PREDICTED:_ribonuclease_P_protein_subunit_p29_[Plutella_xylostella]

Location

Bomo_Chr16(+):12021454-12022241      View in EpiBrowser

Full name

Ribonuclease P protein subunit p29       + More
Ribonuclease P protein subunit      

Location in the cell

Nuclear   Reliability : 2.783

CDS

ATGGAGGAAACGACAGATTCATTCAATCAACAGGCTGCAAATTCAATCATTAATTTCCTCAAAACAAATGTTCCTAAAAACGAGGTCCAAAAAATTGATTCGGAATTAAAAACCGAACTCGTTTTTGCGAAAAAGCGCAGCAAGCAACAAAAACGTAAACCAATCAAGAAAAAAACCAGATGTTTGACTCGTAAAGAGAAAAAAACACTTGGATTTTACAATATTCCACGACACAGCGTGAAGTACGAGGACGTAGTACAGATGAACAAAATTTGGTTAGAATATATTACTGAAGTCCTAGCGATGGACGAGGGTGTACCAGAGCCAAATAGTAAAAATTGGGAAACGTTAACCTTAAGTTTGTATAAAGCGGACTATCATGGATCCATGTTAACGGTAGTCCGTTCCAAATGTCCAAGCTTTATCAATAAAACCGGAATATGCATTATGGATACAAAGAACACTTTTAAAATTGTCTCCAAAGATAATATTGTGACAACTATACCTAAAAAAGAATGTGTATTCGAATTGTATTTGAAAAAATTCAAAGTTACATTATTTGGGAAGCTGCTGTGTGCAAAACCAGCTGAACGCTCTACAAAGAAAGTCAAAGGACACTTGCATCCTGATTTATGA

Protein

MEETTDSFNQQAANSIINFLKTNVPKNEVQKIDSELKTELVFAKKRSKQQKRKPIKKKTRCLTRKEKKTLGFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDEGVPEPNSKNWETLTLSLYKADYHGSMLTVVRSKCPSFINKTGICIMDTKNTFKIVSKDNIVTTIPKKECVFELYLKKFKVTLFGKLLCAKPAERSTKKVKGHLHPDL

Description

Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Catalytic Activity

Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

Subunit

Component of nuclear RNase P and RNase MRP.

Uniprot

H9JUF6   A0A2H1V9R8   A0A2W1BI82   A0A2A4IWV8   A0A0L7KZ96   A0A194PPV7   + More
S4NXK0   A0A1E1VY02   A0A1B6IDK7   W5JC31   A0A2M4AZ71   A0A212F261   A0A232F894   R4V2I7   K7ITB0   A0A182FPM5   E0VK17   A0A067RRN4   A0A182R4H1   A0A182TUD1   A0A2A3EI40   A0A182KAQ1   A0A1S4H7E4   A0A182L4H1   A0A088AFU2   B4KUP9   A0A0M4EHZ6   A0A1Y9GL13   A0A1B6CB12   B4LHS7   A0A182VMZ8   A0A1I8N0Q0   A0A2J7QH47   A0A310SCR9   A0A1I8PSF8   A0A182QYR2   A0A182M0A9   A0A151IQ03   A0A182XKR3   B4N5J2   B4J103   A0A3B0JXZ9   A0A182PC54   B3MN21   A0A151XCT4   A0A154PN76   W8C1J7   A0A182WEF0   A0A0L0CL05   Q29EQ2   A0A069DPA2   A0A182J9W7   A0A158NC68   B4PCD4   A0A1W4VND0   Q8MSA7   B4HIY0   C4XVM6   Q9VSC6   A0A182MXV6   A0A0J9RRC6   B4QKZ4   F4WYV8   A0A0P4VPV2   T1IDK3   J3JUL4   B3NF70   U4UXG0   J9M4K8   A0A1B0AZ13   A0A139WGK6   A0A1B0FJI5   A0A0L7RE92   A0A2T9YP26   E9ILW3   A0A2H8TZ42   A0A1A9Y1A0   A0A0P6DIZ5   A0A1A9WBS1   A0A0N8CW92   A0A0P5INU9   A0A151HZZ4   A0A1A9ZWK0   C4WY33   A0A1J1I6M4  

EC Number

3.1.26.5

Pubmed

19121390    28756777    26227816    26354079    23622113    20920257    + More
23761445    22118469    28648823    20075255    20566863    24845553    12364791    20966253    17994087    25315136    24495485    26108605    15632085    23185243    26334808    21347285    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    21719571    27129103    22516182    23537049    18362917    19820115    29764946    21282665   

EMBL

BABH01022754    ODYU01001161    SOQ36984.1    KZ150106    PZC73414.1    NWSH01005088    + More
PCG64447.1    JTDY01004241    KOB68401.1    KQ459602    KPI93165.1    GAIX01014165    JAA78395.1    GDQN01011431    JAT79623.1    GECU01022714    JAS84992.1    ADMH02001635    ETN61671.1    GGFK01012770    MBW46091.1    AGBW02010783    OWR47811.1    NNAY01000676    OXU27061.1    KC741128    AGM32952.1    AAZX01005762    DS235237    EEB13723.1    KK852507    KDR22434.1    KZ288254    PBC30869.1    AAAB01008986    CH933809    EDW18277.1    CP012525    ALC43401.1    APCN01002375    GEDC01026645    JAS10653.1    CH940647    EDW70652.1    NEVH01014358    PNF27908.1    KQ777347    OAD52117.1    AXCN02002115    AXCM01005277    KQ976796    KYN08244.1    CH964101    EDW79631.1    CH916366    EDV96858.1    OUUW01000012    SPP86947.1    CH902620    EDV31999.1    KQ982298    KYQ58167.1    KQ434973    KZC12768.1    GAMC01000888    JAC05668.1    JRES01000254    KNC32931.1    CH379070    EAL30008.2    GBGD01003026    JAC85863.1    ADTU01011669    CM000159    EDW93819.1    AY118967    AAM50827.1    CH480815    EDW40634.1    BT088830    ACS44723.1    AE014296    AAF50498.1    CM002912    KMY98257.1    CM000363    EDX09627.1    GL888463    EGI60612.1    GDKW01002768    JAI53827.1    ACPB03002185    BT126929    AEE61891.1    CH954178    EDV50412.1    KB632404    ERL95031.1    ABLF02032474    JXJN01006110    KQ971345    KYB27036.1    CCAG010004434    KQ414609    KOC69292.1    MBFR01000101    PVU94103.1    GL764129    EFZ18523.1    GFXV01006997    MBW18802.1    GDIQ01076413    JAN18324.1    GDIQ01127155    GDIP01092711    LRGB01003216    JAL24571.1    JAM11004.1    KZS03734.1    GDIQ01212567    GDIQ01083818    GDIQ01044737    JAK39158.1    KQ976642    KYM78666.1    AK342997    BAH72803.1    CVRI01000043    CRK95912.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000000673    UP000007151    + More
UP000215335    UP000002358    UP000069272    UP000009046    UP000027135    UP000075900    UP000075902    UP000242457    UP000075881    UP000075882    UP000005203    UP000009192    UP000092553    UP000075840    UP000008792    UP000075903    UP000095301    UP000235965    UP000095300    UP000075886    UP000075883    UP000078542    UP000076407    UP000007798    UP000001070    UP000268350    UP000075885    UP000007801    UP000075809    UP000076502    UP000075920    UP000037069    UP000001819    UP000075880    UP000005205    UP000002282    UP000192221    UP000001292    UP000000803    UP000075884    UP000000304    UP000007755    UP000015103    UP000008711    UP000030742    UP000007819    UP000092460    UP000007266    UP000092444    UP000053825    UP000245383    UP000092443    UP000091820    UP000076858    UP000078540    UP000092445    UP000183832   

PRIDE

H9JUF6    Q8MSA7    Q9VSC6   

Pfam

PF01868   UPF0086

Interpro

IPR023534   Rof/RNase_P-like        + More
IPR036980   RNase_P/MRP_p29_sf       
IPR016848   RNase_P/MRP_p29-subunit       
IPR002730   RNase_P/MRP_p29       
IPR023538   RNP1       
IPR016024   ARM-type_fold       

SUPFAM

SSF101744   SSF101744        + More
SSF48371   SSF48371       

Gene 3D

2.30.30.210    

ProteinModelPortal

H9JUF6   A0A2H1V9R8   A0A2W1BI82   A0A2A4IWV8   A0A0L7KZ96   A0A194PPV7   + More
S4NXK0   A0A1E1VY02   A0A1B6IDK7   W5JC31   A0A2M4AZ71   A0A212F261   A0A232F894   R4V2I7   K7ITB0   A0A182FPM5   E0VK17   A0A067RRN4   A0A182R4H1   A0A182TUD1   A0A2A3EI40   A0A182KAQ1   A0A1S4H7E4   A0A182L4H1   A0A088AFU2   B4KUP9   A0A0M4EHZ6   A0A1Y9GL13   A0A1B6CB12   B4LHS7   A0A182VMZ8   A0A1I8N0Q0   A0A2J7QH47   A0A310SCR9   A0A1I8PSF8   A0A182QYR2   A0A182M0A9   A0A151IQ03   A0A182XKR3   B4N5J2   B4J103   A0A3B0JXZ9   A0A182PC54   B3MN21   A0A151XCT4   A0A154PN76   W8C1J7   A0A182WEF0   A0A0L0CL05   Q29EQ2   A0A069DPA2   A0A182J9W7   A0A158NC68   B4PCD4   A0A1W4VND0   Q8MSA7   B4HIY0   C4XVM6   Q9VSC6   A0A182MXV6   A0A0J9RRC6   B4QKZ4   F4WYV8   A0A0P4VPV2   T1IDK3   J3JUL4   B3NF70   U4UXG0   J9M4K8   A0A1B0AZ13   A0A139WGK6   A0A1B0FJI5   A0A0L7RE92   A0A2T9YP26   E9ILW3   A0A2H8TZ42   A0A1A9Y1A0   A0A0P6DIZ5   A0A1A9WBS1   A0A0N8CW92   A0A0P5INU9   A0A151HZZ4   A0A1A9ZWK0   C4WY33   A0A1J1I6M4  

PDB

6AHU     E-value=4.68776e-18,     Score=220

KEGG

101743768    K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] | (RefSeq) ribonuclease P protein subunit p

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0004526   GO:0030677   GO:0008033   GO:0003723   GO:0005730   GO:0001682   GO:0004540   GO:0042134   GO:0030681   GO:0005655   GO:0006364   GO:0000172   GO:0033204   GO:0005634   GO:0006379   GO:0016155   GO:0003824   GO:0006396  

Subcellular location

  

Length:

211

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000440000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10450

outside

1  -  211

 

 

Pi

42.914025

Theta

52.872327

Tajima's D

-0.395792

CLR

2.505172

CSRT

0.266736663166842

Interpretation

Uncertain