Gene

KWMTBOMO09911

Pre Gene Modal

BGIBMGA013255

Annotation

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1-A_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr16(-):11949603-11961543      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.899

CDS

ATGGCCTTACGTACGTACGGCGATAAGCCGATAAGTTTTCAAATCGAAGAAGGAGGAGACTTTTATTGTGTTGGCTCAGAGGTCGGGAATTACCTGCGCTTGTTCCGTGGGTCACTCTACAAGAAGTACCCTGGCATGTGCCGGCGTACCCTCACCAATGAAGAACGTAAGCGATTAATTGACAACGGTCTTGGTCCTCATGTGCTGTCCAGTTCAGTTTCACTGTTGAAGGCGTCAGAAGTTGAAGACATTATTGAAGGGAATGATGATAAATACAAAGCAGTGTCCGTCAGCCAAGAGTTGGCGACACCCCGTGAGAGCAAAAGCAAGAAGCCACACACTCCATCATGGCTGCCAGTCATGCCAAACTCTTCTCATTTGGATGCTGTACCCCAGGCTACTCCAATCAGCAGGAGTAGGGTGCATAATAAGAAGGTGAGAACATTCCCACTGTGTTTCGATGACACAGACATGACTGCAATGCTGGAGAATGCTTCGCAAAAGCAGGTGCTTGTACCGATTCGATTGGACATGGAGATTGAGGGTCAAAAACTCAGGGATACATTTACATGGAATAAAAATGAATCAATAATAACACCAGAACAGTTTGCCGAGGTGCTGTGCGATGATTTAGAGTTGAACACGAGCACCTTCATACCTGCTGTGGCCTCCTCGATCCGGCAACAGATCGATGCCTTCCCGAGCGAGCCTCCCCCCATACTGGAGGAGCATACCGACCAGAGGGTCCTCGTCAAACTCAATATACACGTTGGAAACACTTCGTTGGTAGATCAGGTGGAGTGGGACATGGCCGAGAAGGAGAACAACCCGGAGCAGTTCGCGATGAAGCTGTGCTCGGAGCTGGGCCTCGGCGGGGAGTTCGTGACCGGCATCGCGTACTCCGTGCGCGGGCAGCTCGGCTGGCACCAGCGGACCTACGCCTTCAGCGAGGCGCCCCTACCCGTGGTCGAGACGCCGTACCGCGTCCCGTCGGAGGCCGAGCAGTGGGCCCCGCACCTCGAGACCCTCACCAACGCGGAGATGGAGAAGAAGATCCGGGACCAGGACCGGAACACCAGGCGCATGCGGAGGCTCGCCAACACCGCGCCCGATGTGTCTTTGAGTCGCGCAGTCAACCGGCTGATCAGAGCTGACGAAGCACTGTTCCCGTCCACCCCGGAAAAGCGAAGAAAAAAGATATAA

Protein

MALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNGLGPHVLSSSVSLLKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIPAVASSIRQQIDAFPSEPPPILEEHTDQRVLVKLNIHVGNTSLVDQVEWDMAEKENNPEQFAMKLCSELGLGGEFVTGIAYSVRGQLGWHQRTYAFSEAPLPVVETPYRVPSEAEQWAPHLETLTNAEMEKKIRDQDRNTRRMRRLANTAPDVSLSRAVNRLIRADEALFPSTPEKRRKKI

Similarity

Belongs to the SNF5 family.

Uniprot

A0A3S2LN14   A0A194PJG0   A0A2H1V844   S4P996   A0A212F237   H9JUP2   + More
A0A2W1BJH8   A0A0N1IGL9   A0A026W2P9   A0A151J937   A0A195CBG5   E9J8K5   F4X888   A0A195BG33   A0A0J7L4E0   A0A195FDD4   A0A158NBU7   E2ACH7   A0A151X9S5   E2BIE4   K7IZ56   A0A154P8C2   A0A0M9A1C1   A0A2A3ESG5   V9ILP6   A0A088AH82   A0A1L8DWW0   A0A0C9R9F5   A0A232EUG9   A0A0L7QWF2   A0A2M3ZIF5   A0A2M4AP82   A0A2M4BRJ2   W5J9Z9   A0A182FS92   A0A182QKJ4   A0A1B0DG90   A0A182MRL7   A0A182RFZ1   A0A182YND5   A0A182JT92   A0A182PR88   A0A182VW67   A0A182V9R0   Q7PUT1   A0A182HK49   A0A1W4WLL1   A0A067QTD8   A0A347ZJB3   A0A1W4WWD3   A0A1B6F4F6   A0A1B6JMY0   A0A084W0I9   A0A1B6HS75   A0A1B6LS68   A0A1B6KLN7   J3JTD4   A0A182JE89   A0A182NQY5   D2A622   A0A182TNU2   U4U0D9   A0A2J7QH19   U5ELY9   A0A1Y1K883   A0A1Q3EY24   A0A0T6AWJ3   A0A182GKV8   N6SWY7   A0A0L0BUE9   B0WP88   A0A1S4F7F7   Q17D09   R4QPV6   A0A2R7X529   A0A224XE56   A0A0N7Z9F1   A0A0V0G6H6   A0A023F5T7   A0A2S2NY76   T1I138   A0A069DUV3   W8BU58   A0A1I8NWF5   A0A2S2QZ90   A0A1I8MI70   A0A0K8WF35   A0A034WNW4   J9K0K9   A0A2H8TFS0   A0A1J1ISV8   A0A336KQX1   A0A1S4EHV6   B4JHV6   A0A2P8ZK51   E0VHZ0   B4LZC1   B4KD96   A0A3B0KF71   B5DXY5  

Pubmed

26354079    23622113    22118469    19121390    28756777    24508170    + More
30249741    21282665    21719571    21347285    20798317    20075255    28648823    20920257    23761445    25244985    12364791    14747013    17210077    24845553    24438588    22516182    18362917    19820115    23537049    28004739    26483478    26108605    17510324    25392228    27129103    25474469    26334808    24495485    25315136    25348373    17994087    29403074    20566863    15632085   

EMBL

RSAL01000051    RVE50214.1    KQ459602    KPI93173.1    ODYU01001161    SOQ36987.1    + More
GAIX01005601    JAA86959.1    AGBW02010783    OWR47808.1    BABH01022762    KZ150106    PZC73417.1    KQ460773    KPJ12433.1    KK107459    QOIP01000004    EZA50360.1    RLU23612.1    KQ979433    KYN21578.1    KQ978068    KYM97546.1    GL769034    EFZ10853.1    GL888932    EGI57164.1    KQ976500    KYM83164.1    LBMM01000857    KMQ97359.1    KQ981673    KYN38391.1    ADTU01011328    GL438525    EFN68863.1    KQ982373    KYQ57038.1    GL448504    EFN84532.1    KQ434827    KZC07594.1    KQ435794    KOX73883.1    KZ288189    PBC34640.1    JR051830    AEY61567.1    GFDF01003127    JAV10957.1    GBYB01009547    JAG79314.1    NNAY01002138    OXU21957.1    KQ414713    KOC62958.1    GGFM01007504    MBW28255.1    GGFK01009221    MBW42542.1    GGFJ01006566    MBW55707.1    ADMH02002066    ETN59680.1    AXCN02001485    AJVK01033600    AXCM01000964    AAAB01008987    EAA01058.2    APCN01000816    KK853042    KDR12165.1    FX985681    BBA84419.1    GECZ01025016    JAS44753.1    GECU01007274    JAT00433.1    ATLV01019122    KE525262    KFB43733.1    GECU01030211    JAS77495.1    GEBQ01031625    GEBQ01013472    JAT08352.1    JAT26505.1    GEBQ01027853    GEBQ01004753    JAT12124.1    JAT35224.1    BT126490    AEE61454.1    KQ971346    EFA05453.1    KB631749    ERL85763.1    NEVH01014358    PNF27877.1    GANO01001222    JAB58649.1    GEZM01092876    JAV56430.1    GFDL01014842    JAV20203.1    LJIG01022739    KRT78967.1    JXUM01070726    KQ562623    KXJ75470.1    APGK01053516    KB741224    ENN72304.1    JRES01001304    KNC23700.1    DS232020    EDS32133.1    CH477301    EAT44250.1    KC576842    AGL76706.1    KK856874    PTY26520.1    GFTR01005689    JAW10737.1    GDKW01000723    JAI55872.1    GECL01002444    JAP03680.1    GBBI01002174    JAC16538.1    GGMR01009516    MBY22135.1    ACPB03016231    GBGD01001422    JAC87467.1    GAMC01001660    JAC04896.1    GGMS01013790    MBY82993.1    GDHF01002551    JAI49763.1    GAKP01002920    JAC56032.1    ABLF02035782    GFXV01001085    MBW12890.1    CVRI01000057    CRL02190.1    UFQS01000739    UFQT01000739    SSX06492.1    SSX26841.1    CH916369    EDV92864.1    PYGN01000033    PSN56850.1    AAZO01002497    DS235172    EEB12996.1    CH940650    EDW68156.1    CH933806    EDW14878.1    OUUW01000008    SPP84366.1    CM000070    EDY68306.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000005204    UP000053240    UP000053097    + More
UP000279307    UP000078492    UP000078542    UP000007755    UP000078540    UP000036403    UP000078541    UP000005205    UP000000311    UP000075809    UP000008237    UP000002358    UP000076502    UP000053105    UP000242457    UP000005203    UP000215335    UP000053825    UP000000673    UP000069272    UP000075886    UP000092462    UP000075883    UP000075900    UP000076408    UP000075881    UP000075885    UP000075920    UP000075903    UP000007062    UP000075840    UP000192223    UP000027135    UP000030765    UP000075880    UP000075884    UP000007266    UP000075902    UP000030742    UP000235965    UP000069940    UP000249989    UP000019118    UP000037069    UP000002320    UP000008820    UP000015103    UP000095300    UP000095301    UP000007819    UP000183832    UP000079169    UP000001070    UP000245037    UP000009046    UP000008792    UP000009192    UP000268350    UP000001819   

PRIDE

H9JUP2   

Pfam

PF04855   SNF5        + More
PF03029   ATP_bind_1

Interpro

IPR017393   Sfh1/SNF5        + More
IPR006939   SNF5       
IPR004130   Gpn       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A3S2LN14   A0A194PJG0   A0A2H1V844   S4P996   A0A212F237   H9JUP2   + More
A0A2W1BJH8   A0A0N1IGL9   A0A026W2P9   A0A151J937   A0A195CBG5   E9J8K5   F4X888   A0A195BG33   A0A0J7L4E0   A0A195FDD4   A0A158NBU7   E2ACH7   A0A151X9S5   E2BIE4   K7IZ56   A0A154P8C2   A0A0M9A1C1   A0A2A3ESG5   V9ILP6   A0A088AH82   A0A1L8DWW0   A0A0C9R9F5   A0A232EUG9   A0A0L7QWF2   A0A2M3ZIF5   A0A2M4AP82   A0A2M4BRJ2   W5J9Z9   A0A182FS92   A0A182QKJ4   A0A1B0DG90   A0A182MRL7   A0A182RFZ1   A0A182YND5   A0A182JT92   A0A182PR88   A0A182VW67   A0A182V9R0   Q7PUT1   A0A182HK49   A0A1W4WLL1   A0A067QTD8   A0A347ZJB3   A0A1W4WWD3   A0A1B6F4F6   A0A1B6JMY0   A0A084W0I9   A0A1B6HS75   A0A1B6LS68   A0A1B6KLN7   J3JTD4   A0A182JE89   A0A182NQY5   D2A622   A0A182TNU2   U4U0D9   A0A2J7QH19   U5ELY9   A0A1Y1K883   A0A1Q3EY24   A0A0T6AWJ3   A0A182GKV8   N6SWY7   A0A0L0BUE9   B0WP88   A0A1S4F7F7   Q17D09   R4QPV6   A0A2R7X529   A0A224XE56   A0A0N7Z9F1   A0A0V0G6H6   A0A023F5T7   A0A2S2NY76   T1I138   A0A069DUV3   W8BU58   A0A1I8NWF5   A0A2S2QZ90   A0A1I8MI70   A0A0K8WF35   A0A034WNW4   J9K0K9   A0A2H8TFS0   A0A1J1ISV8   A0A336KQX1   A0A1S4EHV6   B4JHV6   A0A2P8ZK51   E0VHZ0   B4LZC1   B4KD96   A0A3B0KF71   B5DXY5  

PDB

6AX5     E-value=8.00924e-27,     Score=299

KEGG

101744352    K11648 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

GO

GO:0005634   GO:0000228   GO:0006338   GO:0035060   GO:0006337   GO:0071565   GO:0071564   GO:0006357   GO:0003713   GO:0016514   GO:0016021   GO:0004386   GO:0097150   GO:0016586   GO:0008586   GO:0045893   GO:0008587   GO:0007474   GO:0070984   GO:0070983   GO:0043697   GO:0007406   GO:0030957   GO:0016020   GO:0015074   GO:0006414   GO:0004816   GO:0005737   GO:0006421   GO:0016155   GO:0003824  

PANTHER

PTHR10019  

Subcellular location

Nucleus  

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01679

Exp number, first 60 AAs:

0.00241

Total prob of N-in:

0.02805

outside

1  -  400

 

 

Pi

24.801457

Theta

206.332899

Tajima's D

-1.169162

CLR

1.390555

CSRT

0.110044497775111

Interpretation

Uncertain