Gene

KWMTBOMO09902

Pre Gene Modal

BGIBMGA013166

Annotation

PREDICTED:_histone_deacetylase_3_[Bombyx_mori]

Location

Bomo_Chr16(+):11534524-11535837      View in EpiBrowser

Full name

Histone deacetylase      

Location in the cell

Cytoplasmic   Reliability : 1.218 Nuclear   Reliability : 1.798

CDS

ATGTGTCAACACTCGCCCGCAGTACAAATGACTCATATACCAGGTGACTTCTTCCCTGAAGATTACCGAATCAAGGACGAACCCGATCCTGACGTTCGTATCAGTCAGGACGATGCTGACAAAATGGTGGAGCCCAAAAACGAGTTTTACGAAGACGAGAAAGATAACGATAAGGAGTTGCCACCAGAGATTAAGGATCCATAG

Protein

MCQHSPAVQMTHIPGDFFPEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP

Catalytic Activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.

Similarity

Belongs to the histone deacetylase family. HD Type 1 subfamily.
Belongs to the 14-3-3 family.

Uniprot

H9JUF3   A0A1E1WCE1   S4PV06   A0A2A4JPL6   A0A0B5WYL7   A0A2H1X2Q6   + More
A0A437B1G7   A0A194PIE2   A0A212F234   A0A182VW75   A0A1L8DWY8   A0A1B0GIB0   A0A0N1I504   Q16QZ8   B0X1P4   A0A084W0K0   A0A023ERM0   A0A2M4BNS3   A0A1Y1K2Q7   A0A182HBL8   A0A2M3Z9Z7   A0A2M4ANK6   A0A182FSA0   W5J5F1   J3JTY3   A0A0A1WJN1   A0A2P8Y1E2   A0A0K8UZB8   A0A1L7N252   A0A0K8U3E5   A0A034WQK0   A0A336LLV5   W8CA23   A0A067R7R1   A0A182NQZ5   A0A1Q3F463   D6WYS7   A0A182QSK7   B4KD95   A0A182MEP8   B4LZC0   A0A182RG01   A0A182YNC5   A0A182SHD5   A0A182VGB9   A0A182TF68   A0A182L8D0   Q7PX00   A0A182HK42   A0A182XNZ7   A0A182PR77   A0A1A9XU26   A0A1A9VPK8   A0A1B0AVG5   A0A1A9ZJP7   A0A182JRG3   A0A2J7R7Y7   A0A1W4XTM3   B4JHV5   A0A3B0JQ91   B5DXY4   B4GF88   U5EVN6   A0A1B0GCY1   A0A0M5J4Z4   E0VKD4   A0A182IW81   A0A0L0BUJ3   B3LZH6   A0A0K8SU87   B4NB88   A0A1W4UJ00   A0A0A9WDV4   A0A2R7VRL2   Q7KTS4   Q9VNC2   B4PVA5   A0A1I8N7M5   B4QWW2   A0A2C9JHC5   B4I409   B3P2E0   A0A2R7VZD4   A0A2S2PJD5   T1GKI2   A0A1I8Q9N9   A0A3S1B0G7   A0A2T7NP68   A0A3R7T0P5   A0A3Q8Q043   A0A0C9R9J6   A0A2H8TMX3   J9KAR8   A0A0L8GDC4   A0A0B6YR45   A0A0D2WXJ4   A0A1B6GV27   A0A1B6JL65   A0A069DUM6   A0A210QF79  

EC Number

3.5.1.98

Pubmed

19121390    23622113    28756777    26354079    22118469    17510324    + More
24438588    24945155    28004739    26483478    20920257    23761445    22516182    23537049    25830018    29403074    27956627    25348373    24495485    24845553    18362917    19820115    17994087    18057021    25244985    20966253    12364791    14747013    17210077    15632085    20566863    26108605    25401762    26823975    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    9852957    17550304    25315136    15562597    26334808    28812685   

EMBL

BABH01022812    GDQN01006404    JAT84650.1    GAIX01009373    JAA83187.1    NWSH01000876    + More
PCG73759.1    KM983338    KZ150072    AJH76982.1    PZC74020.1    ODYU01013000    SOQ59595.1    RSAL01000212    RVE44174.1    KQ459602    KPI93181.1    AGBW02010783    OWR47805.1    GFDF01003121    JAV10963.1    AJWK01013622    AJWK01013623    KQ461178    KPJ07782.1    CH477727    EAT36822.1    DS232266    EDS38772.1    ATLV01019122    KE525262    KFB43744.1    GAPW01002272    JAC11326.1    GGFJ01005521    MBW54662.1    GEZM01098405    GEZM01098404    JAV53895.1    JXUM01125249    KQ566924    KXJ69730.1    GGFM01004590    MBW25341.1    GGFK01009055    MBW42376.1    ADMH02002066    ETN59692.1    APGK01019092    BT126693    KB740092    KB632429    AEE61655.1    ENN81439.1    ERL95457.1    GBXI01015572    JAC98719.1    PYGN01001050    PSN38082.1    GDHF01020310    GDHF01018819    JAI32004.1    JAI33495.1    LC096258    BAW19562.1    GDHF01031268    JAI21046.1    GAKP01002919    JAC56033.1    UFQT01000046    SSX18880.1    GAMC01001659    JAC04897.1    KK852685    KDR18505.1    KDR18506.1    GFDL01012701    JAV22344.1    KQ971357    EFA08457.1    AXCN02001485    CH933806    EDW14877.1    KRG01258.1    AXCM01000085    CH940650    EDW68155.1    AAAB01008987    EAA01056.5    APCN01000816    JXJN01004246    NEVH01006723    PNF36945.1    CH916369    EDV92863.1    OUUW01000008    SPP84367.1    CM000070    EDY68305.1    CH479182    EDW34273.1    GANO01001798    JAB58073.1    CCAG010002244    CP012526    ALC46648.1    DS235242    EEB13840.1    JRES01001304    KNC23745.1    CH902617    EDV41918.1    KPU79435.1    GBRD01008944    JAG56877.1    CH964232    EDW81052.1    GBHO01037002    GDHC01018870    JAG06602.1    JAP99758.1    KK854012    PTY09310.1    AE014297    AY061321    JQ663528    AAF52023.1    AAL28869.1    AFI26263.1    AF071559    AAC83649.1    CM000160    EDW95774.1    CM000364    EDX11724.1    CH480821    EDW54952.1    CH954181    EDV47890.1    KK854100    PTY11275.1    GGMR01016941    MBY29560.1    CAQQ02007907    CAQQ02007908    CAQQ02007909    RQTK01001150    RUS71853.1    PZQS01000010    PVD22970.1    QCYY01000543    ROT84428.1    MG491310    AZI71013.1    GBYB01004825    JAG74592.1    GFXV01003670    MBW15475.1    ABLF02027678    KQ422362    KOF75027.1    HACG01011757    CEK58622.1    KE346374    KJE97488.1    GECZ01003469    JAS66300.1    GECU01025655    GECU01007776    JAS82051.1    JAS99930.1    GBGD01001517    JAC87372.1    NEDP02003918    OWF47395.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000075920    + More
UP000092461    UP000053240    UP000008820    UP000002320    UP000030765    UP000069940    UP000249989    UP000069272    UP000000673    UP000019118    UP000030742    UP000245037    UP000027135    UP000075884    UP000007266    UP000075886    UP000009192    UP000075883    UP000008792    UP000075900    UP000076408    UP000075901    UP000075903    UP000075902    UP000075882    UP000007062    UP000075840    UP000076407    UP000075885    UP000092443    UP000078200    UP000092460    UP000092445    UP000075881    UP000235965    UP000192223    UP000001070    UP000268350    UP000001819    UP000008744    UP000092444    UP000092553    UP000009046    UP000075880    UP000037069    UP000007801    UP000007798    UP000192221    UP000000803    UP000002282    UP000095301    UP000000304    UP000076420    UP000001292    UP000008711    UP000015102    UP000095300    UP000271974    UP000245119    UP000283509    UP000007819    UP000053454    UP000008743    UP000242188   

PRIDE

H9JUF3    Q9VNC2   

Pfam

PF00850   Hist_deacetyl        + More
PF10269   Tmemb_185A
PF00244   14-3-3

Interpro

IPR003084   His_deacetylse_1        + More
IPR000286   His_deacetylse       
IPR023696   Ureohydrolase_dom_sf       
IPR037138   His_deacetylse_dom_sf       
IPR023801   His_deacetylse_dom       
IPR019396   TM_Fragile-X-F-assoc       
IPR036815   14-3-3_dom_sf       
IPR000308   14-3-3       
IPR023409   14-3-3_CS       
IPR023410   14-3-3_domain       

SUPFAM

SSF52768   SSF52768        + More
SSF48445   SSF48445       

Gene 3D

3.40.800.20     1.20.190.20    

ProteinModelPortal

H9JUF3   A0A1E1WCE1   S4PV06   A0A2A4JPL6   A0A0B5WYL7   A0A2H1X2Q6   + More
A0A437B1G7   A0A194PIE2   A0A212F234   A0A182VW75   A0A1L8DWY8   A0A1B0GIB0   A0A0N1I504   Q16QZ8   B0X1P4   A0A084W0K0   A0A023ERM0   A0A2M4BNS3   A0A1Y1K2Q7   A0A182HBL8   A0A2M3Z9Z7   A0A2M4ANK6   A0A182FSA0   W5J5F1   J3JTY3   A0A0A1WJN1   A0A2P8Y1E2   A0A0K8UZB8   A0A1L7N252   A0A0K8U3E5   A0A034WQK0   A0A336LLV5   W8CA23   A0A067R7R1   A0A182NQZ5   A0A1Q3F463   D6WYS7   A0A182QSK7   B4KD95   A0A182MEP8   B4LZC0   A0A182RG01   A0A182YNC5   A0A182SHD5   A0A182VGB9   A0A182TF68   A0A182L8D0   Q7PX00   A0A182HK42   A0A182XNZ7   A0A182PR77   A0A1A9XU26   A0A1A9VPK8   A0A1B0AVG5   A0A1A9ZJP7   A0A182JRG3   A0A2J7R7Y7   A0A1W4XTM3   B4JHV5   A0A3B0JQ91   B5DXY4   B4GF88   U5EVN6   A0A1B0GCY1   A0A0M5J4Z4   E0VKD4   A0A182IW81   A0A0L0BUJ3   B3LZH6   A0A0K8SU87   B4NB88   A0A1W4UJ00   A0A0A9WDV4   A0A2R7VRL2   Q7KTS4   Q9VNC2   B4PVA5   A0A1I8N7M5   B4QWW2   A0A2C9JHC5   B4I409   B3P2E0   A0A2R7VZD4   A0A2S2PJD5   T1GKI2   A0A1I8Q9N9   A0A3S1B0G7   A0A2T7NP68   A0A3R7T0P5   A0A3Q8Q043   A0A0C9R9J6   A0A2H8TMX3   J9KAR8   A0A0L8GDC4   A0A0B6YR45   A0A0D2WXJ4   A0A1B6GV27   A0A1B6JL65   A0A069DUM6   A0A210QF79  

KEGG

101744884    K11404 histone deacetylase 3 [EC:3.5.1.98] | (RefSeq) histone deacetylase 3

GO

GO:0032041   GO:0046872   GO:0005634   GO:0016021   GO:0004407   GO:0016787   GO:0019904   GO:0000118   GO:0070932   GO:0070933   GO:0045944   GO:0006342   GO:0043066   GO:0005737   GO:0030307   GO:0016575   GO:0006355   GO:0007406   GO:0043697  

Subcellular location

Nucleus  

Length:

67

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.38651

outside

1  -  67

 

 

Pi

305.097701

Theta

157.504805

Tajima's D

3.141897

CLR

0.282439

CSRT

0.984300784960752

Interpretation

Uncertain