Gene

KWMTBOMO09899

Pre Gene Modal

BGIBMGA013262

Annotation

PREDICTED:_SH2B_adapter_protein_1_[Bombyx_mori]

Location

Bomo_Chr16(-):11489848-11501943      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.601

CDS

ATGGCGGGCCCTTCGGACGGCGACCCCGACGGCTGGGTCGAGTACTGCGAGCGTGAGGCCCGCGCCGCCGCACAGGAGCTCGCTAAGGGCTGTCTCCCATACATTCAGCCCGGTCATGAAGCTGCTGCTCAACCTCCCACTACCCACAAGGATTTGCTTAAGAAATTCATAGACTGTTTTACTGAACATTTTGATATAGAAATAGGAAAATTAAAAGCACTGCACAAATTGCCTAATGGAACGCATACCGGTCATGACGAGAGTGACTACTCTGAAGACACTGAATCTCCCCAGACACAGCACAAGCCATTCTTCAGAAGGCTATCATTCAAAGGTCTTAGACGGGGGAAGGGACTTTTTCATAAACAGCATTCAGACGAAGTTGAACTCTCATCAAATTTGAACAAGCACAACAAGACTAAACTAGCTAAGATTGTCGTAGAATGTAGGAAGGAAGGATTAGTTAATTATTTAACACCAGAAAGCTTGGAGCAACCTAGTGGTCCACAAAAATGGGAACGATGCAGGCTAGCGCTCGTCAAGACTGTTGGTGGTTATATGTTAGAGTTTTATTCTCCGCCCAAATCCCAGAAACCTCGTAGCGGTGTCTTTTGTTTTCTAATATCGGAAGCAAGAGAGACCACTGCATTAGAGATGCCGGACCATGAAAACACGTTTGTTTTAAAGGCCGACAATAACATGGAATATGTAATAGAAGCATCAGACGTTGACGACATGAAGTCATGGTTAGCTACGATCAAGTACTGCATGAGGTCGCCTCCAACAGCGCAGCCCCCAGCCGATTCTCTACCAGAACCGGTTCCAGAACTCCCTCCACGTAGATCGTTGCCCCCGAGCCCGGAGCCTGAGTTGGCTTCGATCGCTGAGGAATGTGCCCCCGAGTTAGCGGAATGGCCGTGGTTCCATGGGACCCTGCCTCGGTCTAATGCTGCAGCGCTGGTGCTTGCTGGCGGGCATTCGGCGCATGGATGTTACCTCGTCAGGCAGAGTGAAACGAGACGTGGGGAGTACGTGCTCACGTTCAATTTCCAGGGCCGCGCAAAACACCTCCGCATGACCGTCAGCGAAGGTGGTCAGTGTAGAGTTCAGCATCTATGGTTCCCGAACGTGCTCGATATGCTCGAGCACTTCAGAGTTCACGCCATCCCGCTGGAGTCGGGTGGCGCTGCTGACGTCACGCTTGCGCAGTACGTCGTCTGCCCAGACCGACCCGACCAGCAACATCAAGTAACTCACGGCAGCGACGTGAGGCTTCGCAGAACTGAATTGGCGGCTCTGCTCTCCGCCCATGATCTACGTGCAGTCGATAATCATTACACGTTTGTTTAA

Protein

MAGPSDGDPDGWVEYCEREARAAAQELAKGCLPYIQPGHEAAAQPPTTHKDLLKKFIDCFTEHFDIEIGKLKALHKLPNGTHTGHDESDYSEDTESPQTQHKPFFRRLSFKGLRRGKGLFHKQHSDEVELSSNLNKHNKTKLAKIVVECRKEGLVNYLTPESLEQPSGPQKWERCRLALVKTVGGYMLEFYSPPKSQKPRSGVFCFLISEARETTALEMPDHENTFVLKADNNMEYVIEASDVDDMKSWLATIKYCMRSPPTAQPPADSLPEPVPELPPRRSLPPSPEPELASIAEECAPELAEWPWFHGTLPRSNAAALVLAGGHSAHGCYLVRQSETRRGEYVLTFNFQGRAKHLRMTVSEGGQCRVQHLWFPNVLDMLEHFRVHAIPLESGGAADVTLAQYVVCPDRPDQQHQVTHGSDVRLRRTELAALLSAHDLRAVDNHYTFV

Uniprot

H9JUP9   A0A2A4K5M0   A0A3S2P728   A0A212F280   A0A194PIG0   A0A0N1I6N2   + More
A0A2H1VZ02   A0A1L8DMV9   A0A1B0CK53   T1HN36   A0A224XF04   A0A1W4WMF9   A0A1B6DIC9   A0A139WGQ1   A0A023F0Q4   D2A4V7   A0A1B0D9A4   A0A0T6B4I0   U4TYC8   N6UPH5   A0A1B6K9G8   T1IQ70   A0A0A9ZB29   K7IZC7   A0A0P6GDK1   A0A146KLR8   A0A3S3PH42   A0A443RF93   A0A2S2R856   A0A443S8G8   X1WJP9   A0A2H8TKK5  

Pubmed

19121390    22118469    26354079    18362917    19820115    25474469    + More
23537049    25401762    20075255    26823975   

EMBL

BABH01022814    NWSH01000156    PCG78960.1    RSAL01000008    RVE53989.1    AGBW02010783    + More
OWR47836.1    KQ459602    KPI93201.1    KQ461178    KPJ07762.1    ODYU01005159    SOQ45752.1    GFDF01006298    JAV07786.1    AJWK01015754    AJWK01015755    AJWK01015756    ACPB03015121    GFTR01006832    JAW09594.1    GEDC01011854    GEDC01004451    JAS25444.1    JAS32847.1    KQ971344    KYB27132.1    GBBI01003667    JAC15045.1    EFA05273.2    AJVK01004294    AJVK01004295    LJIG01009808    KRT82339.1    KB631651    ERL85018.1    APGK01008768    APGK01008769    APGK01010957    APGK01010958    APGK01018153    APGK01018154    APGK01024004    KB740529    KB740070    KB738359    KB737774    ENN80455.1    ENN81727.1    ENN82646.1    ENN82926.1    GEBQ01031880    JAT08097.1    JH431292    GBHO01002005    JAG41599.1    GDIQ01034722    JAN60015.1    GDHC01021570    JAP97058.1    NCKU01001370    RWS12284.1    NCKU01000839    NCKU01000210    RWS13952.1    RWS16559.1    GGMS01016986    MBY86189.1    NCKV01005781    RWS23849.1    ABLF02039527    GFXV01002696    MBW14501.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000092461    UP000015103    UP000192223    UP000007266    UP000092462    UP000030742    UP000019118    UP000002358    UP000285301    UP000288716    UP000007819   

PRIDE

H9JUP9   

Pfam

PF08916   Phe_ZIP        + More
PF00017   SH2
PF00169   PH

Interpro

IPR011993   PH-like_dom_sf        + More
IPR015012   Phe_ZIP       
IPR001849   PH_domain       
IPR030523   SH2B       
IPR036290   Phe_ZIP_sf       
IPR000980   SH2       
IPR035057   SH2B1_SH2       
IPR036860   SH2_dom_sf       

SUPFAM

SSF55550   SSF55550        + More
SSF109805   SSF109805       

Gene 3D

2.30.29.30     3.30.505.10    

CDD

cd10346  SH2_SH2B_family

ProteinModelPortal

H9JUP9   A0A2A4K5M0   A0A3S2P728   A0A212F280   A0A194PIG0   A0A0N1I6N2   + More
A0A2H1VZ02   A0A1L8DMV9   A0A1B0CK53   T1HN36   A0A224XF04   A0A1W4WMF9   A0A1B6DIC9   A0A139WGQ1   A0A023F0Q4   D2A4V7   A0A1B0D9A4   A0A0T6B4I0   U4TYC8   N6UPH5   A0A1B6K9G8   T1IQ70   A0A0A9ZB29   K7IZC7   A0A0P6GDK1   A0A146KLR8   A0A3S3PH42   A0A443RF93   A0A2S2R856   A0A443S8G8   X1WJP9   A0A2H8TKK5  

PDB

5W3R     E-value=8.13554e-39,     Score=403

KEGG

101745173    no KO assigned | (RefSeq) SH2B adapter protein 1

GO

GO:0007165   GO:0035591   GO:0035556   GO:0005886   GO:0005068   GO:0004871   GO:0000077   GO:0006810   GO:0006412   GO:0006414   GO:0004816   GO:0005737   GO:0006421   GO:0016155   GO:0003824  

PANTHER

PTHR10872  

Length:

449

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01835

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00112

outside

1  -  449

 

 

Pi

340.212779

Theta

187.674702

Tajima's D

2.52514

CLR

0.206236

CSRT

0.945652717364132

Interpretation

Uncertain