SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09883  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013160
Annotation
PREDICTED:_glucose_and_ribitol_dehydrogenase_homolog_1-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.375
 

Sequence

CDS
ATGAGTTTCACAAATAAAGTGGTTCTCGTCACCGGCGGCAGCTCGGGTATCGGTGCCTCTGCCGCCGTACACTTCGCTAAGGAAGGTGCGGACGTGGCCATAGTAGGTCGTAACGTTACGAAACTGGACAACGTGGCCCGGGAATGTGCGCAGGTCGGCAAAAAGCCGCTCATCATTAAAGCTGACATTTCAAATGACGAAGAAGCGAAGAACATCGTCCAACAAACCATTGACGCCTTCGGGAAGCTAGATGTGCTCATTAACAACGCTGCAATGAACAAAGCCGGGTCCCTGCTCGCTGGCAACCTCCTTGAATCGTACGACGCAGTCACAGCGACTAATCTGAGAGCGGTCATTTTGATAACGAGCCTCGCAGCTCCGCACCTCATCGAGACGAAGGGAAACATCATAAACGTATCCAGTATCGGCGGAACCATGGTACCAATGCCAGGGTTTCTTGCATACTGCATGGGGAAAGCTAGTTTGAATCATTTTACGCGTGGTATTGCCTTGGAATTAGCTCCTCGTGGTGTCAGAGCAAACATCATCAGTCCAGGTCCTGTTTTAACTGATATCCTTGAGAATTCTGATAATGAGATTACCTGGGACAATTTGAAGACTGCCACGGCTTTGAAAAAAATAGGCGAACCGTCAGAAATTGCCGAGTTGATGTTGTTCCTGGCAAGTGACAAAGCTAGAAGCATAACTGGATCGAACTACGTCTCCGACAATGGAATGCTGCTGCTCAGATGA
Protein
MSFTNKVVLVTGGSSGIGASAAVHFAKEGADVAIVGRNVTKLDNVARECAQVGKKPLIIKADISNDEEAKNIVQQTIDAFGKLDVLINNAAMNKAGSLLAGNLLESYDAVTATNLRAVILITSLAAPHLIETKGNIINVSSIGGTMVPMPGFLAYCMGKASLNHFTRGIALELAPRGVRANIISPGPVLTDILENSDNEITWDNLKTATALKKIGEPSEIAELMLFLASDKARSITGSNYVSDNGMLLLR

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01022835    JF433973    AEM17060.1    BABH01022833    BABH01022834    KQ461178    + More
KPJ07784.1    KPJ07786.1    AK405443    BAM20756.1    KQ459602    KPI93179.1    KPJ07785.1    KQ459595    KPI95966.1    KQ460655    KPJ12939.1    KPI93176.1    KPJ12938.1    JTDY01000942    KOB75350.1    ODYU01013212    SOQ59906.1    AGBW02014512    OWR41545.1    KPJ12937.1    ODYU01001522    SOQ37852.1    JTDY01006084    KOB66312.1    NWSH01004416    PCG65151.1    KPI93178.1    AGBW02013539    OWR43254.1    KQ459579    KPI99448.1    KQ460571    KPJ13957.1    NWSH01001398    PCG71373.1    OWR41546.1    KQ459580    KPI99297.1    KQ460650    KPJ13113.1    KPI95964.1    BABH01022634    ODYU01000551    SOQ35503.1    KPI93177.1    NWSH01006959    PCG63175.1    SOQ37854.1    BABH01012981    PCG71375.1    KPI95965.1    ODYU01010994    SOQ56451.1    JTDY01009080    KOB64125.1    PCG71374.1    NWSH01001353    PCG71567.1    AK401409    BAM18031.1    NWSH01003146    PCG66863.1    LADJ01004337    KPJ20878.1    AK404043    BAM20116.1    AGBW02010783    OWR47824.1    PCG71376.1    AF255341    AAF70499.1    ODYU01002398    SOQ39832.1    ODYU01011234    SOQ56848.1    PCG65150.1    SOQ37853.1    BABH01022635    BABH01022636    KOB66313.1    ODYU01010604    SOQ55826.1    JTDY01004206    KOB68460.1    PCG65149.1    PCG65148.1    KQ459717    KPJ20326.1    ODYU01008068    SOQ51354.1    JTDY01008777    KOB64404.1    PCG71569.1    ODYU01009744    SOQ54378.1    EZ407245    ACX53802.1    JTDY01001151    KOB74729.1    KZ149910    PZC78151.1    OWR43255.1    AGBW02010784    OWR47781.1    PZC78149.1    PZC78150.1    KQ459596    KPI95296.1    AGBW02012537    OWR44869.1    KOB64405.1    ODYU01005275    SOQ45968.1    JTDY01000816    KOB75772.1    KQ460317    KPJ16010.1    OWR47820.1    KQ460643    KPJ13319.1    PCG71568.1    ODYU01012735    SOQ59194.1    NWSH01001143    PCG72417.1    ODYU01010177    SOQ55120.1    NWSH01000090    PCG79695.1    JTDY01007623    KOB65070.1    JTDY01004127    KOB68555.1    ODYU01006626    SOQ48636.1    KK854833    PTY19106.1    ADTU01025890    KQ982320    KYQ57786.1    GL888128    EGI66781.1    NWSH01005813    PCG63919.1    GL888223    EGI64444.1    EGI66779.1    ADTU01025889    ADTU01003750    EGI66780.1   
Pfam
PF00106   adh_short        + More
PF00292   PAX
PF00650   CRAL_TRIO
Interpro
IPR020904   Sc_DH/Rdtase_CS        + More
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR009057   Homeobox-like_sf       
IPR001523   Paired_dom       
IPR036865   CRAL-TRIO_dom_sf       
IPR001251   CRAL-TRIO_dom       
SUPFAM
SSF51735   SSF51735        + More
SSF46689   SSF46689       
SSF52087   SSF52087       
Gene 3D
PDB
1SPX     E-value=3.60437e-31,     Score=334

Ontologies

Topology

Subcellular location
Nucleus  
Length:
250
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.08132999999998
Exp number, first 60 AAs:
3.82501
Total prob of N-in:
0.25170
outside
1  -  250
 
 

Population Genetic Test Statistics

Pi
297.161004
Theta
197.010807
Tajima's D
1.613667
CLR
0
CSRT
0.818159092045398
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 GIALELAPR 100.00 7e-08
28556443 SGLAAYIFTK 100.00 7e-08
28556443 EGADVAIVGR 100.00 2e-04
28556443 NIVQQTIDAFGK 100.00 2e-04
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