Gene

KWMTBOMO09883  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013160

Annotation

PREDICTED:_glucose_and_ribitol_dehydrogenase_homolog_1-like_[Bombyx_mori]

Location

Bomo_Chr16(+):11200754-11201665      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.375

CDS

ATGAGTTTCACAAATAAAGTGGTTCTCGTCACCGGCGGCAGCTCGGGTATCGGTGCCTCTGCCGCCGTACACTTCGCTAAGGAAGGTGCGGACGTGGCCATAGTAGGTCGTAACGTTACGAAACTGGACAACGTGGCCCGGGAATGTGCGCAGGTCGGCAAAAAGCCGCTCATCATTAAAGCTGACATTTCAAATGACGAAGAAGCGAAGAACATCGTCCAACAAACCATTGACGCCTTCGGGAAGCTAGATGTGCTCATTAACAACGCTGCAATGAACAAAGCCGGGTCCCTGCTCGCTGGCAACCTCCTTGAATCGTACGACGCAGTCACAGCGACTAATCTGAGAGCGGTCATTTTGATAACGAGCCTCGCAGCTCCGCACCTCATCGAGACGAAGGGAAACATCATAAACGTATCCAGTATCGGCGGAACCATGGTACCAATGCCAGGGTTTCTTGCATACTGCATGGGGAAAGCTAGTTTGAATCATTTTACGCGTGGTATTGCCTTGGAATTAGCTCCTCGTGGTGTCAGAGCAAACATCATCAGTCCAGGTCCTGTTTTAACTGATATCCTTGAGAATTCTGATAATGAGATTACCTGGGACAATTTGAAGACTGCCACGGCTTTGAAAAAAATAGGCGAACCGTCAGAAATTGCCGAGTTGATGTTGTTCCTGGCAAGTGACAAAGCTAGAAGCATAACTGGATCGAACTACGTCTCCGACAATGGAATGCTGCTGCTCAGATGA

Protein

MSFTNKVVLVTGGSSGIGASAAVHFAKEGADVAIVGRNVTKLDNVARECAQVGKKPLIIKADISNDEEAKNIVQQTIDAFGKLDVLINNAAMNKAGSLLAGNLLESYDAVTATNLRAVILITSLAAPHLIETKGNIINVSSIGGTMVPMPGFLAYCMGKASLNHFTRGIALELAPRGVRANIISPGPVLTDILENSDNEITWDNLKTATALKKIGEPSEIAELMLFLASDKARSITGSNYVSDNGMLLLR

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JUE7   H6AGY1   H9JUQ7   H9JUQ8   H9JUE8   A0A0N0PAS3   + More
A0A0N1PFW5   I4DS66   A0A194PKC3   A0A0N0PB24   A0A194PR87   A0A0N1IFH9   A0A194PID7   A0A0N1IGV7   A0A0L7LIU8   A0A2H1X3T6   A0A212EJ88   A0A0N0PC39   A0A2H1VBR9   A0A0L7KSS2   A0A2A4IZG3   A0A194PJG5   A0A212EP45   A0A194Q286   A0A0N1IHB9   A0A2A4JIX4   A0A212EJ84   A0A194Q138   A0A0N1IDX2   A0A194PT74   H9JUK7   A0A2H1V3T7   A0A194PIN0   A0A2A4ITT1   A0A2H1VC89   H9JHN5   A0A2A4JH23   A0A194PXT8   A0A2H1WTS2   A0A0L7KLX4   A0A2A4JIH1   A0A2A4JHN9   I4DJE1   A0A2A4J612   A0A0N1PJN4   I4DQC6   A0A212F276   A0A2A4JHX2   Q9NBB5   A0A2H1VHE2   A0A2H1WUW2   A0A2A4J134   A0A2H1VAH5   H9JUK8   A0A0L7KSR6   A0A2H1WS78   A0A0L7KZ86   A0A2A4IZU2   A0A2A4J0E8   A0A0N0PET2   A0A2H1WFW5   H9JUI0   A0A0L7KN57   A0A2A4JIE3   A0A2H1WMX1   D2SNW1   A0A0L7LH86   A0A2W1BUV9   A0A212EP29   A0A212F231   A0A2W1BSW8   A0A2W1BZ77   A0A194PPC7   A0A212ETR6   A0A0L7KMQ4   A0A2H1VYS0   A0A0L7LK01   A0A0N1IIA2   A0A212F250   A0A0N0PCB2   A0A2A4JIM8   H9JUH9   A0A2H1X3K0   A0A2A4JK27   A0A2H1WPX2   A0A2A4K610   A0A0L7KPN2   A0A0L7KZH2   A0A2H1W6Q5   A0A2R7WHM1   A0A158NTG0   A0A151XBN1   F4WG14   A0A2A4IW86   F4WMX4   F4WG12   A0A158NTI2   A0A158NXY9   A0A1S3D915   F4WG13  

Pubmed

19121390    26354079    22651552    26227816    22118469    10861234    + More
20074338    28756777    21347285    21719571   

EMBL

BABH01022835    JF433973    AEM17060.1    BABH01022833    BABH01022834    KQ461178    + More
KPJ07784.1    KPJ07786.1    AK405443    BAM20756.1    KQ459602    KPI93179.1    KPJ07785.1    KQ459595    KPI95966.1    KQ460655    KPJ12939.1    KPI93176.1    KPJ12938.1    JTDY01000942    KOB75350.1    ODYU01013212    SOQ59906.1    AGBW02014512    OWR41545.1    KPJ12937.1    ODYU01001522    SOQ37852.1    JTDY01006084    KOB66312.1    NWSH01004416    PCG65151.1    KPI93178.1    AGBW02013539    OWR43254.1    KQ459579    KPI99448.1    KQ460571    KPJ13957.1    NWSH01001398    PCG71373.1    OWR41546.1    KQ459580    KPI99297.1    KQ460650    KPJ13113.1    KPI95964.1    BABH01022634    ODYU01000551    SOQ35503.1    KPI93177.1    NWSH01006959    PCG63175.1    SOQ37854.1    BABH01012981    PCG71375.1    KPI95965.1    ODYU01010994    SOQ56451.1    JTDY01009080    KOB64125.1    PCG71374.1    NWSH01001353    PCG71567.1    AK401409    BAM18031.1    NWSH01003146    PCG66863.1    LADJ01004337    KPJ20878.1    AK404043    BAM20116.1    AGBW02010783    OWR47824.1    PCG71376.1    AF255341    AAF70499.1    ODYU01002398    SOQ39832.1    ODYU01011234    SOQ56848.1    PCG65150.1    SOQ37853.1    BABH01022635    BABH01022636    KOB66313.1    ODYU01010604    SOQ55826.1    JTDY01004206    KOB68460.1    PCG65149.1    PCG65148.1    KQ459717    KPJ20326.1    ODYU01008068    SOQ51354.1    JTDY01008777    KOB64404.1    PCG71569.1    ODYU01009744    SOQ54378.1    EZ407245    ACX53802.1    JTDY01001151    KOB74729.1    KZ149910    PZC78151.1    OWR43255.1    AGBW02010784    OWR47781.1    PZC78149.1    PZC78150.1    KQ459596    KPI95296.1    AGBW02012537    OWR44869.1    KOB64405.1    ODYU01005275    SOQ45968.1    JTDY01000816    KOB75772.1    KQ460317    KPJ16010.1    OWR47820.1    KQ460643    KPJ13319.1    PCG71568.1    ODYU01012735    SOQ59194.1    NWSH01001143    PCG72417.1    ODYU01010177    SOQ55120.1    NWSH01000090    PCG79695.1    JTDY01007623    KOB65070.1    JTDY01004127    KOB68555.1    ODYU01006626    SOQ48636.1    KK854833    PTY19106.1    ADTU01025890    KQ982320    KYQ57786.1    GL888128    EGI66781.1    NWSH01005813    PCG63919.1    GL888223    EGI64444.1    EGI66779.1    ADTU01025889    ADTU01003750    EGI66780.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007151    UP000218220    + More
UP000005205    UP000075809    UP000007755    UP000079169   

PRIDE

H9JUE7    H6AGY1    H9JUQ7    H9JUQ8    H9JUE8    H9JUK7    + More
H9JHN5    H9JUK8    H9JUI0    H9JUH9   

Pfam

PF00106   adh_short        + More
PF00292   PAX
PF00650   CRAL_TRIO

Interpro

IPR020904   Sc_DH/Rdtase_CS        + More
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR009057   Homeobox-like_sf       
IPR001523   Paired_dom       
IPR036865   CRAL-TRIO_dom_sf       
IPR001251   CRAL-TRIO_dom       

SUPFAM

SSF51735   SSF51735        + More
SSF46689   SSF46689       
SSF52087   SSF52087       

Gene 3D

1.10.10.10     3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9JUE7   H6AGY1   H9JUQ7   H9JUQ8   H9JUE8   A0A0N0PAS3   + More
A0A0N1PFW5   I4DS66   A0A194PKC3   A0A0N0PB24   A0A194PR87   A0A0N1IFH9   A0A194PID7   A0A0N1IGV7   A0A0L7LIU8   A0A2H1X3T6   A0A212EJ88   A0A0N0PC39   A0A2H1VBR9   A0A0L7KSS2   A0A2A4IZG3   A0A194PJG5   A0A212EP45   A0A194Q286   A0A0N1IHB9   A0A2A4JIX4   A0A212EJ84   A0A194Q138   A0A0N1IDX2   A0A194PT74   H9JUK7   A0A2H1V3T7   A0A194PIN0   A0A2A4ITT1   A0A2H1VC89   H9JHN5   A0A2A4JH23   A0A194PXT8   A0A2H1WTS2   A0A0L7KLX4   A0A2A4JIH1   A0A2A4JHN9   I4DJE1   A0A2A4J612   A0A0N1PJN4   I4DQC6   A0A212F276   A0A2A4JHX2   Q9NBB5   A0A2H1VHE2   A0A2H1WUW2   A0A2A4J134   A0A2H1VAH5   H9JUK8   A0A0L7KSR6   A0A2H1WS78   A0A0L7KZ86   A0A2A4IZU2   A0A2A4J0E8   A0A0N0PET2   A0A2H1WFW5   H9JUI0   A0A0L7KN57   A0A2A4JIE3   A0A2H1WMX1   D2SNW1   A0A0L7LH86   A0A2W1BUV9   A0A212EP29   A0A212F231   A0A2W1BSW8   A0A2W1BZ77   A0A194PPC7   A0A212ETR6   A0A0L7KMQ4   A0A2H1VYS0   A0A0L7LK01   A0A0N1IIA2   A0A212F250   A0A0N0PCB2   A0A2A4JIM8   H9JUH9   A0A2H1X3K0   A0A2A4JK27   A0A2H1WPX2   A0A2A4K610   A0A0L7KPN2   A0A0L7KZH2   A0A2H1W6Q5   A0A2R7WHM1   A0A158NTG0   A0A151XBN1   F4WG14   A0A2A4IW86   F4WMX4   F4WG12   A0A158NTI2   A0A158NXY9   A0A1S3D915   F4WG13  

PDB

1SPX     E-value=3.60437e-31,     Score=334

KEGG

105842801    no KO assigned | (RefSeq) glucose and ribitol dehydrogenase homolog 1-like

GO

GO:0016491   GO:0016021   GO:0005634   GO:0007275   GO:0003677   GO:0006355   GO:0005622   GO:0006810   GO:0006412   GO:0006414   GO:0004816   GO:0005737   GO:0006421   GO:0016155   GO:0003824  

Subcellular location

Nucleus  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.08132999999998

Exp number, first 60 AAs:

3.82501

Total prob of N-in:

0.25170

outside

1  -  250

 

 

Pi

297.161004

Theta

197.010807

Tajima's D

1.613667

CLR

0

CSRT

0.818159092045398

Interpretation

Uncertain