Gene

KWMTBOMO09877  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013273

Annotation

CRAL-TRIO_domain-containing_protein?_partial_[Manduca_sexta]

Location

Bomo_Chr16(-):11125299-11142893      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.94 Nuclear   Reliability : 1.912

CDS

ATGTCGGTCAGTCCGTCTACTGGGTTCCCACTAGAAGAAGAGTACAAGAAGAACACCGGCATCACGCCTTGGGAAATAGCTGAACTAAGAAGCTGGCTGGAGACACAAACTCATATGCCAAGTGATGTCATTACAGATCTGGATTTGATCTTAGCCCATCACAGCTGCAAGAGGAATCCGGAGCAAACGAAACAAGTGCTGGAGCTACACTACACGCTGAAGACTCAGTACTCGTTTTTCCAAAATCGAACCCTCGATGATGAAGTGGAACTCACATTGAAAAGAATGTTGCTCAAACCCCTACCATCACGCACTAAAGACGGTTACGCCGTGTTCTATTCGCGACTGCTCGACTTTGAACCGAAACATCTCATCTTGCAAGAAGCACTAAAGTCAGTATTAATGGTTCTCGACCTATGGCAGTATCTCGAAGGCACATGGCCCGGTTTAGTCATTATCTTCGACTTGGAGGGTTTCAGATTAAGCCACATGTTCCGGCTTGAATTGCAAATTGTTCAGCAATTCTTACACTATTTAGAGCACGCGATGCTGGTACAATTAAAGGGCATACATTTAATGAACGCGCCCTTTTTCGCCAACCGACTGCTAATGATCTTGAAGAGGTTCGTTGGGTCTGAAATGATGCATTTGGTGAACACCCATACCGCTGGGTCTAACACGCTGGCCGAATATGTCGACGTGGAGATTCTGCCTAAAGAGGCCGGTGGAAGTTTTAGAAGTGTAGAGGAGTGCAGGGATGACACTATTGCCATGATGAAAGAAAATAAAGATTTTTTCCTTCAAGAAAACAAAAAACGTGTGACGGAATCCCTTCGACCCAAGAAAAGTCAAAATAAAAAAAAACCGGAGAAGTTTCTTAATATTGATTAA

Protein

MSVSPSTGFPLEEEYKKNTGITPWEIAELRSWLETQTHMPSDVITDLDLILAHHSCKRNPEQTKQVLELHYTLKTQYSFFQNRTLDDEVELTLKRMLLKPLPSRTKDGYAVFYSRLLDFEPKHLILQEALKSVLMVLDLWQYLEGTWPGLVIIFDLEGFRLSHMFRLELQIVQQFLHYLEHAMLVQLKGIHLMNAPFFANRLLMILKRFVGSEMMHLVNTHTAGSNTLAEYVDVEILPKEAGGSFRSVEECRDDTIAMMKENKDFFLQENKKRVTESLRPKKSQNKKKPEKFLNID

Uniprot

H9JUR0   A0A2H1V703   A0A2H1VNR9   A0A0S2Z3U0   A0A2A4JBJ3   A0A2H1VNP8   + More
A0A194PT99   A0A212F255   A0A2H4RMR3   A0A437BSJ4   A0A2H4RMT6   A0A212F272   H9JUE6   H9JUQ9   A0A3S2L272   A0A2A4IZQ3   A0A212F242   A0A2A4JLN7   A0A0S2Z313   A0A2H4RMW0   I4DLH3   H9JUQ5   A0A194PRP9   A0A0N0PCB2   A0A2H4RMR0   H9IUL0   A0A437B632   A0A2A4J9W6   A0A212F251   A0A2A4ISL2   A0A2H4RMP1   A0A310SB26   A0A0S2Z3V6   A0A0J7NH54   V9IMD6   A0A154PLR6   A0A1B6MQ64   A0A1B6MKT4   A0A2A3EJJ4   A0A0L7R9P5   A0A1B6GXD7   A0A1W4X5F9   A0A151HZ83   A0A158NIC6   A0A151IIH9   F4WLR1   A0A1B6JB60   D6W9C3   A0A1Q3FQZ8   E2A8Q9   A0A195DLY0   K7J0H8   A0A151WMV5   A0A195CB81   A0A151WMV2   A0A1S3DP78   A0A026VZY9   F4WEQ5   A0A158NIC7   A0A151HZE1   A0A195ECX6   A0A026W2F4   E2BL70   A0A151JTT8   A0A195ECZ2   A0A2S2Q3J3   A0A1Q3FRE7   A0A1Y1KS47   A0A151JTJ8   K7J0H5   A0A2R7WSN1   A0A1B6DDH3   K7ITY6   E9IA70   A0A151IIJ3   J9JNK6   K7ITY7   A0A088AC27   E2A8R3   E2A8R1   A0A1Y1JXE4   A0A195BKL4   E2BL75   A0A158NA70   A0A2S2NPS6   A0A232EEM7   A0A232F895   A0A151WMU4   A0A158NIC8   A0A1B6ISW4   A0A151JTJ2   F4X1H6   A0A2H8TII4   J9JP41   A0A1Y1LMD7  

Pubmed

19121390    25684408    26354079    22118469    29136137    22651552    + More
21347285    21719571    18362917    19820115    20798317    20075255    24508170    30249741    28004739    21282665    28648823   

EMBL

BABH01022842    BABH01022843    BABH01022844    ODYU01000988    SOQ36579.1    ODYU01003540    + More
SOQ42448.1    KT943550    ALQ33308.1    NWSH01002010    PCG69445.1    ODYU01003541    SOQ42450.1    KQ459595    KPI95989.1    AGBW02010783    OWR47825.1    MG434617    ATY51923.1    RSAL01000013    RVE53444.1    MG434644    ATY51950.1    OWR47826.1    BABH01022838    BABH01022835    BABH01022836    RSAL01000223    RVE44001.1    NWSH01004847    PCG64660.1    OWR47818.1    NWSH01001157    PCG72320.1    KT943538    ALQ33296.1    MG434659    ATY51965.1    AK402141    BAM18763.1    KPI95986.1    BABH01022824    KPI95987.1    KQ460643    KPJ13319.1    MG434609    ATY51915.1    BABH01000888    RSAL01000144    RVE45960.1    NWSH01002262    PCG68761.1    OWR47817.1    NWSH01007421    PCG62977.1    MG434601    ATY51907.1    KQ774368    OAD52321.1    KT943566    ALQ33324.1    LBMM01005052    KMQ91855.1    JR052704    AEY61761.1    KQ434973    KZC12773.1    GEBQ01001890    JAT38087.1    GEBQ01003498    JAT36479.1    KZ288238    PBC31369.1    KQ414624    KOC67554.1    GECZ01002683    JAS67086.1    KQ976695    KYM77582.1    ADTU01016468    KQ977477    KYN02476.1    GL888213    EGI64859.1    GECU01023166    GECU01011302    JAS84540.1    JAS96404.1    KQ971312    EEZ98182.1    GFDL01005015    JAV30030.1    GL437663    EFN70138.1    KQ980734    KYN13837.1    KQ982934    KYQ49137.1    KQ978009    KYM98124.1    KYQ49138.1    KK107536    EZA49210.1    GL888105    EGI67317.1    ADTU01016476    ADTU01016477    KYM77581.1    KQ979074    KYN23070.1    QOIP01000008    EZA49214.1    RLU19830.1    GL448949    EFN83556.1    KQ981875    KYN34011.1    KYN23073.1    GGMS01003091    MBY72294.1    GFDL01004937    JAV30108.1    GEZM01081328    JAV61707.1    KYN34015.1    KK855438    PTY22572.1    GEDC01013602    JAS23696.1    GL761987    EFZ22528.1    KYN02478.1    ABLF02013760    EFN70142.1    EFN70140.1    GEZM01098136    JAV53982.1    KQ976455    KYM85150.1    EFN83561.1    ADTU01010052    GGMR01006562    MBY19181.1    NNAY01005263    OXU16810.1    NNAY01000747    OXU26710.1    KYQ49140.1    ADTU01016481    ADTU01016482    ADTU01016483    ADTU01016484    GECU01017682    JAS90024.1    KYN34006.1    GL888529    EGI59704.1    GFXV01002129    MBW13934.1    ABLF02018999    ABLF02019001    ABLF02046099    GEZM01051567    JAV74799.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000053240    + More
UP000036403    UP000076502    UP000242457    UP000053825    UP000192223    UP000078540    UP000005205    UP000078542    UP000007755    UP000007266    UP000000311    UP000078492    UP000002358    UP000075809    UP000079169    UP000053097    UP000279307    UP000008237    UP000078541    UP000007819    UP000005203    UP000215335   

PRIDE

H9JUR0    H9JUE6    H9JUQ9    H9JUQ5    H9IUL0   

Pfam

PF00650   CRAL_TRIO        + More
PF00046   Homeodomain
PF00412   LIM

Interpro

IPR001251   CRAL-TRIO_dom        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR001356   Homeobox_dom       
IPR001781   Znf_LIM       
IPR009057   Homeobox-like_sf       
IPR011074   CRAL/TRIO_N_dom       

SUPFAM

SSF52087   SSF52087        + More
SSF46938   SSF46938       
SSF51735   SSF51735       
SSF46689   SSF46689       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14
cd00086  homeodomain

ProteinModelPortal

H9JUR0   A0A2H1V703   A0A2H1VNR9   A0A0S2Z3U0   A0A2A4JBJ3   A0A2H1VNP8   + More
A0A194PT99   A0A212F255   A0A2H4RMR3   A0A437BSJ4   A0A2H4RMT6   A0A212F272   H9JUE6   H9JUQ9   A0A3S2L272   A0A2A4IZQ3   A0A212F242   A0A2A4JLN7   A0A0S2Z313   A0A2H4RMW0   I4DLH3   H9JUQ5   A0A194PRP9   A0A0N0PCB2   A0A2H4RMR0   H9IUL0   A0A437B632   A0A2A4J9W6   A0A212F251   A0A2A4ISL2   A0A2H4RMP1   A0A310SB26   A0A0S2Z3V6   A0A0J7NH54   V9IMD6   A0A154PLR6   A0A1B6MQ64   A0A1B6MKT4   A0A2A3EJJ4   A0A0L7R9P5   A0A1B6GXD7   A0A1W4X5F9   A0A151HZ83   A0A158NIC6   A0A151IIH9   F4WLR1   A0A1B6JB60   D6W9C3   A0A1Q3FQZ8   E2A8Q9   A0A195DLY0   K7J0H8   A0A151WMV5   A0A195CB81   A0A151WMV2   A0A1S3DP78   A0A026VZY9   F4WEQ5   A0A158NIC7   A0A151HZE1   A0A195ECX6   A0A026W2F4   E2BL70   A0A151JTT8   A0A195ECZ2   A0A2S2Q3J3   A0A1Q3FRE7   A0A1Y1KS47   A0A151JTJ8   K7J0H5   A0A2R7WSN1   A0A1B6DDH3   K7ITY6   E9IA70   A0A151IIJ3   J9JNK6   K7ITY7   A0A088AC27   E2A8R3   E2A8R1   A0A1Y1JXE4   A0A195BKL4   E2BL75   A0A158NA70   A0A2S2NPS6   A0A232EEM7   A0A232F895   A0A151WMU4   A0A158NIC8   A0A1B6ISW4   A0A151JTJ2   F4X1H6   A0A2H8TII4   J9JP41   A0A1Y1LMD7  

PDB

3W68     E-value=2.07851e-10,     Score=156

KEGG

101746971    no KO assigned | (RefSeq) alpha-tocopherol transfer protein-like

GO

GO:0016491   GO:0003677   GO:0005634   GO:0046872  

Subcellular location

Nucleus  

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17226

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00535

outside

1  -  296

 

 

Pi

230.098427

Theta

157.128062

Tajima's D

1.626103

CLR

0.243402

CSRT

0.812959352032398

Interpretation

Uncertain