SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09877  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013273
Annotation
CRAL-TRIO_domain-containing_protein?_partial_[Manduca_sexta]
Location in the cell
Cytoplasmic   Reliability : 1.94 Nuclear   Reliability : 1.912
 

Sequence

CDS
ATGTCGGTCAGTCCGTCTACTGGGTTCCCACTAGAAGAAGAGTACAAGAAGAACACCGGCATCACGCCTTGGGAAATAGCTGAACTAAGAAGCTGGCTGGAGACACAAACTCATATGCCAAGTGATGTCATTACAGATCTGGATTTGATCTTAGCCCATCACAGCTGCAAGAGGAATCCGGAGCAAACGAAACAAGTGCTGGAGCTACACTACACGCTGAAGACTCAGTACTCGTTTTTCCAAAATCGAACCCTCGATGATGAAGTGGAACTCACATTGAAAAGAATGTTGCTCAAACCCCTACCATCACGCACTAAAGACGGTTACGCCGTGTTCTATTCGCGACTGCTCGACTTTGAACCGAAACATCTCATCTTGCAAGAAGCACTAAAGTCAGTATTAATGGTTCTCGACCTATGGCAGTATCTCGAAGGCACATGGCCCGGTTTAGTCATTATCTTCGACTTGGAGGGTTTCAGATTAAGCCACATGTTCCGGCTTGAATTGCAAATTGTTCAGCAATTCTTACACTATTTAGAGCACGCGATGCTGGTACAATTAAAGGGCATACATTTAATGAACGCGCCCTTTTTCGCCAACCGACTGCTAATGATCTTGAAGAGGTTCGTTGGGTCTGAAATGATGCATTTGGTGAACACCCATACCGCTGGGTCTAACACGCTGGCCGAATATGTCGACGTGGAGATTCTGCCTAAAGAGGCCGGTGGAAGTTTTAGAAGTGTAGAGGAGTGCAGGGATGACACTATTGCCATGATGAAAGAAAATAAAGATTTTTTCCTTCAAGAAAACAAAAAACGTGTGACGGAATCCCTTCGACCCAAGAAAAGTCAAAATAAAAAAAAACCGGAGAAGTTTCTTAATATTGATTAA
Protein
MSVSPSTGFPLEEEYKKNTGITPWEIAELRSWLETQTHMPSDVITDLDLILAHHSCKRNPEQTKQVLELHYTLKTQYSFFQNRTLDDEVELTLKRMLLKPLPSRTKDGYAVFYSRLLDFEPKHLILQEALKSVLMVLDLWQYLEGTWPGLVIIFDLEGFRLSHMFRLELQIVQQFLHYLEHAMLVQLKGIHLMNAPFFANRLLMILKRFVGSEMMHLVNTHTAGSNTLAEYVDVEILPKEAGGSFRSVEECRDDTIAMMKENKDFFLQENKKRVTESLRPKKSQNKKKPEKFLNID

Summary

EMBL
BABH01022842    BABH01022843    BABH01022844    ODYU01000988    SOQ36579.1    ODYU01003540    + More
SOQ42448.1    KT943550    ALQ33308.1    NWSH01002010    PCG69445.1    ODYU01003541    SOQ42450.1    KQ459595    KPI95989.1    AGBW02010783    OWR47825.1    MG434617    ATY51923.1    RSAL01000013    RVE53444.1    MG434644    ATY51950.1    OWR47826.1    BABH01022838    BABH01022835    BABH01022836    RSAL01000223    RVE44001.1    NWSH01004847    PCG64660.1    OWR47818.1    NWSH01001157    PCG72320.1    KT943538    ALQ33296.1    MG434659    ATY51965.1    AK402141    BAM18763.1    KPI95986.1    BABH01022824    KPI95987.1    KQ460643    KPJ13319.1    MG434609    ATY51915.1    BABH01000888    RSAL01000144    RVE45960.1    NWSH01002262    PCG68761.1    OWR47817.1    NWSH01007421    PCG62977.1    MG434601    ATY51907.1    KQ774368    OAD52321.1    KT943566    ALQ33324.1    LBMM01005052    KMQ91855.1    JR052704    AEY61761.1    KQ434973    KZC12773.1    GEBQ01001890    JAT38087.1    GEBQ01003498    JAT36479.1    KZ288238    PBC31369.1    KQ414624    KOC67554.1    GECZ01002683    JAS67086.1    KQ976695    KYM77582.1    ADTU01016468    KQ977477    KYN02476.1    GL888213    EGI64859.1    GECU01023166    GECU01011302    JAS84540.1    JAS96404.1    KQ971312    EEZ98182.1    GFDL01005015    JAV30030.1    GL437663    EFN70138.1    KQ980734    KYN13837.1    KQ982934    KYQ49137.1    KQ978009    KYM98124.1    KYQ49138.1    KK107536    EZA49210.1    GL888105    EGI67317.1    ADTU01016476    ADTU01016477    KYM77581.1    KQ979074    KYN23070.1    QOIP01000008    EZA49214.1    RLU19830.1    GL448949    EFN83556.1    KQ981875    KYN34011.1    KYN23073.1    GGMS01003091    MBY72294.1    GFDL01004937    JAV30108.1    GEZM01081328    JAV61707.1    KYN34015.1    KK855438    PTY22572.1    GEDC01013602    JAS23696.1    GL761987    EFZ22528.1    KYN02478.1    ABLF02013760    EFN70142.1    EFN70140.1    GEZM01098136    JAV53982.1    KQ976455    KYM85150.1    EFN83561.1    ADTU01010052    GGMR01006562    MBY19181.1    NNAY01005263    OXU16810.1    NNAY01000747    OXU26710.1    KYQ49140.1    ADTU01016481    ADTU01016482    ADTU01016483    ADTU01016484    GECU01017682    JAS90024.1    KYN34006.1    GL888529    EGI59704.1    GFXV01002129    MBW13934.1    ABLF02018999    ABLF02019001    ABLF02046099    GEZM01051567    JAV74799.1   
Pfam
PF00650   CRAL_TRIO        + More
PF00046   Homeodomain
PF00412   LIM
Interpro
IPR001251   CRAL-TRIO_dom        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR001356   Homeobox_dom       
IPR001781   Znf_LIM       
IPR009057   Homeobox-like_sf       
IPR011074   CRAL/TRIO_N_dom       
SUPFAM
SSF52087   SSF52087        + More
SSF46938   SSF46938       
SSF51735   SSF51735       
SSF46689   SSF46689       
Gene 3D
PDB
3W68     E-value=2.07851e-10,     Score=156

Ontologies

Topology

Subcellular location
Nucleus  
Length:
296
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.17226
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00535
outside
1  -  296
 
 

Population Genetic Test Statistics

Pi
230.098427
Theta
157.128062
Tajima's D
1.626103
CLR
0.243402
CSRT
0.812959352032398
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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