SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09876  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013157
Annotation
ribosomal_protein_P2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.167 Nuclear   Reliability : 1.028
 

Sequence

CDS
ATGCGTTACGTGGCCGCGTATTTACTGGCTGTGCTGGGTGGCAAGACCACGCCAGCTGCCGCTGACGTTGAGAAGATCCTCAGCTCCGTCGGTATCGAAGCTGACGCTGAGAAGCTTAAGAAAGTAATCACTGAGCTCAACGGCAAGGATGTTGAACAACTTATTGCGGCCGGACGTGAGAAGCTGTCGTCAATGCCAGTAGGAGGCGGAGCACCTGCAGCGGCTGCTGCAGCTGCCCCAGCTGCTGCTGCTGCTGAGGAGAAGAAAGAGGACAAGAAAGAGGAGAAGAAAGAAGACTCTGAATCTGACGATGACATGGGCTTCGGTCTCTTTGACTAA
Protein
MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPAAAAAAAPAAAAAEEKKEDKKEEKKEDSESDDDMGFGLFD

Summary

Similarity
Belongs to the eukaryotic ribosomal protein P1/P2 family.
Interpro
IPR027534   Ribosomal_L12        + More
IPR001859   T.cruzi_P2-like       
IPR038716   P1/P2_N_sf       
Gene 3D
ProteinModelPortal
PDB
2W1O     E-value=2.33332e-16,     Score=202

Ontologies

Topology

SignalP
Position:   1 - 21,         Likelihood:  0.854263
 
 
Length:
112
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.29664
Exp number, first 60 AAs:
0.03554
Total prob of N-in:
0.21913
outside
1  -  112
 
 

Population Genetic Test Statistics

Pi
310.85967
Theta
214.3752
Tajima's D
1.327988
CLR
0
CSRT
0.747612619369032
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27102218 IISSVGIEADAEKIK 95.65 8e-09
28556443 VITELNGKDVEQLIAAGR 100.00 3e-06
28556443 VITELNGK 100.00 3e-06
28556443 LSSMPVGGGAPAAAAAAAPAAAAAEEK 100.00 3e-06
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