SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09867  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013277
Annotation
Uncharacterized_protein_OBRU01_13232_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 2.463
 

Sequence

CDS
ATGTCACACACTGTTTTAAGAGGGAAGCCAAACGCTTCTCAACTGTATCTAGATGAAGTGTTAAATGAAATATTAACGGCCAAAGGTGTCGTTCCAGATGCAAAAGAGCGGGATAGATTGATATTAGCAGAAATTGCTTTTCACTGTCTAAAGAAACGACCAAACGCCACAAACATGATAAACGGATCGACTGGAGAAAGTTTCACAAATGAGCAAATTCTGAAACGCGCTGTATCTATTGCACGTTCTATAATGGCCAGAGGGGCCGCAGGGAACAACATTATGGTGGTGATGAGAAACCATCAAAATTTATTTTCTATCTATTGGTCACTACTACTTAGTGGTGCTTTACCTTTCATGATGGATCCCAGCACTACTGTTTATGAACTCGGTTATTTTCTTCAATTACTCGAACCAAGTATAGTGTTTTGTGACCGAGAATATTACAACGACATAAAAAAATCTTTAGATGACTTGCCTGATCTTAAAACAGAGGTTTACATTTGCAACGAAGACGACCTTCTAGAGGATTTTATAAATGGGCATAGTAACGACATCGACAGTTTTAGGATTCCCGAAGGGAATCCAGAGGATACAATATTATTACTACCCACAAGTGGATCCACTGGACTACCTAAAGCCGTACTCTTAACAAATAGGGGAATAGTTGCTCATCTACCTACGTCTTGGACGTATCACACGAAGTTTCCTACGCCAACTGATCTGGTGATGGTATTGACGACAGCGCAATGGATGACGTTTACCATGAAAATCACGACATGCGCCGTTTACCACATACCAATTCTAGTAACTCCCAAGAAAAGAACAGTCGAACATGTCATTGAGATAATCGAGAACTTCCGGCCGACTTGGACGTTTTTCAATCCAGCTTTTGCGAAAGGCTTACTGGCGGTCGTCAGGCGCGAACAGATAGGATCTTTGGAGACCATAATACTCCTCGGATCTCTTGTCACTCCTGATTTAGTTAAGGAATTCAAGGAGAAACTACACCCAGATACACATTTATGTAATGGATATGGGACCACCGAGACACAAGGATTCATCGCTGTGACCGACAGAGACGCGGAGGCTAGCTCGAATGGATGGGTGTATAATATTTTACATTACAAGTTGATCGATGATAATGGCGCTGAAGTGGGTCCAGGGAGTAATGGTGAACTTTACGTTAAAGGCGAATGTGTCGTTAAGGGCTATTACAAAAATAAAGAAGCCTACAGCGAATCCTTTGTGGACGGTTGGTACAAAACGGGAGACTGGTTCCATTTGGATGAGAACGAACGCCTTCACTTTTTGGAGAGGAGGAAATTCAATTTCAAATTCCGGGGGTGTCACGTGTCTCCGGAAGAAGTTGAAGGCGTCATCGGTAAATTACCAGGAGTACACGAGAGCGTGGTGGTGGCAACTGAAATCGGACCCGCTGCAGCTGTAGTCCTCTTACCAGAATACGACCTTACTAGAGAAGATATTAATAAGGCTGTAGACTCAACACTAAGCGATCACAAGAGATTGCACGGAGGCATTGCGTTCGTGGACTCATTGCCGCATACGCACTCAGGAAAACTAAAGAGAATGGAATGCAAGAAGCTCATAGAAGAACTCTTAAAGGATGGAAAATGTTTTTGA
Protein
MSHTVLRGKPNASQLYLDEVLNEILTAKGVVPDAKERDRLILAEIAFHCLKKRPNATNMINGSTGESFTNEQILKRAVSIARSIMARGAAGNNIMVVMRNHQNLFSIYWSLLLSGALPFMMDPSTTVYELGYFLQLLEPSIVFCDREYYNDIKKSLDDLPDLKTEVYICNEDDLLEDFINGHSNDIDSFRIPEGNPEDTILLLPTSGSTGLPKAVLLTNRGIVAHLPTSWTYHTKFPTPTDLVMVLTTAQWMTFTMKITTCAVYHIPILVTPKKRTVEHVIEIIENFRPTWTFFNPAFAKGLLAVVRREQIGSLETIILLGSLVTPDLVKEFKEKLHPDTHLCNGYGTTETQGFIAVTDRDAEASSNGWVYNILHYKLIDDNGAEVGPGSNGELYVKGECVVKGYYKNKEAYSESFVDGWYKTGDWFHLDENERLHFLERRKFNFKFRGCHVSPEEVEGVIGKLPGVHESVVVATEIGPAAAVVLLPEYDLTREDINKAVDSTLSDHKRLHGGIAFVDSLPHTHSGKLKRMECKKLIEELLKDGKCF

Summary

EMBL
ODYU01003146    SOQ41530.1    JTDY01002178    KOB71941.1    RSAL01000060    RVE49662.1    + More
KQ459595    KPI95997.1    KQ460652    KPJ12977.1    JTDY01002284    KOB71743.1    AGBW02009293    OWR51173.1    KU925757    AOG75382.1    KU925729    AOG75354.1    KU925772    AOG75397.1    KU925742    AOG75367.1    RSAL01000205    RVE44356.1    KU925719    AOG75344.1    KZ150128    PZC73096.1    NWSH01001632    PCG70636.1    NWSH01001926    PCG69652.1    ODYU01001291    SOQ37304.1    ODYU01004651    SOQ44755.1    KQ459582    KPI98875.1    KPI98876.1    KZ150081    PZC73876.1    PZC73878.1    NWSH01003054    PCG67037.1    KQ460878    KPJ11572.1    PCG67036.1    KU925758    AOG75383.1    KPI98874.1    AGBW02007648    OWR55128.1    KU925745    AOG75370.1    KU925730    AOG75355.1    KPI98872.1    NWSH01001271    PCG71900.1    KU925773    AOG75398.1    KU925743    AOG75368.1    KU925761    AOG75386.1    PZC73875.1    KPJ11574.1    KPI98873.1    ODYU01000111    SOQ34327.1    NWSH01001893    PCG69777.1    KU925733    AOG75358.1    PCG69778.1    KU925720    AOG75345.1    KU925775    AOG75400.1    ODYU01002332    SOQ39697.1    KU925759    AOG75384.1    KU925722    AOG75347.1    ODYU01005841    SOQ47125.1    ODYU01000839    SOQ36210.1    ODYU01000840    SOQ36211.1    KU925732    AOG75357.1    KU925774    AOG75399.1    KU925744    AOG75369.1    ODYU01002515    SOQ40108.1    KU925762    AOG75387.1    KU925721    AOG75346.1    ODYU01009613    SOQ54167.1    JXUM01008996    KQ560274    KXJ83386.1    SOQ40110.1    KU925747    AOG75372.1    KU925746    AOG75371.1    DS235862    EEB19209.1    ODYU01000351    SOQ34963.1    NWSH01000564    PCG75621.1    AAAB01008944    CH477697    EAT37103.1    KU925717    AOG75342.1    APCN01000732    DS232456    EDS42048.1    RSAL01000342    RVE42388.1    CH477407    EAT41541.1    KU925770    AOG75395.1    DS233521    EDS30382.1    UFQS01001959    UFQT01001959    SSX12785.1    SSX32227.1    KU925755    AOG75380.1    CH477881    EAT35397.1    SSX12784.1    SSX32226.1    APCN01000731    UFQS01000158    UFQT01000158    SSX00648.1    SSX21028.1    UFQS01001030    UFQT01001030    SSX08633.1    SSX28549.1    KU925740    AOG75365.1    EAL40219.3    UFQS01002704    UFQT01002704    SSX14568.1    SSX33966.1    GANO01001547    JAB58324.1    GFDL01011454    JAV23591.1    RSAL01000040    RVE50945.1   
Pfam
PF00501   AMP-binding        + More
PF13193   AMP-binding_C
Interpro
IPR025110   AMP-bd_C        + More
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       
IPR020845   AMP-binding_CS       
Gene 3D
PDB
6AC3     E-value=8.45332e-35,     Score=370

Ontologies

Topology

Length:
547
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
10.40985
Exp number, first 60 AAs:
0.00072
Total prob of N-in:
0.48071
outside
1  -  547
 
 

Population Genetic Test Statistics

Pi
283.040714
Theta
175.838028
Tajima's D
1.838103
CLR
0.226169
CSRT
0.853157342132893
Interpretation
Uncertain
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