Gene

KWMTBOMO09863

Pre Gene Modal

BGIBMGA013156

Annotation

PREDICTED:_TWiK_family_of_potassium_channels_protein_7-like_[Amyelois_transitella]

Location

Bomo_Chr16(+):10709019-10714394      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.197

CDS

ATGCAAGTTTTATGGAAGAACCGAAATGCTGTTTTACAAGAAGAGGAGAACTGGACCAAATTAGCTGCTAAAGAGTTAATGGATTTCCAAAAGGTTCTTATAAAGAGCATGCGCGGCGGCGTACTGTTGGACAATAAGCTAACCTTTGATCACGAATCCGACTACAGATGGACATTTTCAAATAGTTTCCTTTATGCCTTGACTTTGATCACGACGATTGGCCATGGAAACGTCACTCCTAAATCATCAGTGGGGAAAATGGTTGCTGTGGTCTATGCTTGCATCGGCATTCCCATAATTATGCTGTATCTCTCCACTATCGGCGAAGCACTGGCCCGAAACTTCCGAGTGCTTTATTCGAAGATCTGCCCATCGAGCCAGAACAGCGACAGCTTCCACACCAAAGCAGACTGCTTGAACCGACACTCTGTTCAAGGCGAGTGCAGTAAAGATAAAAGGGAGAAGTACAGTGGCGAACAACAAAAGCGGACCCCTTTTCAAGCTGCGTTAAATTTAGATAATTTTAGTGGTGGCTATCATTGGACGTGTCGGGACCACACTCGTGTGCCAATTATTCTTAGTTTCTTTCTAATCGTACTTTATATAGGATTAGGCTCCTTTGTATTCCACACGACAGAGAAATGGGACTTCATGGACGGATGTTTCTTTTCATTCGCAAGTTTGGCAACCATAGGTTTTGGTGACTTGAAACCAGGGTTGTATGCCAGCACCGTTTCTCCCAAGGCTGAAGATATAGCTGTAGGCGTGTGCTGCATTTACATTTTAGTGGGTATCGTAATAATAGCTATGTGTTTTAATCTCATACAAGAAGACATGAGTACGATGTTAAAGAAATTTACGACATTATGTACGGGAACTGCGAAATCTCGAGCCGTGCACAGCGTGGAGAAGATATGCGATGATAAAATACCTATGTCAATTGTTTCCTGA

Protein

MQVLWKNRNAVLQEEENWTKLAAKELMDFQKVLIKSMRGGVLLDNKLTFDHESDYRWTFSNSFLYALTLITTIGHGNVTPKSSVGKMVAVVYACIGIPIIMLYLSTIGEALARNFRVLYSKICPSSQNSDSFHTKADCLNRHSVQGECSKDKREKYSGEQQKRTPFQAALNLDNFSGGYHWTCRDHTRVPIILSFFLIVLYIGLGSFVFHTTEKWDFMDGCFFSFASLATIGFGDLKPGLYASTVSPKAEDIAVGVCCIYILVGIVIIAMCFNLIQEDMSTMLKKFTTLCTGTAKSRAVHSVEKICDDKIPMSIVS

Similarity

Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.

Uniprot

A0A3S2N978   A0A2H1W8J8   A0A194PXX7   A0A0L7L1Z8   A0A212FM49   A0A0N1I6X3   + More
A0A2S2NIS9   A0A1B6BXP2   A0A2H8TJ61   A0A1B6DHS3   A0A0A9Z638   A0A2L2YQC8   A0A182R2U0   A0A182K5F1   A0A2R7WRI0   A0A453YR86   A0A182XB81   A0A1S4GMN2   A0A182HWZ6   A0A182WAT8   A0A182PNG0   A0A182NN86   A0A182FLS6   A0A182GEM1   D2A3Q6   V3ZUS1   A0A0M4E3U7   A0A1J1HUR8   E2C7D3   A0A2J7Q9D4   T1IJW1   A0A1B6I5R3   A0A067QMW6   A0A1J1HUR2   D2A6I4   A0A1J1HWK4   A0A154PA07   V3ZRN1   A0A1I8PU96   A0A2S2NE42   A0A2H8TLH3   A0A3L8DE05   R7U6K0   A0A0L8GLX0   A0A182QHT4   A0A210QTX8   A0A1B6DH55   A0A1B6LPX4   T1EGS2   A0A0P4Y6Y5   A0A0M3QZE2   E9GA12   A0A182YI69   A0A182NN88   K1PKK9   B4L2G2   A0A182R2U3   A0A158NJU8   R7U1G0   A0A226E6Z7   T1EJ43   A0A044V410   T1G0W3   A0A1D1VS01   E3LS47   A0A1I7VTG2   A0A1D1VQB7   D6WYP0   A0A139WDM6   A0A074ZT08   A0A1S0U587   A0A2P6K3W2   E9H402   A0A2P6KZF1   R7UC91   G7YHV4   A0A3R7ERI4   A0A0B2UMR5   A0A154PFT0   A0A3M7QG93   A0A2R4KQY6   A0A2A6CIP7   A0A195FSD6   A0A183ALE8   A0A0L7RCB2   A0A1W4X1N0   A0A0N8BSJ7   A0A0P5DCC5   A0A0P5SAB2   A0A0P5BE98   A0A0P5Q7G1   E9H9W3   T1EDB5   A0A0P5J1L8   A0A139WC92  

Pubmed

26354079    26227816    22118469    25401762    26561354    12364791    + More
26483478    18362917    19820115    23254933    20798317    24845553    30249741    28812685    21292972    25244985    22992520    17994087    21347285    27649274    25217238    22023798    30375419    18806794   

EMBL

RSAL01000497    RVE41529.1    ODYU01006903    SOQ49172.1    KQ459595    KPI96000.1    + More
JTDY01003458    KOB69528.1    AGBW02007655    OWR54811.1    KQ460652    KPJ12973.1    GGMR01004465    MBY17084.1    GEDC01031518    GEDC01025482    GEDC01019003    JAS05780.1    JAS11816.1    JAS18295.1    GFXV01002341    MBW14146.1    GEDC01026712    GEDC01014941    GEDC01012080    JAS10586.1    JAS22357.1    JAS25218.1    GBHO01025226    GBHO01025221    GBHO01004258    GBHO01004257    GBHO01004255    JAG18378.1    JAG18383.1    JAG39346.1    JAG39347.1    JAG39349.1    IAAA01031791    IAAA01031792    LAA09565.1    KK855358    PTY22164.1    AAAB01008968    APCN01006853    JXUM01058168    JXUM01058169    JXUM01058170    JXUM01058171    JXUM01058172    JXUM01058173    KQ561990    KXJ76972.1    KQ971348    EFA04896.1    KB203440    ESO84681.1    CP012524    ALC40566.1    CVRI01000021    CRK91749.1    GL453369    EFN76120.1    NEVH01016370    PNF25195.1    JH430359    GECU01025447    JAS82259.1    KK853235    KDR09567.1    CRK91739.1    EFA04915.1    CRK91740.1    KQ434839    KZC08020.1    KB202954    ESO86997.1    GGMR01002790    MBY15409.1    GFXV01003180    MBW14985.1    QOIP01000009    RLU18665.1    AMQN01001996    KB307554    ELT98770.1    KQ421376    KOF77590.1    AXCN02001900    NEDP02001925    OWF52167.1    GEDC01012257    JAS25041.1    GEBQ01014187    JAT25790.1    AMQM01007336    KB097599    ESN93612.1    GDIP01233930    JAI89471.1    CP012528    ALC49219.1    GL732536    EFX83663.1    JH817993    EKC24562.1    CH933810    EDW06838.2    ADTU01001990    ADTU01001991    ADTU01001992    ADTU01001993    ADTU01001994    ADTU01001995    AMQN01009906    KB306576    ELT99712.1    LNIX01000006    OXA52737.1    AMQM01003437    KB096134    ESO08197.1    CMVM020000249    AMQM01002765    KB095858    ESO10860.1    BDGG01000010    GAV03751.1    DS268414    EFP09568.1    GAV03750.1    KQ971357    EFA08415.2    KYB26059.1    KL596664    KER30236.1    JH712223    EFO25445.2    MWRG01031807    PRD21016.1    GL732589    EFX73616.1    MWRG01003347    PRD31706.1    AMQN01009528    KB305619    ELU00882.1    DF143310    GAA52537.1    NIRI01002155    RJW63468.1    JPKZ01003266    KHN72276.1    KQ434893    KZC10672.1    REGN01006254    RNA10242.1    MF069081    AVV64028.1    ABKE03000028    PDM77947.1    KQ981305    KYN42814.1    UZAN01045073    VDP82008.1    KQ414616    KOC68464.1    GDIQ01149083    JAL02643.1    GDIP01162143    JAJ61259.1    GDIQ01098888    LRGB01001361    JAL52838.1    KZS12615.1    GDIP01186434    JAJ36968.1    GDIQ01118089    JAL33637.1    GL732609    EFX71471.1    AMQM01006994    KB097552    ESN94959.1    GDIQ01204398    JAK47327.1    KQ971372    KYB25451.1   

Proteomes

UP000283053    UP000053268    UP000037510    UP000007151    UP000053240    UP000075900    + More
UP000075881    UP000076407    UP000075840    UP000075920    UP000075885    UP000075884    UP000069272    UP000069940    UP000249989    UP000007266    UP000030746    UP000092553    UP000183832    UP000008237    UP000235965    UP000027135    UP000076502    UP000095300    UP000279307    UP000014760    UP000053454    UP000075886    UP000242188    UP000015101    UP000000305    UP000076408    UP000005408    UP000009192    UP000005205    UP000198287    UP000024404    UP000186922    UP000008281    UP000095285    UP000031036    UP000276133    UP000232936    UP000078541    UP000050740    UP000053825    UP000192223    UP000076858   

Pfam

PF07885   Ion_trans_2

Interpro

IPR003280   2pore_dom_K_chnl        + More
IPR013099   K_chnl_dom       
IPR003092   2pore_dom_K_chnl_TASK       

ProteinModelPortal

A0A3S2N978   A0A2H1W8J8   A0A194PXX7   A0A0L7L1Z8   A0A212FM49   A0A0N1I6X3   + More
A0A2S2NIS9   A0A1B6BXP2   A0A2H8TJ61   A0A1B6DHS3   A0A0A9Z638   A0A2L2YQC8   A0A182R2U0   A0A182K5F1   A0A2R7WRI0   A0A453YR86   A0A182XB81   A0A1S4GMN2   A0A182HWZ6   A0A182WAT8   A0A182PNG0   A0A182NN86   A0A182FLS6   A0A182GEM1   D2A3Q6   V3ZUS1   A0A0M4E3U7   A0A1J1HUR8   E2C7D3   A0A2J7Q9D4   T1IJW1   A0A1B6I5R3   A0A067QMW6   A0A1J1HUR2   D2A6I4   A0A1J1HWK4   A0A154PA07   V3ZRN1   A0A1I8PU96   A0A2S2NE42   A0A2H8TLH3   A0A3L8DE05   R7U6K0   A0A0L8GLX0   A0A182QHT4   A0A210QTX8   A0A1B6DH55   A0A1B6LPX4   T1EGS2   A0A0P4Y6Y5   A0A0M3QZE2   E9GA12   A0A182YI69   A0A182NN88   K1PKK9   B4L2G2   A0A182R2U3   A0A158NJU8   R7U1G0   A0A226E6Z7   T1EJ43   A0A044V410   T1G0W3   A0A1D1VS01   E3LS47   A0A1I7VTG2   A0A1D1VQB7   D6WYP0   A0A139WDM6   A0A074ZT08   A0A1S0U587   A0A2P6K3W2   E9H402   A0A2P6KZF1   R7UC91   G7YHV4   A0A3R7ERI4   A0A0B2UMR5   A0A154PFT0   A0A3M7QG93   A0A2R4KQY6   A0A2A6CIP7   A0A195FSD6   A0A183ALE8   A0A0L7RCB2   A0A1W4X1N0   A0A0N8BSJ7   A0A0P5DCC5   A0A0P5SAB2   A0A0P5BE98   A0A0P5Q7G1   E9H9W3   T1EDB5   A0A0P5J1L8   A0A139WC92  

PDB

6CQ9     E-value=1.34895e-08,     Score=141

KEGG

101741902    no KO assigned | (RefSeq) TWiK family of potassium channels protein 12-like

GO

GO:0016021   GO:0006811   GO:0005267   GO:0030322   GO:0022841   GO:0005887   GO:0071805   GO:0016020   GO:0015074   GO:0016740   GO:0003676   GO:0004816   GO:0005737   GO:0006421   GO:0016155   GO:0003824  

Length:

316

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

89.5110200000001

Exp number, first 60 AAs:

3.33267

Total prob of N-in:

0.97454

inside

1  -  56

TMhelix

57  -  79

outside

80  -  88

TMhelix

89  -  111

inside

112  -  188

TMhelix

189  -  211

outside

212  -  251

TMhelix

252  -  274

inside

275  -  316

 

 

Pi

32.216882

Theta

164.257812

Tajima's D

-1.330574

CLR

1455.93681

CSRT

0.0843957802109895

Interpretation

Possibly Positive selection