Gene

KWMTBOMO09861

Annotation

retrovirus-related_gag-pol_polyprotein_[Lasius_niger]

Location

Bomo_Chr16(+):10677279-10687038      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.129

CDS

ATGAATCGTAGTGCGCAAATTTTGAAAATGGTGTTCTCTGAAGACCAAGAGAATCCAGTTGTTTATAATAAGCCCATTTTCAGTCCTTTAGATACTGTTCGCAGTCTTGTAAAAAGCGATGTTAATAATATATCAAATTTAAATAGCCACAGTTATGTTTCGGATTCACAAATTGTGCCATATTTTATGAAGAATGATCTACCTGGACCAAATAATGTTGATATGGAACCTACAGTAAATTATTCAGAATCAGTATCAAGTAACCAAATACAACTTTCTGACCTTCAACGTCCACGATTGAATAAAGTAGTTCCAGAATCTAATTGTTCTTCAGAATACAATGATGATAATTCTAAATCTGAATATTCTAATAGTCAAAATGACTTTTCATCTGATGATGTCGATAATGACCCCGATTTTTTATATAAAGATCTTGAATTATCTTCTACATCTGAAGATGAAAGCATCACAATGAGTAATCGGCGAGAAAAAATAATTGAAATTGAACAAGAAAAGAAAAAAGGAAGAAAACGGAGAGCTGTACCCAAAGAATGGAAAAAAAATAAAGCAAAACTATTAAGGAACTCTGGAAAAGCGTATTTATCGTCATCTAAATCAAAAAAGCTAATGAAAGAAAGGGAATTAAAACCAACTTGTAATGATAAGTGTAAACTGAAATGTTTTAATAAGATAAGCGAGGAAAAGCGTCAAATTATTTTTTCGAACTACTGGAAGATGGCAGACTTAGAAAAACAACGTCAGTTCATTAATAAATATGTAAAAGCAATTAAACCTAAATATCGCTATATTCGTGAAGGAAGTACTAGAAAAGATTATAATCACGCATTTTATTTTGAAGTAGACAAAGAAGATATCCGGGTTTGCAAAACATTTTTCAAAAATACATTAGGCATATCAGAGAGACCAATAAGAACGGTGATTTATATGCAAAACTCTGTAGTTGGAGGTTTTCTAGCAGGTGATAACCGAGGGAGACATGGAAACCACAATAAACTTGACAGCACAGTTATTGAAAGGATTAAAGAACACATCAATTCCATTCCTAGAATCGAGAGTCATTACTGTCGGGCTACTACAAGTCGAGAATATATTGAAGGAGGGCTTTCCATTGCGCAATTGCATAGAGACTATGTTGAAAAATGCCGAGCAGAAAGTCGATCGTATGCTGACTATCAAATATATTATAATATATTTAGCAAAGAATATAATATTTCGTTCTGGTCTCCAAAAAAGGACCAATGTGAAGATTGTGCAGCTTATGATAATGCAGAAGATAAACAGCCATTAGAGGACAAGTATTTTTCTCACCTAGAAGAAAAAGACTTAGTCAGGAAAGAAAAAGAACTGGATAAAAAAAATACAAATAATAAATGTATAGCTGCCACCTACGATTTGCAAGCCGTAATGCCATGTCCTAGAGGTGACATCTCCAATTTCTATTACATTTCTAAACTGAACGTACTCAACTTTACCATTTACGAGCTTGGCTCCAAAGATGTGAATTGCTACGTCTGGCACGAAGGTGAGGGATTAAGAGGGAAGATTCACATGCGAGCTATTCTGAAGAAGAATGATTTGTGGGAATACGTATCAGGAAAAATACCGAAACCAATACATTCAGATTCTAAATATTCTGAATGGAATAAAATGGACGGAAAAGCCGAATCGGACATATTGTTAGCTGTCAGCCCGAGCGAGTTAATTGCACTGGATGGTTTAGACTCCTCTAAAGCAATATGGAACAAGTTAAAATCTATGTATGAGTCAAGCGGGCCAGCGCGAAAAGCGTCATTACTAAAGAGACTTGTATTAAATCATATGCCAGAAGATGGAGACCTACGAAAATATATTTCTGATTTTTTCGACTGTGTTAAGAAGCTTAAAGAAATCGGATTGATAGTGATAGATGAGTTGCTTGTTATTTTATTACTTTATAGTTTACCGGATTCGTTCTCAATGTTTCGAACAGCAATGGAATCGCGTGATGATTTACCATCAACTGATGTACTGAAAGTGAAGATTATCGAGGATTATGAAGGTCGGAAGAATAAGATAATAGACCAGAGGGCTATGTTCGTCAAGCGTACCAATATTAAATCAAATGCCAACCCGAAGAAGAACTTCGAACAGCACACAAATAAAAACATTGAGTGCTATCGTTGCGGTCGTCTTGGGCATATGGCGAGAGAATGCAGAACTAAAAACGTGAGTAAGCTTAAACAAAGCTCACATAAAGCAGAATGTAATAGTGATGATGAGCTCAAGACAAATATGTTAGTAAGTACCACCAAGGAGGTGATGATAGCCGAGCAGAGAGCTCCTGTATGGTGTATTGACAGTGGATGTACGGGACATATGTGTAACAACAAACAATTGATTAAAGATTTTACTCGAGTTGATACAGACTTGAATTTGGCTAATGGTAAAACTACAAAAATTAGCGGTTCGGGAAAAGTCAGTATTATGGTAGACATAGGCAGCGAAAAGCACCATGTTGATATTAAAAAAGTGTTCTACGTGTCGGATCTACGAACCAATTTATTATCAGTTGCGAAGATGACAGATCACGGGTTTGAAGTTCGCTTCAATAAAAATTATGCAATTGTCATAGATGACAATAATAAGGTTCATATGCGAGCGGATCGAGTTGGTAACTTATACCACGTCCGAATGAGCCAAGATGATGTCAATAATGTTGAAATGGTGAAAAAACCTATAGATATGTGGCACGAGCGCCTCGGCCACCTTAACGAGCGTGATTTGAAGGCAATGGCAAAAAATGGCCTTGTCCATGGCCTATCATTGAAGGACAACGAAAAATTGTCAGAGTGTGAAATATGTATAAGTGAAAAACAGACATGCACGTCTTTTTCTAAAGGAAGCGAAGATCGTACAAGTGAACTATTGGAGATCGTGCATACTGATGTGTGCGGACCAATGAGACAACAGTCTATGGGCGGTAAAAAGTATTTTGTCACGTTCATCGACGACAAATCAAGATGGTGTGAAGTATACTTTATTGCTAATAAAAGCGACGTACTTCAAGTTTTCAAAGATTACAAGGCTTACGTGGAAAAATTGACAGGAAAGAAGATCAAAAATCTACAATCCGATAACGGTCGAGAATACATTAACAAAGACTTTGATGATTTCTTGAAGAAAGAAAGAATAAGACGGAGGTTGACGGCACCTTATACGCCTCAGCAGAACGGGATTTTGGAGAGAAAGAACAGGACACTGCTGGAGATGGCCCGTTGTATGATGCGTCAGGCGGGAAGCCCTCCTGTTTTTTGGGCTGAAGCAATTAATACTGCTAATTACATAAAGAACCGGTGCCCAACTGCAGCTCTTGATGGTCAAATACCATTTACCCTGTGGACAGGAAAGAAACCTACCGTAATCTACATGCGCGTGTTTGGATCGAAAGCGTATTATAAAAACAAAGGAACGCAGAAGGGAAAATTCGAATCAAGTTCAGAGCTTGGAATATTTATGGGCTATGATACTGAGTCTAAAGCTTACAGAATACATGATCCTAAGACTAGAAGGATCGTCATTTCTCGCGATGTGAAGTTTATGAACGAGACAGCATTCTGTCATGAGTATAAAGAAATACGAAACGATGAAGAACAGAATTTTGATAATTCGAAGATAGTCGTTGAATTGACAGGACATGATCAGAAGAAGGAAGATCGAAAAACAAACCCCATGAGAGGGAGAGGAAGACCAAGGATAGTTCGTACTGGCTTAGTGGGAAGACCGCGCAAAGAGTATAAACCAGCTACTATCAGTACAGAGAGTGAAACTGAATCGGAGTATGAAGTAGATAATGAAGAAACGACAGCTGGAATTGCGATCATTGAACCTAAAACATGGAAAGAAATAGAAAAGACTGATGACGAACCTGAATGGCGAAGGGCTTTAGAAGACGAGTATTTGGCACAATTAAAGAATGTTACATGGGAAATAGTCCCACGACCAAAAAATAGAAAAGTGATTGGTAGCAGATTTGTATTTCAAACAAAGAATACAGGGAAGAAAGTACGGCTTGTCGCAAAGGGATGTTCTCAAAGGCCAGGGGAGGATTTTTACGAAACCTCTTCTCCTGCTGTAAGGTCTTCATCTGTGAGACTCATAGCTGCAGTGTCAGCTGAGTTAGGATTAGAGATGCATCAAATGGATATAGTAACAGCTTACTTGAATGGTACTCTCGAAGAAGATGTATTCATGGAAATACCAGATAAACTATCAGATGTCTTAGAAAGTGTACTAGCAAACCAAAATATTGGATCAAAAAGAAATATTATAAAAGATAAGAATATACTTCATACAGCTAAACGCTGGAACGAAGCATTGAATGAGTGTGAGAATAATGTGTGTTTGTTAAAGAAGTCTTTGTATGGTTTGCGTCAATCAGGATTACAGTGGCATAAAAAGTTAGTAGGAAGGTTGAAGAATATTGGTTTTGAAGCATTACCACAAGAACCTTGTGTGTTTGTTGCGCAAAGGGATGAAAAAATGATGTTAATTGCTATTTATGTAGATGACATTATCCTAGCTACTAATGATGAGGTGTGGTTGCATGATGTTAAGCGTCAGTTATCTAATGCCTTTGAAATGAAGGATATGGGAAAAATCAGTACTTGTTTGGGTATCGAATTTTCACGTGATAAGGAGCATAGAGTGTATTTAAAGCAAGGTGCGTATATAGATAAAATATTAGAGCGTTATGGTATGAGTGATTGTAAACCTATATCAACACCTATGGATGTGAACGTTAAACTAGAAAAACCCAACAGTGTAAACAATGATGTTATGAGTCAGTACCCTTACCCTTATAGGTGCCCTTATCATTGGAAGGCAGCTAAGCGAGTGTTGAGGTATTTGAAAGGTACATCAACTTTCGGCTTAATGTATGAGAGGACAGGTGTACCATTGTTTGGTGTAGTTGATGCAGACTGGGGTGCAAACACGATTGATCGAAGGTCATATTCCGGTTTTGCATTTATTTTAGCAGGTGCCCCAATTACCTGGGAAGCACGAAAACAGCGTACCGTTGCATTATCGAGCACAGAAGCCGAGTACTTGGCGCTTTCTGAAGCAACTAAGGAAGCTATGTATCTCAGAAATGTGGTAAATAATATTGGTGTAAAATGTGGTTGTGTGACATTATTTAATGACAACCAGGGTGCTATGAAGCTTACACAGAATAGAAGCTATCATTCTCGCACTAAGCATATTGATGTTAGACACCATTTTGTTCGAGATATGTGTGAACAGAGTGTGATTGATTTGAAATACTTGAGTACAGACAAAATGCCTGCTGATATTTTGACCAAGGGCTTGTGTGGGATGAAGCATTATGAATGCATGAACAATTTAGGAATGATGGAATAA

Protein

MNRSAQILKMVFSEDQENPVVYNKPIFSPLDTVRSLVKSDVNNISNLNSHSYVSDSQIVPYFMKNDLPGPNNVDMEPTVNYSESVSSNQIQLSDLQRPRLNKVVPESNCSSEYNDDNSKSEYSNSQNDFSSDDVDNDPDFLYKDLELSSTSEDESITMSNRREKIIEIEQEKKKGRKRRAVPKEWKKNKAKLLRNSGKAYLSSSKSKKLMKERELKPTCNDKCKLKCFNKISEEKRQIIFSNYWKMADLEKQRQFINKYVKAIKPKYRYIREGSTRKDYNHAFYFEVDKEDIRVCKTFFKNTLGISERPIRTVIYMQNSVVGGFLAGDNRGRHGNHNKLDSTVIERIKEHINSIPRIESHYCRATTSREYIEGGLSIAQLHRDYVEKCRAESRSYADYQIYYNIFSKEYNISFWSPKKDQCEDCAAYDNAEDKQPLEDKYFSHLEEKDLVRKEKELDKKNTNNKCIAATYDLQAVMPCPRGDISNFYYISKLNVLNFTIYELGSKDVNCYVWHEGEGLRGKIHMRAILKKNDLWEYVSGKIPKPIHSDSKYSEWNKMDGKAESDILLAVSPSELIALDGLDSSKAIWNKLKSMYESSGPARKASLLKRLVLNHMPEDGDLRKYISDFFDCVKKLKEIGLIVIDELLVILLLYSLPDSFSMFRTAMESRDDLPSTDVLKVKIIEDYEGRKNKIIDQRAMFVKRTNIKSNANPKKNFEQHTNKNIECYRCGRLGHMARECRTKNVSKLKQSSHKAECNSDDELKTNMLVSTTKEVMIAEQRAPVWCIDSGCTGHMCNNKQLIKDFTRVDTDLNLANGKTTKISGSGKVSIMVDIGSEKHHVDIKKVFYVSDLRTNLLSVAKMTDHGFEVRFNKNYAIVIDDNNKVHMRADRVGNLYHVRMSQDDVNNVEMVKKPIDMWHERLGHLNERDLKAMAKNGLVHGLSLKDNEKLSECEICISEKQTCTSFSKGSEDRTSELLEIVHTDVCGPMRQQSMGGKKYFVTFIDDKSRWCEVYFIANKSDVLQVFKDYKAYVEKLTGKKIKNLQSDNGREYINKDFDDFLKKERIRRRLTAPYTPQQNGILERKNRTLLEMARCMMRQAGSPPVFWAEAINTANYIKNRCPTAALDGQIPFTLWTGKKPTVIYMRVFGSKAYYKNKGTQKGKFESSSELGIFMGYDTESKAYRIHDPKTRRIVISRDVKFMNETAFCHEYKEIRNDEEQNFDNSKIVVELTGHDQKKEDRKTNPMRGRGRPRIVRTGLVGRPRKEYKPATISTESETESEYEVDNEETTAGIAIIEPKTWKEIEKTDDEPEWRRALEDEYLAQLKNVTWEIVPRPKNRKVIGSRFVFQTKNTGKKVRLVAKGCSQRPGEDFYETSSPAVRSSSVRLIAAVSAELGLEMHQMDIVTAYLNGTLEEDVFMEIPDKLSDVLESVLANQNIGSKRNIIKDKNILHTAKRWNEALNECENNVCLLKKSLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVWLHDVKRQLSNAFEMKDMGKISTCLGIEFSRDKEHRVYLKQGAYIDKILERYGMSDCKPISTPMDVNVKLEKPNSVNNDVMSQYPYPYRCPYHWKAAKRVLRYLKGTSTFGLMYERTGVPLFGVVDADWGANTIDRRSYSGFAFILAGAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLTQNRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLSTDKMPADILTKGLCGMKHYECMNNLGMME

Uniprot

A0A0J7KDR3   A0A224X581   A0A0V1GS48   A0A0V0V098   A0A0V1NJN8   A0A0V0T740   + More
A0A0J7K7M6   A0A0J7KH67   A0A0J7KDV5   A0A0J7KDP1   W8B6G9   A0A069DXI1   W8AYT4   B6V6Z8   W8BWJ0   A0A0A1XLZ7   W8BYI7   A0A0A1X768   A0A0K8W4G0   A0A0A1WFC7   W8ADM5   A0A194RJV9   W8AQ86   A0A0K8U6S2   W8AL23   A0A194RU38   B8YLY4   B8YLY6   B8YLY3   B8YLY5   A0A151R6U8   A0A2N9ETC8   A0A0V0RWJ3   A0A2N9H4V1   A0A2N9FWL6   A0A182GA29   T1PKV2   A0A251TN47   A0A2N9IGN3   Q53ND1   A0A2N9GA80   A0A2N9HZ75   A0A2N9GHK3   A0A251TCA0   A0A151S6I6   A0A251VAZ6   A0A2N9EE21   A0A438H9V6   A0A438GNT7   A0A438CJT7   A0A438JSJ2   A0A2N9I6N4   A0A438DJP4   A0A438H767   A0A438DYX7   A0A438GBI6   A0A438CRS1   A5AS37   Q6AUC7   A0A2N9IKI1   A0A438H787   A0A438FRF7   K7JAW3   A0A2N9GHK9   A0A151T355   A0A438EB27   A0A438CJY5   A5B5N4  

Pubmed

24495485    26334808    25830018    26354079    19656907    22057054    + More
26483478    28538728    16188032    30458008    20075255   

EMBL

LBMM01008999    LBMM01007721    KMQ88472.1    KMQ89488.1    GFTR01008771    JAW07655.1    + More
JYDP01000350    KRZ01021.1    JYDN01000113    KRX56900.1    JYDM01000185    KRZ84108.1    JYDJ01000518    KRX34768.1    LBMM01012368    KMQ86259.1    LBMM01007580    KMQ89607.1    LBMM01008805    KMQ88628.1    LBMM01008884    KMQ88558.1    GAMC01013937    JAB92618.1    GBGD01000131    JAC88758.1    GAMC01015163    JAB91392.1    FJ238509    ACI62137.1    GAMC01008929    JAB97626.1    GBXI01002679    JAD11613.1    GAMC01008189    JAB98366.1    GBXI01007143    JAD07149.1    GDHF01006360    JAI45954.1    GBXI01017107    JAC97184.1    GAMC01020355    JAB86200.1    KQ460297    KPJ16236.1    GAMC01018338    JAB88217.1    GDHF01030254    JAI22060.1    GAMC01019998    JAB86557.1    KQ459875    KPJ19636.1    FJ544853    ACL97384.1    FJ544856    ACL97386.1    FJ544851    ACL97383.1    FJ544854    ACL97385.1    KQ484038    KYP38095.1    OIVN01000557    SPC82046.1    JYDL01000068    KRX18751.1    OIVN01002854    SPD06945.1    OIVN01001534    SPC95017.1    JXUM01155348    KQ572178    KXJ68066.1    KA648745    AFP63374.1    CM007899    OTG12557.1    OIVN01005591    SPD23209.1    AC134048    DP000010    AAX92941.1    ABA91548.1    OIVN01001666    SPC96375.1    OIVN01004379    SPD17029.1    OIVN01002247    SPD01987.1    CM007900    OTG08534.1    KQ483456    KYP50361.1    CM007892    OTG31811.1    OIVN01000036    SPC73022.1    QGNW01000255    RVW81243.1    QGNW01000381    RVW73873.1    QGNW01002195    RVW23445.1    QGNW01000029    RVX11927.1    OIVN01004879    SPD19723.1    QGNW01001602    RVW35576.1    QGNW01000267    RVW80348.1    QGNW01001457    RVW40577.1    QGNW01000493    RVW69546.1    QGNW01002058    RVW25839.1    AM433482    CAN69340.1    AC129717    AAT85194.1    OIVN01002424    OIVN01005946    SPD03496.1    SPD24589.1    RVW80345.1    QGNW01000769    RVW62538.1    AAZX01023229    OIVN01001931    SPC99063.1    CM003610    KYP61490.1    QGNW01001343    RVW44710.1    QGNW01002193    RVW23526.1    AM447500    CAN74198.1   

Proteomes

UP000036403    UP000055024    UP000054681    UP000054924    UP000055048    UP000053240    + More
UP000075243    UP000054630    UP000069940    UP000249989    UP000215914    UP000288805    UP000002358   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF14244   Retrotran_gag_3
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00098   zf-CCHC
PF13855   LRR_8
PF03106   WRKY
PF03159   XRN_N
PF17846   XRN_M

Interpro

IPR029472   Copia-like_N        + More
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR025314   DUF4219       
IPR036875   Znf_CCHC_sf       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       
IPR004859   Put_53exo       
IPR041412   Xrn1_helical       
IPR027073   5_3_exoribonuclease       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF118290   SSF118290       

Gene 3D

3.30.420.10     2.20.25.80     3.80.10.10    

ProteinModelPortal

A0A0J7KDR3   A0A224X581   A0A0V1GS48   A0A0V0V098   A0A0V1NJN8   A0A0V0T740   + More
A0A0J7K7M6   A0A0J7KH67   A0A0J7KDV5   A0A0J7KDP1   W8B6G9   A0A069DXI1   W8AYT4   B6V6Z8   W8BWJ0   A0A0A1XLZ7   W8BYI7   A0A0A1X768   A0A0K8W4G0   A0A0A1WFC7   W8ADM5   A0A194RJV9   W8AQ86   A0A0K8U6S2   W8AL23   A0A194RU38   B8YLY4   B8YLY6   B8YLY3   B8YLY5   A0A151R6U8   A0A2N9ETC8   A0A0V0RWJ3   A0A2N9H4V1   A0A2N9FWL6   A0A182GA29   T1PKV2   A0A251TN47   A0A2N9IGN3   Q53ND1   A0A2N9GA80   A0A2N9HZ75   A0A2N9GHK3   A0A251TCA0   A0A151S6I6   A0A251VAZ6   A0A2N9EE21   A0A438H9V6   A0A438GNT7   A0A438CJT7   A0A438JSJ2   A0A2N9I6N4   A0A438DJP4   A0A438H767   A0A438DYX7   A0A438GBI6   A0A438CRS1   A5AS37   Q6AUC7   A0A2N9IKI1   A0A438H787   A0A438FRF7   K7JAW3   A0A2N9GHK9   A0A151T355   A0A438EB27   A0A438CJY5   A5B5N4  

KEGG

105841614    no KO assigned | (RefSeq) uncharacterized LOC105841614

GO

GO:0003676   GO:0008270   GO:0015074   GO:0000943   GO:0003700   GO:0043565   GO:0003964   GO:0004527   GO:0016740   GO:0004816   GO:0005737   GO:0006421   GO:0016155   GO:0003824  

PANTHER

PTHR11439   PTHR12341  

Subcellular location

Nucleus  

Length:

1805

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03178

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00092

outside

1  -  1805

 

 

Pi

184.689013

Theta

198.468905

Tajima's D

0

CLR

1144.325223

CSRT

0.365931703414829

Interpretation

Uncertain