Silkworm Genome Informatics Database

Gene

KWMTBOMO09840

Pre Gene Modal

BGIBMGA013132

Annotation

PREDICTED:_T-box_transcription_factor_TBX1-like_[Amyelois_transitella]

Location

Bomo_Chr16(+):10122533-10143214 View in EpiBrowser

Transcription factor

T-box

Location in the cell

Nuclear Reliability : 3.649

CDS

ATGATCGGTGTGTCGGCAAGTCAGTGCCCGCGGAGTAGCAGCGGATTCATTTTGTCACAATCGTTGGTGGAGAGGCTCGGACGAGATCACGAACAGCCGGGTCTACCTACCCTGCATCATCCCATCAGAGATAATTCGACATGCGAACGCAGTGCGTATTCGCCGCTTCAGGCACTCAGCGAGAGTACTTGCCGGGACCACGGCGCGCAGCCGGCGCCTCCACCGCAACCGACCTTACCGCGAGTTCAAAGTTCGTCGCAAAATGTGACGCTTCACCCGGCGGTGTCGCGATGCACGGCGACCCTCGAGCTGGCGGCTCTCTGGCGCAGCTTCCACGAGCTGGGCACAGAGATGATAGTCACGAAGGCCGGGAGGCGGATGTTCCCAGCGCTGCAGGCCAGGCTGGGGGGGTTACTGCCCAACGCCCAGTACCTACTGCTGGTCGACTTCGTGCCGCTGGATGATAAACGATATCGTTACGCTTTCCACAGCTCCAGCTGGGTGGTGGCGGGTAAAGCTGACCCGATATCTCCGCCCAGGTTCCACCTGCACCCGGACTCGCCGGCCCCAGGCTCGCATTGGATGCGCCAGCTCGTCTCCTTCGACAAACTCAAGCTCACCAACAACCAGCTCGACGACAACGGACATATTATCCTGAACTCTATGCACCGCTACCAGCCGCGTTTGCACGTGGTGTACCTCCCCGGCGAAGGCCAGGCCGCTACTCCGGGCACGGTGCCCTACAGGACGTTCGTGTTCCCGGAGACCGGCTTCACGGCGGTCACGGCCTACCAGAACCACAGGATAACCCAGCTCAAGATAGCCAGCAATCCGTTCGCAAAAGGTTTTAGAGATTGCGACCCCGACGACTGTCCACCCGAGCAGAGTCAGCAACGTGGGAGCACTCCCCGGCGCCGCGAGTCAGCGCCGGAGCCGTGCTCACAGCTGGCCCAGCCCTACGGCGGCGAGCCCAGTACCTGCGGCCCTCTCTACGCCGCACACACTCACCCCATGCGATATCAACCACATTCGAGCCACAACAGCGCGTACAGTGCTTACTACGCTCATAGTGAATTTTATTAG

Protein

MIGVSASQCPRSSSGFILSQSLVERLGRDHEQPGLPTLHHPIRDNSTCERSAYSPLQALSESTCRDHGAQPAPPPQPTLPRVQSSSQNVTLHPAVSRCTATLELAALWRSFHELGTEMIVTKAGRRMFPALQARLGGLLPNAQYLLLVDFVPLDDKRYRYAFHSSSWVVAGKADPISPPRFHLHPDSPAPGSHWMRQLVSFDKLKLTNNQLDDNGHIILNSMHRYQPRLHVVYLPGEGQAATPGTVPYRTFVFPETGFTAVTAYQNHRITQLKIASNPFAKGFRDCDPDDCPPEQSQQRGSTPRRRESAPEPCSQLAQPYGGEPSTCGPLYAAHTHPMRYQPHSSHNSAYSAYYAHSEFY

Uniprot

A0A2A4K4Y1 A0A2H1V7S3 A0A437BU09 A0A194PKE2 A0A212F268 A0A0N0PAR8 + More
D2A4Q2 A0A067QU66 A0A1Y1LKM9

Pubmed

26354079 22118469 18362917 19820115 24845553 28004739 + More

EMBL

NWSH01000156 PCG78968.1 ODYU01000872 SOQ36294.1 RSAL01000008 RVE53962.1 + More
KQ459602 KPI93199.1 AGBW02010783 OWR47835.1 KQ461178 KPJ07764.1 KQ971344 EFA05715.1 KK853259 KDR09232.1 GEZM01057035 JAV72495.1

Proteomes

UP000218220 UP000283053 UP000053268 UP000007151 UP000053240 UP000007266 + More
UP000027135

Pfam

PF00907 T-box

Interpro

IPR036960   T-box_sf        + More
IPR018186   TF_T-box_CS
IPR001699   TF_T-box
IPR008967   p53-like_TF_DNA-bd

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.820

CDD

cd00182 TBOX

ProteinModelPortal

A0A2A4K4Y1 A0A2H1V7S3 A0A437BU09 A0A194PKE2 A0A212F268 A0A0N0PAR8 + More
D2A4Q2 A0A067QU66 A0A1Y1LKM9

PDB

4A04 E-value=1.73624e-78, Score=744

KEGG

101746193 K10175 T-box protein 1 | (RefSeq) T-box transcription factor TBX1-like

GO

GO:0003677 GO:0005634 GO:0003700 GO:0006355 GO:0006418 GO:0003676 GO:0004816 GO:0005737 GO:0006421 GO:0016155 GO:0003824

PANTHER

PTHR11267

Subcellular location

Nucleus

Length:

360

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07221

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01017

outside

1 - 360

Pi

235.956399

Theta

17.678807

Tajima's D

1.323473

CLR

0.234814

CSRT

0.753562321883906

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics