Gene

KWMTBOMO09838  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013133

Annotation

PREDICTED:_asparagine--tRNA_ligase?_cytoplasmic_[Papilio_xuthus]

Location

Bomo_Chr16(-):10069972-10079872      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.435

CDS

ATGCCGGACGTTGGAAACCTTAGCTTGTCCGAGATATATACCTCGGATAAGAATGGCAATGACGATACAGGTGATGGTACGAAAGAGAAACCATTCAAGACAATATTGAAAGCAATGCATCATGCTGGCAAAGAGCCATTTCCCACAATTTATGTTGACTCAAAAGATGACACTAAGGATTATGATGTAGCAGCAAAATCTCAATTGAAGAAAATCCAAAAGATTTGGGTCCGCGAGAACTATAAGGCGATGGACAAAGCTAAGGCAGAAGAGGAGAACACTGAAAAGAGATCTCAAAACTTAGATGAGGCAAAGAAGATTCTTCTGCAAGAGGATCCAAGTTTACCAAAGGCCACTGTTGTGAAAATATGTGAAACAACTGAACACCGTGGTCAGAGGATATGCATCAGAGGATGGGTACATCGTCTCCGGCGCCAAGGTAAATCTCTGGCATTCCTGACCCTGCGTGATGGCACTGGGTACCTACAGTGCGTTCTACATGGTTTACTATGTCAGACCTACAATGCTCTAGTCCTATCTACGGAGTCATCTGTGGTCTTGTATGGAAAATTAGAGGCTGTGCCCGAGGGAAAGAAGGCTCCGGGTGGTCATGAGCTGACAGCTGATTACTGGGAATTGATTGGACTCGCACCACCAGGTGGTGCTGACGCCATCCTCAATGAGGAAGCCTTGCCTGACGTGCAATTAGACAATAGGCACATAATGATCCGCGGTGAGAACACGTCCAAAGTCCTACGGGCTCGCGCCGCTGTGACTCGCGCCTTCCGTGAACATTTCGCTTCCCGCCGCTACACAGAAGTCACGCCACCGACCCTGGTTCAAACGCAGTGCGAAGGCGGCAGTACCCTTTTCAAGTTTAGTTACTTCGGGGAAGAAGCTTATCTAACTCAAAGCTCTCAGCTGTACCTGGAAACGTGTCTGGCGACCCTGGGCGACGTTTACTGCATCGCTCAGTCGTACCGAGCGGAGCAGTCTCGCACGAGGAGACATCTTGCCGAGTACAGTCACGTGGAAGCTGAGTGCCCCTTCATAACGTTTGAAGATCTGTTAAGTCGGCTCGAGGATCTGGTCGTGGATGTCGTGGACCGGGTCCTGGCCTCGCCCGAAGGACAGCTCGTATACGAACTCAACCCGAACTTTAAAAAACCACAGAAACCTTTCAAACGTATGACGTATATAGAAGCGATAGAGTATCTCCGCGCCAACAACATTACGAAGGAAGACGGATCCTTCTACGAGTTTGGAGAGGACATCCCGGAAATGCCAGAGCGGAAGATGACGGACGCCATTGGCGTGCCGATACTGCTGTGCAAGTTCCCGGCCGAGATCAAGTCGTTCTACATGTCGCGCTGCGTGGACGACCGCCGCCTCACCGAGTCCGTCGACGTGCTGATGCCGGGCGTCGGGGAGATCGTCGGCGGCTCCATGAGGATATGGGACCACGAGGAGCTGATGGAAGGTTACAAGCGCGAAGGCATCGACCCTAGCCCGTACTACTGGTATACGGACCAGCGCAAGTTCGGCTCGGTGCCTCACGGCGGCTACGGGCTGGGTTTGGAGCGCTTCCTCTGCTGGCTCCTGGACCGGTACCACATCCGGGACGTGTGTCTCTACCCTCGCTTCCTAGAGCGGTGCACGCCCTGA

Protein

MPDVGNLSLSEIYTSDKNGNDDTGDGTKEKPFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHGLLCQTYNALVLSTESSVVLYGKLEAVPEGKKAPGGHELTADYWELIGLAPPGGADAILNEEALPDVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYTEVTPPTLVQTQCEGGSTLFKFSYFGEEAYLTQSSQLYLETCLATLGDVYCIAQSYRAEQSRTRRHLAEYSHVEAECPFITFEDLLSRLEDLVVDVVDRVLASPEGQLVYELNPNFKKPQKPFKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP

Uniprot

H9JUC0   A0A2A4K8A1   A0A2H1VNU9   A0A3S2LUE3   S4PXY2   A0A194PJI0   + More
A0A212FMS2   A0A1B6GQ09   A0A1B6LWV7   A0A411G656   A0A2J7QXF9   Q175Q3   E2AI73   A0A084VZB2   A0A195F8V8   B4N150   A0A1B0CAN7   A0A067QZX4   A0A1Q3F5S6   A0A195BNM5   A0A1Y9HDX7   A0A023EWG2   U5ETV1   A0A1W4W8L9   U4TWR4   A0A182NDW2   A0A182WRQ3   A0A182LG02   Q7QD57   A0A182HU25   K7IWK2   A0A182JUP6   A0A182UHX8   A0A182V5X8   A0A026VWF6   Q9V434   A0A182XWD2   A0A151IDC7   B0X7G0   B4PAH6   B3MNN8   B4M939   A0A182M3S2   A0A240PLF8   A0A2M4A2U5   E0VDF9   A0A3B0KK54   A0A1Y9IW12   B3NM86   B4Q9H2   A0A2J7QXG4   D0QWD0   A0A182P6N7   Q29CK6   B4I5S1   D6X3U4   A0A158N9P5   J3JY66   W5JND0   B4KKG0   A0A1L8EGP4   A0A1L8EH44   A0A151XGL6   A0A1A9W043   D3TML7   A0A2M3ZGT1   A0A1A9V9K3   A0A1L8EH34   A0A2M4BJ37   A0A182FNN8   A0A0M4EMA9   A0A2M4BJV9   A0A2M4A2D0   A0A1L8EGX0   A0A1Y1KPZ5   A0A1I8N773   A0A1B0A533   A0A0P4VS74   A0A2M3Z477   T1PBC7   A0A1L8EGR8   A0A1A9XGT9   A0A1B0B7M1   A0A2M4A203   A0A1L8DS40   A0A0L0BTI5   A0A1B0BJG0   A0A069DVE2   A0A182QE81   A0A2H8TKU6   T1IAP3   A0A0K8UIG4   A0A2S2Q3T2   V5GVI4   A0A1B6DJG9   J9JXG3   A0A1I8Q9Z9   V4AZ14   A0A182GT99   T1DJN3  

Pubmed

19121390    23622113    26354079    22118469    17510324    20798317    + More
24438588    17994087    24845553    24945155    26483478    23537049    20966253    12364791    14747013    17210077    20075255    24508170    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    17550304    20566863    22936249    19859648    15632085    18362917    19820115    21347285    22516182    20920257    23761445    20353571    28004739    25315136    27129103    26108605    26334808    23254933   

EMBL

BABH01038527    BABH01038528    NWSH01000035    PCG80451.1    ODYU01003558    SOQ42476.1    + More
RSAL01000008    RVE53972.1    GAIX01004243    JAA88317.1    KQ459602    KPI93193.1    AGBW02007651    OWR55027.1    GECZ01031543    GECZ01005243    JAS38226.1    JAS64526.1    GEBQ01011830    JAT28147.1    MH365549    QBB01358.1    NEVH01009381    PNF33268.1    CH477396    EAT41839.1    GL439655    EFN66872.1    ATLV01018673    KE525245    KFB43306.1    KQ981727    KYN36647.1    CH963920    EDW78032.1    AJWK01004132    KK853055    KDR11987.1    GFDL01012182    JAV22863.1    KQ976428    KYM87829.1    JXUM01065285    JXUM01065286    JXUM01065287    GAPW01000799    KQ562340    JAC12799.1    KXJ76111.1    GANO01001746    JAB58125.1    KB631671    ERL85252.1    AAAB01008859    EAA07595.3    APCN01000602    KK107928    EZA47154.1    AF181634    AE014134    AAD55420.1    AAF53768.1    AGB93096.1    KQ977991    KYM98279.1    DS232451    EDS41910.1    CM000158    EDW90384.1    CH902620    EDV31125.1    CH940654    EDW57715.1    AXCM01004068    GGFK01001731    MBW35052.1    DS235075    EEB11415.1    OUUW01000010    SPP85521.1    CH954179    EDV54686.1    CM000361    CM002910    EDX05479.1    KMY90952.1    PNF33270.1    FJ821025    ACN94629.1    CH475456    EAL29381.1    CH480822    EDW55727.1    KQ971326    EEZ97370.1    ADTU01009727    APGK01032934    BT128190    KB740857    AEE63151.1    ENN78616.1    ADMH02001019    ETN64390.1    CH933807    EDW11610.1    GFDG01000897    JAV17902.1    GFDG01000886    JAV17913.1    KQ982169    KYQ59539.1    EZ422669    ADD18945.1    GGFM01007026    MBW27777.1    GFDG01000896    JAV17903.1    GGFJ01003938    MBW53079.1    CP012525    ALC42867.1    GGFJ01003937    MBW53078.1    GGFK01001571    MBW34892.1    GFDG01000895    JAV17904.1    GEZM01081830    JAV61516.1    GDKW01001300    JAI55295.1    GGFM01002554    MBW23305.1    KA646042    AFP60671.1    GFDG01000882    JAV17917.1    JXJN01009687    GGFK01001515    MBW34836.1    GFDF01004887    JAV09197.1    JRES01001366    KNC23331.1    JXJN01015380    GBGD01001039    JAC87850.1    AXCN02001586    GFXV01002959    MBW14764.1    ACPB03022079    GDHF01025822    JAI26492.1    GGMS01003166    MBY72369.1    GALX01004223    JAB64243.1    GEDC01011828    GEDC01011538    JAS25470.1    JAS25760.1    ABLF02038075    KB200750    ESP00346.1    JXUM01017527    KQ560486    KXJ82172.1    GAMD01001361    JAB00230.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000235965    + More
UP000008820    UP000000311    UP000030765    UP000078541    UP000007798    UP000092461    UP000027135    UP000078540    UP000075900    UP000069940    UP000249989    UP000192221    UP000030742    UP000075884    UP000076407    UP000075882    UP000007062    UP000075840    UP000002358    UP000075881    UP000075902    UP000075903    UP000053097    UP000000803    UP000076408    UP000078542    UP000002320    UP000002282    UP000007801    UP000008792    UP000075883    UP000075880    UP000009046    UP000268350    UP000075920    UP000008711    UP000000304    UP000075885    UP000001819    UP000001292    UP000007266    UP000005205    UP000019118    UP000000673    UP000009192    UP000075809    UP000091820    UP000078200    UP000069272    UP000092553    UP000095301    UP000092445    UP000092443    UP000092460    UP000037069    UP000075886    UP000015103    UP000007819    UP000095300    UP000030746   

PRIDE

H9JUC0   

Pfam

PF01336   tRNA_anti-codon        + More
PF00152   tRNA-synt_2
PF09494   Slx4
PF00271   Helicase_C
PF00570   HRDC
PF00270   DEAD
PF16124   RecQ_Zn_bind
PF09382   RQC
PF04265   TPK_B1_binding
PF04263   TPK_catalytic

Interpro

IPR006195   aa-tRNA-synth_II        + More
IPR002312   Asp/Asn-tRNA-synth_IIb       
IPR004522   Asn-tRNA-ligase       
IPR012340   NA-bd_OB-fold       
IPR004365   NA-bd_OB_tRNA       
IPR004364   aa-tRNA-synt_II       
IPR018574   Structure-sp_endonuc_su_Slx4       
IPR004589   DNA_helicase_ATP-dep_RecQ       
IPR010997   HRDC-like_sf       
IPR027417   P-loop_NTPase       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR032284   RecQ_Zn-bd       
IPR014001   Helicase_ATP-bd       
IPR018982   RQC_domain       
IPR036388   WH-like_DNA-bd_sf       
IPR001650   Helicase_C       
IPR002121   HRDC_dom       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011333   SKP1/BTB/POZ_sf       
IPR007371   TPK_catalytic       
IPR007373   Thiamin_PyroPKinase_B1-bd       
IPR036371   TPK_B1-bd_sf       
IPR036759   TPK_catalytic_sf       
IPR006282   Thi_PPkinase       

SUPFAM

SSF50249   SSF50249        + More
SSF47819   SSF47819       
SSF52540   SSF52540       
SSF54695   SSF54695       
SSF63999   SSF63999       
SSF63862   SSF63862       

Gene 3D

1.10.10.10     3.40.50.10240    

CDD

cd00079  HELICc
cd07995  TPK

ProteinModelPortal

H9JUC0   A0A2A4K8A1   A0A2H1VNU9   A0A3S2LUE3   S4PXY2   A0A194PJI0   + More
A0A212FMS2   A0A1B6GQ09   A0A1B6LWV7   A0A411G656   A0A2J7QXF9   Q175Q3   E2AI73   A0A084VZB2   A0A195F8V8   B4N150   A0A1B0CAN7   A0A067QZX4   A0A1Q3F5S6   A0A195BNM5   A0A1Y9HDX7   A0A023EWG2   U5ETV1   A0A1W4W8L9   U4TWR4   A0A182NDW2   A0A182WRQ3   A0A182LG02   Q7QD57   A0A182HU25   K7IWK2   A0A182JUP6   A0A182UHX8   A0A182V5X8   A0A026VWF6   Q9V434   A0A182XWD2   A0A151IDC7   B0X7G0   B4PAH6   B3MNN8   B4M939   A0A182M3S2   A0A240PLF8   A0A2M4A2U5   E0VDF9   A0A3B0KK54   A0A1Y9IW12   B3NM86   B4Q9H2   A0A2J7QXG4   D0QWD0   A0A182P6N7   Q29CK6   B4I5S1   D6X3U4   A0A158N9P5   J3JY66   W5JND0   B4KKG0   A0A1L8EGP4   A0A1L8EH44   A0A151XGL6   A0A1A9W043   D3TML7   A0A2M3ZGT1   A0A1A9V9K3   A0A1L8EH34   A0A2M4BJ37   A0A182FNN8   A0A0M4EMA9   A0A2M4BJV9   A0A2M4A2D0   A0A1L8EGX0   A0A1Y1KPZ5   A0A1I8N773   A0A1B0A533   A0A0P4VS74   A0A2M3Z477   T1PBC7   A0A1L8EGR8   A0A1A9XGT9   A0A1B0B7M1   A0A2M4A203   A0A1L8DS40   A0A0L0BTI5   A0A1B0BJG0   A0A069DVE2   A0A182QE81   A0A2H8TKU6   T1IAP3   A0A0K8UIG4   A0A2S2Q3T2   V5GVI4   A0A1B6DJG9   J9JXG3   A0A1I8Q9Z9   V4AZ14   A0A182GT99   T1DJN3  

PDB

5XIX     E-value=0,     Score=1709

KEGG

101742209    K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] | (RefSeq) asparagine--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004816   GO:0003676   GO:0006421   GO:0033557   GO:0006260   GO:0006281   GO:0017108   GO:0043140   GO:0006310   GO:0005737   GO:0030975   GO:0009229   GO:0006772   GO:0004788   GO:0000166   GO:0004812   GO:0006418   GO:0016155   GO:0003824  

Length:

554

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.014

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00026

outside

1  -  554

 

 

Pi

176.235485

Theta

165.645253

Tajima's D

0.674756

CLR

0.319337

CSRT

0.565921703914804

Interpretation

Uncertain