SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09820
Pre Gene Modal
BGIBMGA013122
Annotation
PREDICTED:_zinc_finger_protein_135-like_isoform_X2_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.296
 

Sequence

CDS
ATGGATAAATGTGGAGAATGTTTGATACCGGCTGAGCAATTATTCGAGACGGGCAAAGATGGAGTTTATGCATGTTTCAAATGTCAACCCTTAGTACCTGAAGTGTCCATTGGAGAAAGCAGTACAGAACAACACAATACATCACAGTCCACAAATGATGAGAAGAATGCACAGTTGCAGAACCACTTACGTCACCATCGTGCCGAGAGACGATTCGTCTGTGCCTTCTGTAATAAAGCGTTTTCCCAGTCAAATAATTTGAGGGCGCATCTTCGTATCCACACAAATGAGAGGCCGTTCAAATGTAGCGAATGCGGGAAGGCTTTTACACAGTTAACAAATCTGAATAACCACGTGAGACTTCACACCGGCGAGCGTCCCTTCGTGTGTCCCGAGCCTGGCTGCGATAAAGCGTACGCACAGGTGACGAACTTGAACCAGCATCGGAAACGTCACTTGAGCGGGCGGCCCGTGGAGTCCACGTACGACTGCACCGTGTGCGGCGAGTCCTTCCAGCAACGGAATCAGATGTACACTCACAGACGTGAAGTTCACGGGGAATTGAAGAGTCCGATGCGCGTCGCCAATCAGCGGCGAGCTTGCACGCTGTGCGACATGACGTTCCCCAACGAGCGCCTGCTGCTGCAGCACGCGGCGCAGCACCTCGCCCCGCACCTCGCCCCGCACCCCGCCCCGCACCGCGGCGCCGACGACGTCGATGACAACAAGTGCCTCTACCCGTGCGTGTTCTCGTCGTGCTCGGCGCGCCTGCCCTCCCCGCGCGCGCACACCGAGCACCTGCTGGCCGCGCACCAGCTGCGCGTGCTCGCCGCGCACGACGCGCGCCCGCCGCGCCGGGGACGCCCGCCCAAGATGTTGAAAGAAGACCCCTTGGACCTGAAAGACAACACCCAATTTCACGAGGTGACGATAATCAAACATTCGCAGCGGCAGTTGCCCAAACTGAAAGTGCAGAGTTTATTCCAATGA
Protein
MDKCGECLIPAEQLFETGKDGVYACFKCQPLVPEVSIGESSTEQHNTSQSTNDEKNAQLQNHLRHHRAERRFVCAFCNKAFSQSNNLRAHLRIHTNERPFKCSECGKAFTQLTNLNNHVRLHTGERPFVCPEPGCDKAYAQVTNLNQHRKRHLSGRPVESTYDCTVCGESFQQRNQMYTHRREVHGELKSPMRVANQRRACTLCDMTFPNERLLLQHAAQHLAPHLAPHPAPHRGADDVDDNKCLYPCVFSSCSARLPSPRAHTEHLLAAHQLRVLAAHDARPPRRGRPPKMLKEDPLDLKDNTQFHEVTIIKHSQRQLPKLKVQSLFQ

Summary

Pfam
PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR022755   Znf_C2H2_jaz       
SUPFAM
SSF57667   SSF57667       
PDB
2I13     E-value=8.20374e-23,     Score=264

Ontologies

Topology

Length:
329
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01177
outside
1  -  329
 
 

Population Genetic Test Statistics

Pi
20.832802
Theta
21.031846
Tajima's D
0.545169
CLR
0.448172
CSRT
0.530273486325684
Interpretation
Uncertain
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