Gene

KWMTBOMO09818  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013121

Annotation

PREDICTED:_polymerase_delta-interacting_protein_2_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr16(+):9797599-9811630      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.079

CDS

ATGATGGAGTTGTTGTTGAGATTTGCATCATCAAATCCACTACGATTGACTGCTTCTAGACTCTTGTTAACTCACGTAGCACATTATACCAGATTGGCAGAAGTTGGGAAACTCGAATCTCCTAAAACCTCGGGCAAATATGACACAGGACAGTTAATATTGCATAAAGTGTTTGGATATCGTGGAGTGATACTTTTTCCATGGCTTGCAAGGGTTTACGATCGCGATGCTACAAATAAGAAGGAGAGTCCTGATAATTCCACATCTGAAACATCGGGCGATAGCTTGACGAATGCGGGAAAAGAAGTTAAAGGCAGGACACATACATTCTATCAAGTTCTCATAGACACTAGGGATGCTCCATATATAATATTTTGTGTTGATTCTCCAAATTCAGCGATATTAAAAGCAATTATATTTTTGTCTTTACAAACAAACATCGACATGAGGCCTGAATGGAAGAAAAAGAGAGCTCAAACTGAAGCGGTCACGTTCCTAGGCAACCAAGAATCTAGTCGAAGCCTATATGCGATCCCCGGTCTCGACTATGTAGCTCACGACGATATTATACCTTATGCCTCTGTAGAAAGGGTTCCCCTACAGCATGAGCTCTTCGATAAATTCCTAATGCACAATCCTGATAAAGATCCGCCGTTCATTGCCCAAGAGACCCTGCGGGCGTGGCAGAAGAAGAACCATCCTTGGTTAGAGCTCAGCGACGTGCACAGGGAGACGACGGAAGGTGTTAGAGTCACCGTGATACCGTTCTATATGGGGAGTCGCGAGTCGCAGAACTCGGCTGTCTATTGGTGGCGCTACTGCATCCGGTTGGAGAACCTCGGCGCGCAGGCCGTCCAGCTCCGCGAGCGACACTGGCGCATCTTCTCGCTCAGCGGCACCCTGGAGACGGTGCGGGGCCGCGGCGTGGTGGGGCAGGAGCCCGTGCTCGCGAGGCACGCCCCCGCCTTCCAGTACAGCAGCCACGTCAGCCTGCAGGCCCCCAGCGGCCATATGTGGGGCACGTTTAGGATGGAGCGCGAAGACGGCTACACGTTCGACTGCCGCATCCCGCCCTTCTCCCTTGAGAGCAAGCCCGACGAGACCGCACCCCCCGCCCCTCCCGCGTGA

Protein

MMELLLRFASSNPLRLTASRLLLTHVAHYTRLAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYIIFCVDSPNSAILKAIIFLSLQTNIDMRPEWKKKRAQTEAVTFLGNQESSRSLYAIPGLDYVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPWLELSDVHRETTEGVRVTVIPFYMGSRESQNSAVYWWRYCIRLENLGAQAVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSGHMWGTFRMEREDGYTFDCRIPPFSLESKPDETAPPAPPA

Uniprot

H9JUA8   S4PZ62   A0A2H1V2E1   A0A194QI79   A0A3S2M3R2   A0A2A4K957   + More
A0A212F288   A0A0N1I879   A0A067QZK5   A0A1W4WNL8   A0A026WX96   F4WVU3   A0A195FAQ3   E2AQ61   D2A413   A0A023GIQ6   G3MS82   A0A232EHS2   A0A151XIK8   A0A182L8C6   A0A182UJQ8   A0A182XP06   A0A182V4V4   A0A0C9RMF3   A0A182VW68   A0A182HK48   A0A195BRF2   A0A158NF72   Q7PUT4   E0VUV5   A0A0J7KQD3   A0A182RFZ2   A0A1L8DF82   L7MB53   A0A1Y1NFN5   A0A182MH23   A0A131YUR1   E9INF6   J3JUM9   A0A182FS93   E2B4H8   A0A1E1XAI4   A0A131X9N0   A0A182NQY6   A0A224YVD7   A0A182JT91   A0A2M3Z6Q5   A0A2M3Z6Z4   Q16QZ1   B0X1Q0   A0A084W0J0   A0A1B0GJX4   U5EWR1   A0A182IPN2   B7PZS2   A0A151IMT8   A0A0K8RQW8   A0A131Y0C8   A0A2M4ADX8   A0A2M4ADY3   A0A2M4CZ10   A0A2M4CYZ9   A0A182YND4   A0A182H620   A0A3Q0IID8   A0A3R7PSE4   A0A182Q6T8   A0A2M4BPG3   A0A182PR87   A0A1Q3FH13   A0A2M4BPE9   A0A293MZX9   A0A2M4BPJ0   A0A2J7RI27   A0A2R5LKU7   U4U6G0   A0A023EQ73   N6T4M6   T1J2K2   A0A0P4W8S8   A0A182TA92   A0A336MQP7   A0A0P4VWH3   A0A2A3EI49   V9IJJ1   A0A1B6IXV3   A0A023EQ42   A0A2H8TYK1   A0A0A9WS77   A0A293N1M6   A0A443QXF0   A0A3S5WGU4   E9HLT2   A0A0P5U4B1   A0A0P5FI37   A0A0P6D149   A0A0P5TL24   A0A1D2NBR1   A0A0P5F430   A0A0P4XPL4  

Pubmed

19121390    23622113    26354079    22118469    24845553    24508170    + More
30249741    21719571    20798317    18362917    19820115    22216098    28648823    20966253    21347285    12364791    14747013    17210077    20566863    25576852    28004739    26830274    21282665    22516182    28503490    28049606    28797301    17510324    24438588    25244985    26483478    23537049    24945155    27129103    25401762    26823975    21292972    27289101   

EMBL

BABH01038555    BABH01038556    GAIX01002093    JAA90467.1    ODYU01000178    SOQ34522.1    + More
KQ458756    KPJ05222.1    RSAL01000051    RVE50228.1    NWSH01000035    PCG80428.1    AGBW02010783    OWR47847.1    KQ460426    KPJ14793.1    KK852809    KDR15989.1    KK107078    QOIP01000011    EZA60371.1    RLU16731.1    GL888398    EGI61673.1    KQ981720    KYN37292.1    GL441701    EFN64395.1    KQ971348    EFA04857.1    GBBM01001634    JAC33784.1    JO844733    AEO36350.1    NNAY01004439    OXU17893.1    KQ982080    KYQ60177.1    GBYB01009505    JAG79272.1    APCN01000816    KQ976417    KYM89612.1    ADTU01013893    AAAB01008987    EAA01033.5    DS235796    EEB17161.1    LBMM01004398    KMQ92459.1    GFDF01008983    JAV05101.1    GACK01004621    JAA60413.1    GEZM01003542    JAV96743.1    AXCM01000964    GEDV01006337    JAP82220.1    GL764298    EFZ17895.1    BT126944    AEE61906.1    GL445560    EFN89414.1    GFAC01003132    JAT96056.1    GEFH01004277    JAP64304.1    GFPF01009749    MAA20895.1    GGFM01003419    MBW24170.1    GGFM01003545    MBW24296.1    CH477727    EAT36831.1    DS232266    EDS38778.1    ATLV01019122    KE525262    KFB43734.1    AJWK01022434    GANO01002852    JAB57019.1    ABJB010143812    ABJB010371167    DS827347    EEC12094.1    KQ977019    KYN06273.1    GADI01000500    JAA73308.1    GEFM01003871    JAP71925.1    GGFK01005673    MBW38994.1    GGFK01005672    MBW38993.1    GGFL01006385    MBW70563.1    GGFL01006384    MBW70562.1    JXUM01113208    JXUM01113209    JXUM01113210    KQ565668    KXJ70796.1    QCYY01001759    ROT75548.1    AXCN02001485    GGFJ01005826    MBW54967.1    GFDL01008199    JAV26846.1    GGFJ01005784    MBW54925.1    GFWV01020753    MAA45481.1    GGFJ01005783    MBW54924.1    NEVH01003505    PNF40491.1    GGLE01006028    MBY10154.1    KB632003    ERL87898.1    GAPW01001881    JAC11717.1    APGK01052956    KB741216    ENN72563.1    JH431806    GDRN01080575    JAI62193.1    UFQS01000556    UFQS01001853    UFQT01000556    UFQT01001853    SSX04900.1    SSX32015.1    GDKW01001550    JAI55045.1    KZ288254    PBC30879.1    JR050294    AEY61225.1    GECU01016036    JAS91670.1    GAPW01001921    JAC11677.1    GFXV01007522    MBW19327.1    GBHO01032282    GBHO01027044    GBRD01007303    GDHC01007204    JAG11322.1    JAG16560.1    JAG58518.1    JAQ11425.1    GFWV01020752    MAA45480.1    NCKU01003358    RWS07681.1    NCKU01003364    RWS07668.1    GL732681    EFX67304.1    GDIP01135360    JAL68354.1    GDIQ01254861    JAJ96863.1    GDIP01183791    GDIQ01084469    JAJ39611.1    JAN10268.1    GDIP01142299    JAL61415.1    LJIJ01000099    ODN02694.1    GDIQ01260420    JAJ91304.1    GDIP01242408    JAI80993.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000218220    UP000007151    UP000053240    + More
UP000027135    UP000192223    UP000053097    UP000279307    UP000007755    UP000078541    UP000000311    UP000007266    UP000215335    UP000075809    UP000075882    UP000075902    UP000076407    UP000075903    UP000075920    UP000075840    UP000078540    UP000005205    UP000007062    UP000009046    UP000036403    UP000075900    UP000075883    UP000069272    UP000008237    UP000075884    UP000075881    UP000008820    UP000002320    UP000030765    UP000092461    UP000075880    UP000001555    UP000078542    UP000076408    UP000069940    UP000249989    UP000079169    UP000283509    UP000075886    UP000075885    UP000235965    UP000030742    UP000019118    UP000075901    UP000242457    UP000285301    UP000000305    UP000094527   

PRIDE

H9JUA8   

Pfam

PF04379   DUF525        + More
PF08755   YccV-like

Interpro

IPR007474   ApaG_domain        + More
IPR036767   ApaG_sf       
IPR036623   Hemimethylated_DNA-bd_sf       
IPR011722   Hemimethylated_DNA-bd_dom       

SUPFAM

SSF141255   SSF141255        + More
SSF110069   SSF110069       

Gene 3D

2.60.40.1470    

ProteinModelPortal

H9JUA8   S4PZ62   A0A2H1V2E1   A0A194QI79   A0A3S2M3R2   A0A2A4K957   + More
A0A212F288   A0A0N1I879   A0A067QZK5   A0A1W4WNL8   A0A026WX96   F4WVU3   A0A195FAQ3   E2AQ61   D2A413   A0A023GIQ6   G3MS82   A0A232EHS2   A0A151XIK8   A0A182L8C6   A0A182UJQ8   A0A182XP06   A0A182V4V4   A0A0C9RMF3   A0A182VW68   A0A182HK48   A0A195BRF2   A0A158NF72   Q7PUT4   E0VUV5   A0A0J7KQD3   A0A182RFZ2   A0A1L8DF82   L7MB53   A0A1Y1NFN5   A0A182MH23   A0A131YUR1   E9INF6   J3JUM9   A0A182FS93   E2B4H8   A0A1E1XAI4   A0A131X9N0   A0A182NQY6   A0A224YVD7   A0A182JT91   A0A2M3Z6Q5   A0A2M3Z6Z4   Q16QZ1   B0X1Q0   A0A084W0J0   A0A1B0GJX4   U5EWR1   A0A182IPN2   B7PZS2   A0A151IMT8   A0A0K8RQW8   A0A131Y0C8   A0A2M4ADX8   A0A2M4ADY3   A0A2M4CZ10   A0A2M4CYZ9   A0A182YND4   A0A182H620   A0A3Q0IID8   A0A3R7PSE4   A0A182Q6T8   A0A2M4BPG3   A0A182PR87   A0A1Q3FH13   A0A2M4BPE9   A0A293MZX9   A0A2M4BPJ0   A0A2J7RI27   A0A2R5LKU7   U4U6G0   A0A023EQ73   N6T4M6   T1J2K2   A0A0P4W8S8   A0A182TA92   A0A336MQP7   A0A0P4VWH3   A0A2A3EI49   V9IJJ1   A0A1B6IXV3   A0A023EQ42   A0A2H8TYK1   A0A0A9WS77   A0A293N1M6   A0A443QXF0   A0A3S5WGU4   E9HLT2   A0A0P5U4B1   A0A0P5FI37   A0A0P6D149   A0A0P5TL24   A0A1D2NBR1   A0A0P5F430   A0A0P4XPL4  

PDB

1TZA     E-value=2.58893e-14,     Score=191

KEGG

101743596    K17809 polymerase delta-interacting protein 2 | (RefSeq) polymerase delta-interacting protein 2

GO

GO:0003677   GO:0008152   GO:0050660   GO:0003995   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0779499999999999

Exp number, first 60 AAs:

0.02205

Total prob of N-in:

0.00335

outside

1  -  375

 

 

Pi

46.816876

Theta

156.582001

Tajima's D

-1.814422

CLR

1827.068596

CSRT

0.0271986400679966

Interpretation

Possibly Positive selection