SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09817  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013140
Annotation
short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
Location in the cell
Mitochondrial   Reliability : 2.715
 

Sequence

CDS
ATGTTTATGCCTTTCTCTAAAACCATTCAAGCTTTAGGTCAATCAGTCACTAGACATACAAGATGCATCGCTTCTTTATCAGCATTATCTGAAGATTATCAGATGTTGCAAAAAACATGCCGTGATTTTGCGGAAGGCGAACTTAAGCCCAATGCTGCTAAATACGATCGAGATCATTTATATCCCGGAGAAGCAATTAAAAAATTAGGAGAACTAGGCTTAATGGCTATAGCGGTACCGGAAAAATGGGGAGGTGCAGGCTTAGACTATTTAGCATACGCTATAGCTCTCGAAGAGATATCCAGAGGTTGTGCTTCAGCTGGTGTTATAATGTCAGTGAATAACTCCTTATATCTTGGACCGCTGTCTCATTGGGGCACTGACAAACAAAAAGAACAGTTTGTAACTCCTTTTTGTACTGGTGATCCTGTGGGCTGCTTTGCTCTATCAGAACCCGGTAATGGATCAGATGCAGGAGCCGCCTCCACTACAGCAAAAGATGCGGGTGACAAGTGGATTCTGAATGGAACTAAATGTTGGATTACCAATGGATACGAGAGCAAAGCATCAGTAGTTTTTGCTACAACTGATAAGAGTTTAAAACATAAAGGTATTTCAGCATTTGTAGTTCCAAAACCTATAAAGGGTCTTGAATTAGGGAAAAAAGAAGATAAACTAGGTATAAGGGGGAGTTCAACTTGCTCCCTGATATATGAAGACTGTGAAATTCCCAAAGAGAACATCCTGGGTGAACCGGGGTTTGGATTCAAGATAGCTATGATGACTCTAGATGCGGGGAGAATTGGTATTGCTTCACAAGCTTTAGGTATAGCTCAGGCTTCACTGGATGTGGCAATAGAATATGCTTCGAAACGCATTGCTTTTGGCAAACCAATATTGAAATTGCAAGCTATTCAAAATAAATTAGCTGAAATGGCGCTCCGTCTTGAATCTGCACGCTTGCTTACATGGCGAGCGGCCTGGCTGAAGGACAACAAAAATCCCTATACTAAGGAGGCAGCAATGGCCAAGTTGGCTGCATCAGAGGCTGCTACGTTTTTATCACACCAATGTATCCAGATTCTTGGAGGAATGGGTTATGTATCAGATATGCCAGCAGAACGACATTACCGCGACGCTCGCATCACTGAGATTTACGAGGGCACCAGCGAAATACAAAGACTGGTTATAGCAGGACAACTGATCAAGGAATACGGACTGAATTAG
Protein
MFMPFSKTIQALGQSVTRHTRCIASLSALSEDYQMLQKTCRDFAEGELKPNAAKYDRDHLYPGEAIKKLGELGLMAIAVPEKWGGAGLDYLAYAIALEEISRGCASAGVIMSVNNSLYLGPLSHWGTDKQKEQFVTPFCTGDPVGCFALSEPGNGSDAGAASTTAKDAGDKWILNGTKCWITNGYESKASVVFATTDKSLKHKGISAFVVPKPIKGLELGKKEDKLGIRGSSTCSLIYEDCEIPKENILGEPGFGFKIAMMTLDAGRIGIASQALGIAQASLDVAIEYASKRIAFGKPILKLQAIQNKLAEMALRLESARLLTWRAAWLKDNKNPYTKEAAMAKLAASEAATFLSHQCIQILGGMGYVSDMPAERHYRDARITEIYEGTSEIQRLVIAGQLIKEYGLN

Summary

Cofactor
FAD
Similarity
Belongs to the acyl-CoA dehydrogenase family.
EMBL
BABH01038556    KJ622078    AID66668.1    NWSH01000035    PCG80426.1    ODYU01000178    + More
SOQ34523.1    RSAL01000051    RVE50229.1    KQ460426    KPJ14794.1    GAIX01005569    JAA86991.1    AGBW02010783    OWR47848.1    KQ458756    KPJ05223.1    GALX01005465    JAB63001.1    KQ971344    EFA05271.2    APCN01002058    AXCM01003378    APGK01055160    KB741261    ENN71561.1    AAAB01008987    EAA01272.5    CH477293    EAT44503.1    GGFK01011351    MBW44672.1    GECZ01020922    GECZ01006541    JAS48847.1    JAS63228.1    AXCN02000031    JRES01000091    KNC34207.1    ADMH02001488    ETN62356.1    JXUM01086406    JXUM01086407    KQ563565    KXJ73655.1    DS232151    EDS36141.1    UFQS01002855    UFQT01002855    SSX14769.1    SSX34161.1    GGFJ01006353    MBW55494.1    UFQS01001439    UFQT01001439    SSX10901.1    SSX30579.1    CH964251    EDW83359.1    GFDL01011015    JAV24030.1    AY190957    AAO01087.1    GBHO01034606    GBHO01025680    GBHO01025675    GBHO01025655    GBHO01025636    GBHO01005625    GDHC01019463    JAG08998.1    JAG17924.1    JAG17929.1    JAG17949.1    JAG17968.1    JAG37979.1    JAP99165.1    OUUW01000008    SPP83700.1    ATLV01015810    KE525036    KFB40792.1    GBRD01001832    GBRD01001831    JAG63990.1    CH940652    EDW59632.1    KA649723    AFP64352.1    AJVK01004271    CH480840    EDW49430.1    CM000070    EAL28883.2    CH479185    EDW38105.1    CP012526    ALC47337.1    AE014297    AY119269    AAF55709.1    AAM51129.1    CM000364    EDX12293.1    ABLF02025276    CH954181    EDV48449.1    GANO01002811    JAB57060.1    CVRI01000070    CRL07274.1    NEVH01006596    PNF37450.1    PNF37453.1    EZ423020    ADD19296.1    CM000160    EDW96072.1    KB631024    KB631053    ERL84019.1    ERL84047.1    GEDC01023714    GEDC01023145    GEDC01014059    GEDC01006095    JAS13584.1    JAS14153.1    JAS23239.1    JAS31203.1    AY190960    AAO01112.1    JXJN01025526    CH933806    EDW16073.1    JXUM01009662    KQ560288    KXJ83246.1    ACPB03006494    CH902617    EDV41735.1    CH916373    EDV94899.1    GFDF01001201    JAV12883.1    GFDF01001139    JAV12945.1    GDKW01001847    JAI54748.1    GEZM01039896    JAV81108.1    GL763802    EFZ19288.1    GDIQ01249301    JAK02424.1    GDIP01084396    JAM19319.1    GDIP01015571    JAM88144.1    LJIJ01000022    ODN05497.1    GDIP01082593    JAM21122.1    GDIQ01028522    JAN66215.1    LRGB01000944    KZS14477.1    AJWK01017657    QOIP01000004    RLU23709.1    KK107459    EZA50391.1    GL732551    EFX79557.1    GDRN01095577    JAI59488.1    KQ981673    KYN38365.1    GL888932    EGI57190.1    KQ980581    KYN15267.1    KQ976500    KYM83186.1   
Pfam
PF02770   Acyl-CoA_dh_M        + More
PF00441   Acyl-CoA_dh_1
PF02771   Acyl-CoA_dh_N
PF08028   Acyl-CoA_dh_2
PF00883   Peptidase_M17
PF02789   Peptidase_M17_N
Interpro
IPR006091   Acyl-CoA_Oxase/DH_cen-dom        + More
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR006089   Acyl-CoA_DH_CS       
IPR013786   AcylCoA_DH/ox_N       
IPR037069   AcylCoA_DH/ox_N_sf       
IPR036250   AcylCo_DH-like_C       
IPR013107   Acyl-CoA_DH_C_dom       
IPR000819   Peptidase_M17_C       
IPR008283   Peptidase_M17_N       
IPR011356   Leucine_aapep/pepB       
SUPFAM
SSF56645   SSF56645        + More
SSF47203   SSF47203       
Gene 3D
PDB
1JQI     E-value=8.47208e-150,     Score=1360

Ontologies

Topology

Length:
408
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04216
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00387
outside
1  -  408
 
 

Population Genetic Test Statistics

Pi
213.795328
Theta
177.542506
Tajima's D
0.577513
CLR
0.122552
CSRT
0.539023048847558
Interpretation
Uncertain
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