Gene

KWMTBOMO09808  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013116

Annotation

chaperonin_subunit_6a_zeta_[Bombyx_mori]

Location

Bomo_Chr16(+):9654759-9661583      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.96

CDS

ATGGCTGCCATTAGTTTATTAAATCCTAAAGCCGAGTTCGCTCGTGCTGCACAGGCACTTGCTGTAAATATATCCGCAGCTAAAGGAATTCAAGATGTAATGAAAACTAACCTTGGTCCGAAAGGCACGATGAAAATGTTGGTTTCTGGTGCTGGGGACATAAAGATCACCAAGGATGGCAATGTTTTGTTACATGAGATGCAAATCCAGCACCCTACAGCCTCACTGATTGCTCGAGCGTCAACCGCTCAAGATGATGCCACTGGAGATGGTACAACATCTACTGTCCTCCTCATTGGAGAGCTACTTAAACAGGCCGACATATTCATCAGTGAAGGCTTACATCCTAGGATCATTACTGAAGGCTTTGACATAGCTCGCAACAAGTCATTAGAAGTCTTGGAATCTATGAAGATTCCAATTGAGATTGCACGTGAGAATTTAGTTGATGTTGCCCGTACTTCACTCAAAACTAAGGTCCACCCAAGCTTGGCAGATGTGCTAACTGATGCTTGCGTTGATGCGGTACTCACCATTCGAACTCCAGGCAAACCTGTTGATCTGCACATGGTTGAAATTATGGAGATGAAACACAAGACGGCTACTGAAACTGTACTTGTAAAAGGTCTAGTAATGGATCATGGTGCACGTCACCCAGATATGCCAAAGCGTGTAGAAAATGCATACATTCTCACATGTAATGTGTCATTAGAGTATGAAAAGACAGAAGTAAATTCTGGCTTCTTCTACAAGTCTGCTGAGGATAGAGAAAAGCTTGTTGCTGCTGAAAGGGAATTTATTGATCAAAGAGTAAGAAAGATCGTTGCTCTCAAAAAGAAATTATGCGACGGTACTGACAAGACTTTCGTCGTTATCAACCAAAAAGGAATCGACCCCTTGTCACTGGATGCTTTTGCCAAAGAAGGTATTATTGGACTACGCAGAGCAAAACGGCGCAATATGGAACGTCTAGCCCTAGCGTGCGGGGGGTCCGCTGTTAACTCTGTCGATGATCTTACTGAAGACGCTTTAGGCTTTGCAGGCCTAGTCTACGAACACGTGCTCGGAGAAGACAAGTTTACCTTTGTTGAACAATGCAAGAATCCACAATCTGTCACCATCCTCATCAAGGGACCCAACAAGCATACGTTGACGCAAATCAAAGATGCAGTTCGTGACGGCCTCCGCGCTATTAATAACGCCATTGAAGATAAATGCGTCATACCCGGTGCTGCGGCCTTCGAAATCAAAGCTAACACGGAACTGCTGAAATATAAGGACACTGTTAAAGGCAAGGCCCGTCTTGGAATCCAAGCTTATGCCGAAGCTCTTTTGGTTATTCCTAAAACTCTGGCCGTTAACTCTGGTTACGATGCTCAAGATACTATAGTAAAGTTGCAGGAAGAGTCACGCCTTAATCCTGAGCCTATTGGCTTAGATTTGAGTACAGGTGAAGCATTCAAACCTACCGACTTAGGTATTTTGGACAACTATATCGTGAAGAAACAAATATTGAATTCCTGTTCAGTGATCGCAAGCAACCTCCTCCTTGTAGACGAGATTATGAGAGCAGGAATGAGCAGCCTCAAAGGATAA

Protein

MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARASTAQDDATGDGTTSTVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSAVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVDEIMRAGMSSLKG

Similarity

Belongs to the TCP-1 chaperonin family.

Uniprot

Q2F6C3   A0A212FJ61   A0A2H1V2E8   A0A2A4K857   A0A3S2M367   S4PDW0   + More
A0A0N1IEX5   A0A194QJZ8   A0A1L8EEA2   A0A1I8P4I6   A0A1L8EE95   W8C279   A0A0K8VQJ8   A0A034W9B6   T1PGT2   A0A0A1WXS6   A0A097P6I7   A0A0L0C137   A0A336LX66   A0A1W4XP63   A0A1Y1NDW3   D2A4I8   V5I9G4   A0A2J7PGY5   A0A067QHE4   A0A023ETN8   A0A023ETL9   Q174C6   N6TZB0   B3MXI0   A0A182P704   B4PX57   A0A0M4EJ31   W5J3C2   B3NTG6   A0A1W4V425   A0A2M3Z621   B5DLU0   A0A182VKE4   A0A182UJ87   A0A182KX61   A0A182XK15   Q7QDE6   A0A182HJX5   A0A0T6ASV4   A0A1B0C8A4   Q9VXQ5   U4USH2   V5RE81   A0A182QGR3   A0A182KDT6   A0A1A9XRB2   A0A182NKZ9   A0A1J1HTZ5   A0A1B0A037   A0A182VS76   U5EX39   A0A3B0KVS6   D3TMK9   A0A182YRK1   O96965   A0A182LWS2   B4NCT3   A0A084VTX8   A0A182R861   B4L2D4   B4JND6   A0A1Q3F2D5   A0A232EXZ9   B0W8W8   E2BN30   K7J5R2   A0A182F8I3   A0A2M4BJT7   A0A1J1HYD0   A0A2M4A6V7   A0A182IY84   A0A1B6I309   A0A1L8DUC7   B4GLB1   A0A1L8DUA0   B5DWX8   A0A1B6CFE0   E9J585   A0A3B0JU54   A0A0N0U3R7   A0A2A3EB60   V9IIN2   V4A0Q9   A0A310SE15   H9AWU2   A0A0J7L1D5   K1PXN5   A0A0L7R319   A0A151WMB8   E9FYC3   A0A151ICX0   A0A195E5K5   F4WPE3   A0A158NQZ3  

Pubmed

19121390    22118469    23622113    26354079    24495485    25348373    + More
25830018    25315136    26108605    28004739    18362917    19820115    24845553    24945155    26483478    17510324    23537049    17994087    17550304    20920257    23761445    15632085    20966253    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20353571    25244985    18057021    24438588    28648823    20798317    20075255    21282665    23254933    22992520    21292972    21719571    21347285   

EMBL

BABH01038575    DQ311149    ABD36094.1    AGBW02008320    OWR53749.1    ODYU01000178    + More
SOQ34532.1    NWSH01000035    PCG80417.1    RSAL01000051    RVE50238.1    GAIX01003476    JAA89084.1    KQ460426    KPJ14804.1    KQ458756    KPJ05235.1    GFDG01001762    JAV17037.1    GFDG01001779    JAV17020.1    GAMC01003247    JAC03309.1    GDHF01011155    JAI41159.1    GAKP01007658    JAC51294.1    KA647093    AFP61722.1    GBXI01011074    JAD03218.1    KM215143    AIU39616.1    JRES01001143    KNC25174.1    UFQT01000271    SSX22642.1    GEZM01008450    JAV94775.1    KQ971344    EFA05810.1    GALX01002980    JAB65486.1    NEVH01025161    PNF15588.1    KK853387    KDR07944.1    GAPW01000900    JAC12698.1    JXUM01245109    GAPW01000908    KQ636705    JAC12690.1    KXJ62410.1    CH477414    EAT41398.1    APGK01055164    KB741261    ENN71572.1    CH902630    EDV38445.1    CM000162    EDX01820.1    CP012528    ALC49054.1    ADMH02002206    ETN57823.1    CH954180    EDV46970.1    GGFM01003194    MBW23945.1    CH379064    EDY72486.1    AAAB01008851    EAA07393.4    APCN01002215    LJIG01022882    KRT78240.1    AJWK01000296    AE014298    AY051470    AAF48503.1    AAK92894.1    KB632344    ERL93050.1    KF621135    AHB33471.1    AXCN02000100    CVRI01000021    CRK91543.1    GANO01001137    JAB58734.1    OUUW01000042    SPP89976.1    CCAG010015881    EZ422661    ADD18937.1    Y18419    CH940664    CAA77160.1    EDW63022.1    AXCM01003454    CH964239    EDW82642.1    ATLV01016551    KE525093    KFB41422.1    CH933810    EDW07795.1    CH916371    EDV92229.1    GFDL01013320    JAV21725.1    NNAY01001696    OXU23195.1    DS231860    EDS39347.1    GL449382    EFN82934.1    GGFJ01004198    MBW53339.1    CRK91542.1    GGFK01003037    MBW36358.1    GECU01026402    JAS81304.1    GFDF01004064    JAV10020.1    CH479185    EDW38335.1    GFDF01004065    JAV10019.1    CM000070    EDY68580.1    GEDC01025111    JAS12187.1    GL768124    EFZ12013.1    OUUW01000008    SPP83932.1    KQ435885    KOX69602.1    KZ288295    PBC28967.1    JR047758    AEY60497.1    KB201305    ESO97378.1    KQ760801    OAD58980.1    JN899240    AFC98245.1    LBMM01001295    KMQ96562.1    JH815665    EKC21190.1    KQ414663    KOC65272.1    KQ982944    KYQ48983.1    GL732527    EFX87506.1    KQ978052    KYM97788.1    KQ979608    KYN20443.1    GL888243    EGI64038.1    ADTU01023710   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000053240    UP000053268    + More
UP000095300    UP000095301    UP000037069    UP000192223    UP000007266    UP000235965    UP000027135    UP000069940    UP000249989    UP000008820    UP000019118    UP000007801    UP000075885    UP000002282    UP000092553    UP000000673    UP000008711    UP000192221    UP000001819    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000092461    UP000000803    UP000030742    UP000075886    UP000075881    UP000092443    UP000075884    UP000183832    UP000092445    UP000075920    UP000268350    UP000092444    UP000076408    UP000008792    UP000075883    UP000007798    UP000030765    UP000075900    UP000009192    UP000001070    UP000215335    UP000002320    UP000008237    UP000002358    UP000069272    UP000075880    UP000008744    UP000053105    UP000242457    UP000030746    UP000036403    UP000005408    UP000053825    UP000075809    UP000000305    UP000078542    UP000078492    UP000007755    UP000005205   

PRIDE

Q2F6C3   

Pfam

PF00118   Cpn60_TCP1

Interpro

IPR002194   Chaperonin_TCP-1_CS        + More
IPR027409   GroEL-like_apical_dom_sf       
IPR027413   GROEL-like_equatorial_sf       
IPR012722   Chap_CCT_zeta       
IPR027410   TCP-1-like_intermed_sf       
IPR002423   Cpn60/TCP-1       
IPR017998   Chaperone_TCP-1       

SUPFAM

SSF48592   SSF48592        + More
SSF54849   SSF54849       
SSF52029   SSF52029       

Gene 3D

1.10.560.10     3.30.260.10     3.50.7.10    

CDD

cd03342  TCP1_zeta

ProteinModelPortal

Q2F6C3   A0A212FJ61   A0A2H1V2E8   A0A2A4K857   A0A3S2M367   S4PDW0   + More
A0A0N1IEX5   A0A194QJZ8   A0A1L8EEA2   A0A1I8P4I6   A0A1L8EE95   W8C279   A0A0K8VQJ8   A0A034W9B6   T1PGT2   A0A0A1WXS6   A0A097P6I7   A0A0L0C137   A0A336LX66   A0A1W4XP63   A0A1Y1NDW3   D2A4I8   V5I9G4   A0A2J7PGY5   A0A067QHE4   A0A023ETN8   A0A023ETL9   Q174C6   N6TZB0   B3MXI0   A0A182P704   B4PX57   A0A0M4EJ31   W5J3C2   B3NTG6   A0A1W4V425   A0A2M3Z621   B5DLU0   A0A182VKE4   A0A182UJ87   A0A182KX61   A0A182XK15   Q7QDE6   A0A182HJX5   A0A0T6ASV4   A0A1B0C8A4   Q9VXQ5   U4USH2   V5RE81   A0A182QGR3   A0A182KDT6   A0A1A9XRB2   A0A182NKZ9   A0A1J1HTZ5   A0A1B0A037   A0A182VS76   U5EX39   A0A3B0KVS6   D3TMK9   A0A182YRK1   O96965   A0A182LWS2   B4NCT3   A0A084VTX8   A0A182R861   B4L2D4   B4JND6   A0A1Q3F2D5   A0A232EXZ9   B0W8W8   E2BN30   K7J5R2   A0A182F8I3   A0A2M4BJT7   A0A1J1HYD0   A0A2M4A6V7   A0A182IY84   A0A1B6I309   A0A1L8DUC7   B4GLB1   A0A1L8DUA0   B5DWX8   A0A1B6CFE0   E9J585   A0A3B0JU54   A0A0N0U3R7   A0A2A3EB60   V9IIN2   V4A0Q9   A0A310SE15   H9AWU2   A0A0J7L1D5   K1PXN5   A0A0L7R319   A0A151WMB8   E9FYC3   A0A151ICX0   A0A195E5K5   F4WPE3   A0A158NQZ3  

PDB

4B2T     E-value=0,     Score=1899

KEGG

692796    K09498 T-complex protein 1 subunit zeta | (RefSeq) chaperonin subunit 6a zeta

GO

GO:0006457   GO:0051082   GO:0005737   GO:0005524   GO:0005832   GO:0007099   GO:0000278   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  

Subcellular location

Cytoplasm  

Length:

531

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01865

Exp number, first 60 AAs:

0.0027

Total prob of N-in:

0.00085

outside

1  -  531

 

 

Pi

25.736773

Theta

204.082191

Tajima's D

0.502821

CLR

0.007264

CSRT

0.521173941302935

Interpretation

Uncertain