Gene

KWMTBOMO09797

Pre Gene Modal

BGIBMGA013150

Annotation

PREDICTED:_cell_cycle_checkpoint_control_protein_RAD9A_[Amyelois_transitella]

Location

Bomo_Chr16(-):9500230-9501684      View in EpiBrowser

Full name

Cell cycle checkpoint control protein      

Location in the cell

Nuclear   Reliability : 3.026

CDS

ATGAAGTGTCACGTTCCGGGGCCTAATGTTAAAGTTTTAGCAAGAACAGTACATACCTTAGCTCGATTTGGAGATGAATTATACCTGGAGTCATTACCCGACTGTATATTATTGAGAACATTGAATGCAGCCGAATCCGCATATGCGATGATTAAATTTAACAAAAACTTCTTTTCTTATTTTAATTACAATTATTACTCGACTGAAGATAACGAAGGTCTGAAATGCAAAATATCGATGAAGTCTGCTTTAAACGCCTTTAAATCTCCAGCTCACATTGATAAACAGGTAGAAAGTTTGGAAATGAAATTAGATCCAGAATCTTGCAAGTTAATATTTTGTTTGAAATGCAAGCATGGTATAGTTAAGACACATTTTGTATCAATATTAGACTGTAAAGCGATGCAGGCTGTGTACACTAAAGATACAGTACCAAACAGAATTACTTCACCTCAAAGAATACTAAACGAAACACTGAACAGCTTCCAAACCTCTGACGACCAAGTGACATTAGAGGCCACAACTAAGTCACTGGTAATAAAAAATTATATTGATAGTAATATGGATCTGACAAAAATAATTCGAACACATGTAAGCTTAGATCCTGCTGAATTTGACAACTACATCATAGGAGAGGAAACCACTATAACATTTACATTAAAAGAGTTCAGAGCCCTACTTGCGTTTGCTGAAGCATTAAATTTGCCGTTGCAACTTCATTTTGAGACTACAGGTCGTCCAGCTGTATTCATAGTCCATAATGGAACTACTTTTGAAGCACATTTTGTGTTAGCAACATCTAAACCAGACAATGCAACACAAGCAACATCAACACAGAGCACTACCACAAAGGAAAGGAATAAAAGAAAAGATACATGTAATACTCAAGGCTCAGTAAAAAAGAAACGGCATATAGATGTTGAATTTTCTAAGTGCTTAGAAGAGGACTCTCATCTATTTAATTTTGTTGATATCCCTGATGATATAAATCTTAAAGCTAGTAATAATTTAGATAATGTTAAAGAACAAATAGACTTTGATAATGTTATTCCAGCATCTCCAACTTCAAGGACTAAGATAAAATCAGTATTTAAGAGATGTTTTGAAAGTACTTTTGATCCAAAAAGTATTCAAGGTGTCATTTTAGCTGAGAATTCAGACAGTGAATAA

Protein

MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIKFNKNFFSYFNYNYYSTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYIDSNMDLTKIIRTHVSLDPAEFDNYIIGEETTITFTLKEFRALLAFAEALNLPLQLHFETTGRPAVFIVHNGTTFEAHFVLATSKPDNATQATSTQSTTTKERNKRKDTCNTQGSVKKKRHIDVEFSKCLEEDSHLFNFVDIPDDINLKASNNLDNVKEQIDFDNVIPASPTSRTKIKSVFKRCFESTFDPKSIQGVILAENSDSE

Similarity

Belongs to the rad9 family.

Uniprot

H9JUD7   A0A1E1W7Y1   A0A2H1VEA8   A0A2A4IUE8   A0A3S2PFX5   A0A0L7L9F0   + More
A0A194RDR1   A0A212FMU0   A0A194QIA8   A0A2Z5TRD3   A0A067RBB5   A0A2J7PF94   A0A2P8XFH4   A0A088A4B4   E9IDD7   V3ZTQ8   A0A2A3E7K5   A0A1B6IQ03   A0A1B6JJJ5   A0A1S3JTY2   A0A310SK19   A0A0N0U4G0   A0A1B6CP83   T2M799   A0A195CPT5   A0A423TJ99   A0A0B6ZL02   A0A1W2WLE6   F6TZC4   K7ITM9   A0A232EMQ1   G1TKX6   I3NF38   A0A2Y9DYX5   A0A1Y1KPQ3   F1RUX7   A0A212DHH1   G3T2S3  

Pubmed

19121390    26227816    26354079    22118469    26760975    24845553    + More
29403074    21282665    23254933    24065732    12481130    15114417    20075255    28648823    21993624    28004739    29294181   

EMBL

BABH01038605    GDQN01007954    JAT83100.1    ODYU01002091    SOQ39159.1    NWSH01007771    + More
PCG62812.1    RSAL01000051    RVE50250.1    JTDY01002148    KOB71999.1    KQ460323    KPJ15978.1    AGBW02007651    OWR55019.1    KQ458756    KPJ05252.1    FX985772    BBA93659.1    KK852571    KDR21121.1    NEVH01026085    PNF15001.1    PYGN01002324    PSN30763.1    GL762454    EFZ21461.1    KB201750    ESO94828.1    KZ288344    PBC27688.1    GECU01018707    JAS88999.1    GECU01028693    GECU01008342    GECU01000865    JAS79013.1    JAS99364.1    JAT06842.1    KQ766043    OAD53772.1    KQ435840    KOX71424.1    GEDC01022038    JAS15260.1    HAAD01001573    CDG67805.1    KQ977444    KYN02721.1    QCYY01001648    ROT76528.1    HACG01022212    CEK69077.1    EAAA01001410    NNAY01003319    OXU19626.1    AAGW02071570    AGTP01072311    GEZM01077557    JAV63274.1    AEMK02000006    MKHE01000002    OWK17622.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000053240    UP000007151    + More
UP000053268    UP000027135    UP000235965    UP000245037    UP000005203    UP000030746    UP000242457    UP000085678    UP000053105    UP000078542    UP000283509    UP000008144    UP000002358    UP000215335    UP000001811    UP000005215    UP000248480    UP000008227    UP000007646   

PRIDE

H9JUD7    F1RUX7   

Pfam

PF04139   Rad9

Interpro

IPR007268   Rad9/Ddc1        + More
IPR026584   Rad9       

ProteinModelPortal

H9JUD7   A0A1E1W7Y1   A0A2H1VEA8   A0A2A4IUE8   A0A3S2PFX5   A0A0L7L9F0   + More
A0A194RDR1   A0A212FMU0   A0A194QIA8   A0A2Z5TRD3   A0A067RBB5   A0A2J7PF94   A0A2P8XFH4   A0A088A4B4   E9IDD7   V3ZTQ8   A0A2A3E7K5   A0A1B6IQ03   A0A1B6JJJ5   A0A1S3JTY2   A0A310SK19   A0A0N0U4G0   A0A1B6CP83   T2M799   A0A195CPT5   A0A423TJ99   A0A0B6ZL02   A0A1W2WLE6   F6TZC4   K7ITM9   A0A232EMQ1   G1TKX6   I3NF38   A0A2Y9DYX5   A0A1Y1KPQ3   F1RUX7   A0A212DHH1   G3T2S3  

PDB

3A1J     E-value=3.59052e-42,     Score=432

KEGG

101745714    K10994 cell cycle checkpoint control protein RAD9A [EC:3.1.11.2] | (RefSeq) cell cycle checkpoint co

GO

GO:0030896   GO:0000077   GO:0006281   GO:0031573   GO:0071479   GO:0008408   GO:0019901   GO:0005737   GO:0005654   GO:0017124   GO:0042826   GO:1902231   GO:0006351   GO:0030131   GO:0005488   GO:0008565   GO:0015031   GO:0009258   GO:0016155   GO:0003824  

PANTHER

PTHR15237  

Length:

389

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00554000000000001

Exp number, first 60 AAs:

0.00167

Total prob of N-in:

0.00665

outside

1  -  389

 

 

Pi

49.455675

Theta

144.817094

Tajima's D

-2.069828

CLR

397.129157

CSRT

0.0101994900254987

Interpretation

Possibly Positive selection